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1.5.0-DEV-1f787492c3.log
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Julia Version 1.5.0-DEV.507
Commit 1f787492c3 (2020-03-25 15:03 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Parsers ─────────────── v0.3.12
Installed OrderedCollections ──── v1.1.0
Installed Blosc ───────────────── v0.6.0
Installed MutableArithmetics ──── v0.2.7
Installed CPLEX ───────────────── v0.6.3
Installed MathProgBase ────────── v0.7.8
Installed HTTP ────────────────── v0.8.13
Installed COBRA ───────────────── v0.3.2
Installed Bzip2_jll ───────────── v1.0.6+1
Installed CMake ───────────────── v1.2.0
Installed Parameters ──────────── v0.12.0
Installed URIParser ───────────── v0.4.0
Installed MbedTLS_jll ─────────── v2.16.0+1
Installed GLPK ────────────────── v0.12.1
Installed CodecBzip2 ──────────── v0.7.1
Installed MAT ─────────────────── v0.7.0
Installed CMakeWrapper ────────── v0.2.3
Installed GLPKMathProgInterface ─ v0.4.4
Installed BinaryProvider ──────── v0.5.8
Installed CodecZlib ───────────── v0.6.0
Installed Compat ──────────────── v2.2.0
Installed JSONSchema ──────────── v0.2.0
Installed BenchmarkTools ──────── v0.5.0
Installed IniFile ─────────────── v0.5.0
Installed TranscodingStreams ──── v0.9.5
Installed MbedTLS ─────────────── v1.0.1
Installed BinDeps ─────────────── v1.0.0
Installed MathOptInterface ────── v0.9.13
Installed BufferedStreams ─────── v1.0.0
Installed HDF5 ────────────────── v0.12.5
Installed JSON ────────────────── v0.21.0
Updating `~/.julia/environments/v1.5/Project.toml`
58298e0b + COBRA v0.3.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
6e4b80f9 + BenchmarkTools v0.5.0
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.6.0
e1450e63 + BufferedStreams v1.0.0
6e34b625 + Bzip2_jll v1.0.6+1
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
58298e0b + COBRA v0.3.2
a076750e + CPLEX v0.6.3
523fee87 + CodecBzip2 v0.7.1
944b1d66 + CodecZlib v0.6.0
34da2185 + Compat v2.2.0
60bf3e95 + GLPK v0.12.1
3c7084bd + GLPKMathProgInterface v0.4.4
f67ccb44 + HDF5 v0.12.5
cd3eb016 + HTTP v0.8.13
83e8ac13 + IniFile v0.5.0
682c06a0 + JSON v0.21.0
7d188eb4 + JSONSchema v0.2.0
23992714 + MAT v0.7.0
b8f27783 + MathOptInterface v0.9.13
fdba3010 + MathProgBase v0.7.8
739be429 + MbedTLS v1.0.1
c8ffd9c3 + MbedTLS_jll v2.16.0+1
d8a4904e + MutableArithmetics v0.2.7
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
3bb67fe8 + TranscodingStreams v0.9.5
30578b45 + URIParser v0.4.0
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CMake ────→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc ────→ `~/.julia/packages/Blosc/ZgcAM/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building CPLEX ────→ `~/.julia/packages/CPLEX/VVr3o/deps/build.log`
┌ Error: Error building `CPLEX`:
│ ERROR: LoadError: Unable to locate CPLEX installation. Note this must be downloaded separately. See the CPLEX.jl README for further instructions.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] try_local_installation() at /home/pkgeval/.julia/packages/CPLEX/VVr3o/deps/build.jl:64
│ [3] top-level scope at /home/pkgeval/.julia/packages/CPLEX/VVr3o/deps/build.jl:80
│ [4] include(::String) at ./client.jl:441
│ [5] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/CPLEX/VVr3o/deps/build.jl:77
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:912
Building GLPK ─────→ `~/.julia/packages/GLPK/HjJiX/deps/build.log`
Building HDF5 ─────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Testing COBRA
Status `/tmp/jl_gRgpKk/Project.toml`
58298e0b COBRA v0.3.2
a076750e CPLEX v0.6.3
60bf3e95 GLPK v0.12.1
3c7084bd GLPKMathProgInterface v0.4.4
cd3eb016 HTTP v0.8.13
23992714 MAT v0.7.0
fdba3010 MathProgBase v0.7.8
8ba89e20 Distributed
37e2e46d LinearAlgebra
44cfe95a Pkg
2f01184e SparseArrays
8dfed614 Test
Status `/tmp/jl_gRgpKk/Manifest.toml`
6e4b80f9 BenchmarkTools v0.5.0
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.6.0
e1450e63 BufferedStreams v1.0.0
6e34b625 Bzip2_jll v1.0.6+1
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
58298e0b COBRA v0.3.2
a076750e CPLEX v0.6.3
523fee87 CodecBzip2 v0.7.1
944b1d66 CodecZlib v0.6.0
34da2185 Compat v2.2.0
60bf3e95 GLPK v0.12.1
3c7084bd GLPKMathProgInterface v0.4.4
f67ccb44 HDF5 v0.12.5
cd3eb016 HTTP v0.8.13
83e8ac13 IniFile v0.5.0
682c06a0 JSON v0.21.0
7d188eb4 JSONSchema v0.2.0
23992714 MAT v0.7.0
b8f27783 MathOptInterface v0.9.13
fdba3010 MathProgBase v0.7.8
739be429 MbedTLS v1.0.1
c8ffd9c3 MbedTLS_jll v2.16.0+1
d8a4904e MutableArithmetics v0.2.7
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
3bb67fe8 TranscodingStreams v0.9.5
30578b45 URIParser v0.4.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:530
ERROR: LoadError: CPLEX not properly installed. Please run Pkg.build("CPLEX")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /home/pkgeval/.julia/packages/CPLEX/VVr3o/src/CPLEX.jl:13
[3] include(::Function, ::Module, ::String) at ./Base.jl:380
[4] include(::Module, ::String) at ./Base.jl:368
[5] top-level scope at none:2
[6] eval at ./boot.jl:331 [inlined]
[7] eval(::Expr) at ./client.jl:451
[8] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/CPLEX/VVr3o/src/CPLEX.jl:10
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:530
>> Checking the system's configuration ...
