1.5.0-DEV-3720edfc06.log

Julia Version 1.5.0-DEV.230
Commit 3720edfc06 (2020-02-03 20:02 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
  Installed Missings ──────────────────── v0.4.3
  Installed Requires ──────────────────── v1.0.1
  Installed DataValueInterfaces ───────── v1.0.0
  Installed Bedgraph ──────────────────── v1.2.1
  Installed BedgraphFiles ─────────────── v2.1.3
  Installed IteratorInterfaceExtensions ─ v1.0.0
  Installed TableTraitsUtils ──────────── v1.0.1
  Installed JSON ──────────────────────── v0.21.0
  Installed TableTraits ───────────────── v1.0.0
  Installed TableShowUtils ────────────── v0.2.5
  Installed Parsers ───────────────────── v0.3.11
  Installed DataAPI ───────────────────── v1.1.0
  Installed DataValues ────────────────── v0.4.13
  Installed IterableTables ────────────── v1.0.0
  Installed FileIO ────────────────────── v1.2.1
   Updating `~/.julia/environments/v1.5/Project.toml`
  [85eb9095] + BedgraphFiles v2.1.3
   Updating `~/.julia/environments/v1.5/Manifest.toml`
  [0bcc2ff6] + Bedgraph v1.2.1
  [85eb9095] + BedgraphFiles v2.1.3
  [9a962f9c] + DataAPI v1.1.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.13
  [5789e2e9] + FileIO v1.2.1
  [1c8ee90f] + IterableTables v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e1d29d7a] + Missings v0.4.3
  [69de0a69] + Parsers v0.3.11
  [ae029012] + Requires v1.0.1
  [5e66a065] + TableShowUtils v0.2.5
  [3783bdb8] + TableTraits v1.0.0
  [382cd787] + TableTraitsUtils v1.0.1
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8ba89e20] + Distributed 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [6462fe0b] + Sockets 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
    Testing BedgraphFiles
Status `/tmp/jl_hCjauD/Manifest.toml`
  [0bcc2ff6] Bedgraph v1.2.1
  [85eb9095] BedgraphFiles v2.1.3
  [324d7699] CategoricalArrays v0.7.7
  [34da2185] Compat v3.2.0
  [9a962f9c] DataAPI v1.1.0
  [a93c6f00] DataFrames v0.20.0
  [864edb3b] DataStructures v0.17.9
  [e2d170a0] DataValueInterfaces v1.0.0
  [e7dc6d0d] DataValues v0.4.13
  [5789e2e9] FileIO v1.2.1
  [41ab1584] InvertedIndices v1.0.0
  [1c8ee90f] IterableTables v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [1914dd2f] MacroTools v0.5.4
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.1.0
  [69de0a69] Parsers v0.3.11
  [2dfb63ee] PooledArrays v0.5.3
  [1a8c2f83] Query v0.12.2
  [2aef5ad7] QueryOperators v0.9.1
  [189a3867] Reexport v0.2.0
  [ae029012] Requires v1.0.1
  [a2af1166] SortingAlgorithms v0.3.1
  [5e66a065] TableShowUtils v0.2.5
  [3783bdb8] TableTraits v1.0.0
  [382cd787] TableTraitsUtils v1.0.1
  [bd369af6] Tables v0.2.11
  [2a0f44e3] Base64 
  [ade2ca70] Dates 
  [8bb1440f] DelimitedFiles 
  [8ba89e20] Distributed 
  [9fa8497b] Future 
  [b77e0a4c] InteractiveUtils 
  [76f85450] LibGit2 
  [8f399da3] Libdl 
  [37e2e46d] LinearAlgebra 
  [56ddb016] Logging 
  [d6f4376e] Markdown 
  [a63ad114] Mmap 
  [44cfe95a] Pkg 
  [de0858da] Printf 
  [3fa0cd96] REPL 
  [9a3f8284] Random 
  [ea8e919c] SHA 
  [9e88b42a] Serialization 
  [1a1011a3] SharedArrays 
  [6462fe0b] Sockets 
  [2f01184e] SparseArrays 
  [10745b16] Statistics 
  [8dfed614] Test 
  [cf7118a7] UUIDs 
  [4ec0a83e] Unicode 
┌ Warning: `convert(::Type{Vector{Record}}, chroms::AbstractVector{<:AbstractString}, firsts::AbstractVector{Int}, lasts::AbstractVector{Int}, values::AbstractVector{<:Real})` is deprecated, use `Record.(chroms, firsts, lasts, values)` instead.
│   caller = top-level scope at runtests.jl:25
└ @ Core ~/.julia/packages/BedgraphFiles/UcViC/test/runtests.jl:25
┌ Warning: `convert(::Type{Vector{Record}}, chroms::AbstractVector{<:AbstractString}, firsts::AbstractVector{Int}, lasts::AbstractVector{Int}, values::AbstractVector{<:Real})` is deprecated, use `Record.(chroms, firsts, lasts, values)` instead.
│   caller = _Records(::QueryOperators.EnumerableFilter{NamedTuple{(:chrom, :first, :last, :value),Tuple{String,Int64,Int64,Float64}},QueryOperators.EnumerableIterable{NamedTuple{(:chrom, :first, :last, :value),Tuple{String,Int64,Int64,Float64}},TableTraitsUtils.TableIterator{NamedTuple{(:chrom, :first, :last, :value),Tuple{String,Int64,Int64,Float64}},Tuple{Array{String,1},Array{Int64,1},Array{Int64,1},Array{Float64,1}}}},var"#4#6"}) at BedgraphFiles.jl:80
└ @ BedgraphFiles ~/.julia/packages/BedgraphFiles/UcViC/src/BedgraphFiles.jl:80
┌ Warning: `convert(::Type{Vector{Record}}, chroms::AbstractVector{<:AbstractString}, firsts::AbstractVector{Int}, lasts::AbstractVector{Int}, values::AbstractVector{<:Real})` is deprecated, use `Record.(chroms, firsts, lasts, values)` instead.
│   caller = _Records(::Tables.DataValueRowIterator{NamedTuple{(:chrom, :first, :last, :value),Tuple{String,Int64,Int64,Float64}},Tables.RowIterator{NamedTuple{(:chrom, :first, :last, :value),Tuple{Array{String,1},Array{Int64,1},Array{Int64,1},Array{Float64,1}}}}}) at BedgraphFiles.jl:80
└ @ BedgraphFiles ~/.julia/packages/BedgraphFiles/UcViC/src/BedgraphFiles.jl:80

9x4 bedGraph file
chrom │ first    │ last     │ value
──────┼──────────┼──────────┼──────
chr19 │ 49302000 │ 49302300 │ -1.0 
chr19 │ 49302300 │ 49302600 │ -0.75
chr19 │ 49302600 │ 49302900 │ -0.5 
chr19 │ 49302900 │ 49303200 │ -0.25
chr19 │ 49303200 │ 49303500 │ 0.0  
chr19 │ 49303500 │ 49303800 │ 0.25 
chr19 │ 49303800 │ 49304100 │ 0.5  
chr19 │ 49304100 │ 49304400 │ 0.75 
chr19 │ 49304400 │ 49304700 │ 1.0  
Test Summary: | Pass  Total
BedgraphFiles |   41     41
    Testing BedgraphFiles tests passed