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1.6.0-DEV-a6de8b6186.log
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Julia Version 1.6.0-DEV.587
Commit a6de8b6186 (2020-08-05 14:09 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed XML2_jll ───────────────────── v2.9.10+1
Installed CpuId ──────────────────────── v0.2.2
Installed TableTraits ────────────────── v1.0.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Twiddle ────────────────────── v1.1.2
Installed DataStructures ─────────────── v0.17.20
Installed LoopVectorization ──────────── v0.8.22
Installed Reexport ───────────────────── v0.2.0
Installed RecipesBase ────────────────── v1.0.2
Installed BufferedStreams ────────────── v1.0.0
Installed IntervalTrees ──────────────── v1.0.0
Installed PopGen ─────────────────────── v0.0.3
Installed JSON ───────────────────────── v0.21.0
Installed BioSequences ───────────────── v1.1.0
Installed PooledArrays ───────────────── v0.5.3
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed EzXML ──────────────────────── v1.1.0
Installed CategoricalArrays ──────────── v0.8.1
Installed StatsBase ──────────────────── v0.33.0
Installed Polynomials ────────────────── v0.8.0
Installed CodecZlib ──────────────────── v0.7.0
Installed Distributions ──────────────── v0.23.8
Installed JLD2 ───────────────────────── v0.1.14
Installed InvertedIndices ────────────── v1.0.0
Installed YAML ───────────────────────── v0.4.0
Installed BGZFStreams ────────────────── v0.3.0
Installed Compat ─────────────────────── v3.13.0
Installed FillArrays ─────────────────── v0.8.13
Installed SpecialFunctions ───────────── v0.10.3
Installed SIMDPirates ────────────────── v0.8.21
Installed CSV ────────────────────────── v0.7.7
Installed GeneticVariation ───────────── v0.4.0
Installed DataFrames ─────────────────── v0.21.5
Installed Libiconv_jll ───────────────── v1.16.0+5
Installed DataAPI ────────────────────── v1.3.0
Installed Missings ───────────────────── v0.4.3
Installed UnPack ─────────────────────── v1.0.1
Installed Combinatorics ──────────────── v0.7.0
Installed Parsers ────────────────────── v1.0.7
Installed OffsetArrays ───────────────── v1.1.2
Installed VectorizationBase ──────────── v0.12.30
Installed OrderedCollections ─────────── v1.3.0
Installed Mocking ────────────────────── v0.7.1
Installed Rmath ──────────────────────── v0.6.1
Installed PDMats ─────────────────────── v0.10.0
Installed TranscodingStreams ─────────── v0.9.5
Installed BioCore ────────────────────── v2.0.5
Installed TimeZones ──────────────────── v1.3.1
Installed StatsFuns ──────────────────── v0.9.5
Installed Automa ─────────────────────── v0.8.0
Installed FileIO ─────────────────────── v1.4.0
Installed BenchmarkTools ─────────────── v0.5.0
Installed DataValueInterfaces ────────── v1.0.0
Installed ExprTools ──────────────────── v0.1.1
Installed SentinelArrays ─────────────── v1.2.10
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Intervals ──────────────────── v1.4.1
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed DocStringExtensions ────────── v0.8.2
Installed Zlib_jll ───────────────────── v1.2.11+15
Installed IndexableBitVectors ────────── v1.0.0
Installed QuadGK ─────────────────────── v2.4.0
Installed MultipleTesting ────────────── v0.4.1
Installed SortingAlgorithms ──────────── v0.3.1
Installed BioSymbols ─────────────────── v3.1.0
Installed Tables ─────────────────────── v1.0.5
Installed SLEEFPirates ───────────────── v0.5.5
Updating `~/.julia/environments/v1.6/Project.toml`
[af524d12] + PopGen v0.0.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[6e4b80f9] + BenchmarkTools v0.5.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[3c28c6f8] + BioSymbols v3.1.0
[e1450e63] + BufferedStreams v1.0.0
[336ed68f] + CSV v0.7.7
[324d7699] + CategoricalArrays v0.8.1
[944b1d66] + CodecZlib v0.7.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] + CpuId v0.2.2
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.21.5