GLPKMathProgInterface is installed.
Package Gurobi is not installed. In order to use Gurobi, you must first run `Pkg.add("Gurobi")`
ERROR: LoadError: CPLEX not properly installed. Please run Pkg.build("CPLEX")
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] top-level scope at /home/pkgeval/.julia/packages/CPLEX/VVr3o/src/CPLEX.jl:13
[3] include(::Function, ::Module, ::String) at ./Base.jl:380
[4] include(::Module, ::String) at ./Base.jl:368
[5] top-level scope at none:2
[6] eval at ./boot.jl:331 [inlined]
[7] eval(::Expr) at ./client.jl:451
[8] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/CPLEX/VVr3o/src/CPLEX.jl:10
Package CPLEX is not installed. In order to use CPLEX, you must first run `Pkg.add("CPLEX")`
>> Done. 1 solvers are installed and ready to use.
[ Info: Parallel version - Connecting the 4 workers ...
4 local workers are connected. (+1) on host: 117f1ff0a3d3
Downloading the ecoli_core model ...ERROR: LoadError: HTTP.ExceptionRequest.StatusError(404, "GET", "/LCSB-BioCore/COBRA.models/raw/master/mat/ecoli_core_model.mat", HTTP.Messages.Response:
"""
HTTP/1.1 404 Not Found
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Stacktrace:
[1] request(::Type{ExceptionLayer{ConnectionPoolLayer{StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any,N} where N; kw::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/ExceptionRequest.jl:22
[2] (::Base.var"#58#60"{Base.var"#58#59#61"{ExponentialBackOff,HTTP.RetryRequest.var"#2#3"{Bool,HTTP.Messages.Request},typeof(HTTP.request)}})(::Type{T} where T, ::Vararg{Any,N} where N; kwargs::Base.Iterators.Pairs{Symbol,Nothing,Tuple{Symbol},NamedTuple{(:iofunction,),Tuple{Nothing}}}) at ./error.jl:288
[3] #request#1 at /home/pkgeval/.julia/packages/HTTP/facW7/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{MessageLayer{RetryLayer{ExceptionLayer{ConnectionPoolLayer{StreamLayer{Union{}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/MessageRequest.jl:51
[5] request at /home/pkgeval/.julia/packages/HTTP/facW7/src/MessageRequest.jl:28 [inlined]
[6] request(::Type{BasicAuthLayer{MessageLayer{RetryLayer{ExceptionLayer{ConnectionPoolLayer{StreamLayer{Union{}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/BasicAuthRequest.jl:28
[7] request at /home/pkgeval/.julia/packages/HTTP/facW7/src/BasicAuthRequest.jl:21 [inlined]
[8] request(::Type{RedirectLayer{BasicAuthLayer{MessageLayer{RetryLayer{ExceptionLayer{ConnectionPoolLayer{StreamLayer{Union{}}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/RedirectRequest.jl:24
[9] request(::Type{RedirectLayer{BasicAuthLayer{MessageLayer{RetryLayer{ExceptionLayer{ConnectionPoolLayer{StreamLayer{Union{}}}}}}}}}, ::String, ::HTTP.URIs.URI, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/RedirectRequest.jl:21
[10] request(::String, ::String, ::Array{Pair{SubString{String},SubString{String}},1}, ::Array{UInt8,1}; headers::Array{Pair{SubString{String},SubString{String}},1}, body::Array{UInt8,1}, query::Nothing, kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/HTTP/facW7/src/HTTP.jl:314
[11] request at /home/pkgeval/.julia/packages/HTTP/facW7/src/HTTP.jl:314 [inlined] (repeats 2 times)
[12] #get#12 at /home/pkgeval/.julia/packages/HTTP/facW7/src/HTTP.jl:389 [inlined]
[13] get at /home/pkgeval/.julia/packages/HTTP/facW7/src/HTTP.jl:389 [inlined]
[14] getTestModel() at /home/pkgeval/.julia/packages/COBRA/o1SnO/test/getTestModel.jl:5
[15] top-level scope at /home/pkgeval/.julia/packages/COBRA/o1SnO/test/runtests.jl:35
[16] include(::String) at ./client.jl:441
[17] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/COBRA/o1SnO/test/runtests.jl:35
ERROR: Package COBRA errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16