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.23.8
[ffbed154] + DocStringExtensions v0.8.2
[e2ba6199] + ExprTools v0.1.1
[8f5d6c58] + EzXML v1.1.0
[5789e2e9] + FileIO v1.4.0
[1a297f60] + FillArrays v0.8.13
[9bc6ac9d] + GeneticVariation v0.4.0
[1cb3b9ac] + IndexableBitVectors v1.0.0
[524e6230] + IntervalTrees v1.0.0
[d8418881] + Intervals v1.4.1
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.14
[682c06a0] + JSON v0.21.0
[94ce4f54] + Libiconv_jll v1.16.0+5
[bdcacae8] + LoopVectorization v0.8.22
[e1d29d7a] + Missings v0.4.3
[78c3b35d] + Mocking v0.7.1
[f8716d33] + MultipleTesting v0.4.1
[6fe1bfb0] + OffsetArrays v1.1.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.10.0
[69de0a69] + Parsers v1.0.7
[f27b6e38] + Polynomials v0.8.0
[2dfb63ee] + PooledArrays v0.5.3
[af524d12] + PopGen v0.0.3
[1fd47b50] + QuadGK v2.4.0
[3cdcf5f2] + RecipesBase v1.0.2
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[21efa798] + SIMDPirates v0.8.21
[476501e8] + SLEEFPirates v0.5.5
[91c51154] + SentinelArrays v1.2.10
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[2913bbd2] + StatsBase v0.33.0
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[f269a46b] + TimeZones v1.3.1
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.2
[3a884ed6] + UnPack v1.0.1
[3d5dd08c] + VectorizationBase v0.12.30
[02c8fc9c] + XML2_jll v2.9.10+1
[ddb6d928] + YAML v0.4.0
[83775a58] + Zlib_jll v1.2.11+15
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building TimeZones ───→ `~/.julia/packages/TimeZones/cAGJs/deps/build.log`
Building SLEEFPirates → `~/.julia/packages/SLEEFPirates/jGsib/deps/build.log`
Testing PopGen
Status `/tmp/jl_B1uoZI/Project.toml`
[6e4b80f9] BenchmarkTools v0.5.0
[336ed68f] CSV v0.7.7
[a93c6f00] DataFrames v0.21.5
[31c24e10] Distributions v0.23.8
[5789e2e9] FileIO v1.4.0
[9bc6ac9d] GeneticVariation v0.4.0
[033835bb] JLD2 v0.1.14
[bdcacae8] LoopVectorization v0.8.22
[f8716d33] MultipleTesting v0.4.1
[af524d12] PopGen v0.0.3
[2913bbd2] StatsBase v0.33.0
[9a3f8284] Random
[8dfed614] Test
Status `/tmp/jl_B1uoZI/Manifest.toml`
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[6e4b80f9] BenchmarkTools v0.5.0
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[3c28c6f8] BioSymbols v3.1.0
[e1450e63] BufferedStreams v1.0.0
[336ed68f] CSV v0.7.7
[324d7699] CategoricalArrays v0.8.1
[944b1d66] CodecZlib v0.7.0
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[adafc99b] CpuId v0.2.2
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.21.5
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.23.8
[ffbed154] DocStringExtensions v0.8.2
[e2ba6199] ExprTools v0.1.1
[8f5d6c58] EzXML v1.1.0
[5789e2e9] FileIO v1.4.0
[1a297f60] FillArrays v0.8.13
[9bc6ac9d] GeneticVariation v0.4.0
[1cb3b9ac] IndexableBitVectors v1.0.0
[524e6230] IntervalTrees v1.0.0
[d8418881] Intervals v1.4.1
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[033835bb] JLD2 v0.1.14
[682c06a0] JSON v0.21.0
[94ce4f54] Libiconv_jll v1.16.0+5
[bdcacae8] LoopVectorization v0.8.22
[e1d29d7a] Missings v0.4.3
[78c3b35d] Mocking v0.7.1
[f8716d33] MultipleTesting v0.4.1
[6fe1bfb0] OffsetArrays v1.1.2
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.10.0
[69de0a69] Parsers v1.0.7
[f27b6e38] Polynomials v0.8.0
[2dfb63ee] PooledArrays v0.5.3
[af524d12] PopGen v0.0.3
[1fd47b50] QuadGK v2.4.0
[3cdcf5f2] RecipesBase v1.0.2
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[21efa798] SIMDPirates v0.8.21
[476501e8] SLEEFPirates v0.5.5
[91c51154] SentinelArrays v1.2.10
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[2913bbd2] StatsBase v0.33.0
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[f269a46b] TimeZones v1.3.1
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.2
[3a884ed6] UnPack v1.0.1
[3d5dd08c] VectorizationBase v0.12.30
[02c8fc9c] XML2_jll v2.9.10+1
[ddb6d928] YAML v0.4.0
[83775a58] Zlib_jll v1.2.11+15
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
[ Info: Compiling VCF parser...
Test Summary: |
PopGen.jl | No tests
Testing PopGen tests passed