1.6.0-DEV-a6de8b6186.log

Julia Version 1.6.0-DEV.587
Commit a6de8b6186 (2020-08-05 14:09 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
  Installed Requires ──────────────────── v1.0.1
  Installed TableTraits ───────────────── v1.0.0
  Installed IteratorInterfaceExtensions ─ v1.0.0
  Installed ProgressMeter ─────────────── v1.3.2
  Installed MLInterpret ───────────────── v0.1.3
  Installed DataStructures ────────────── v0.17.20
  Installed JSON ──────────────────────── v0.21.0
  Installed StatsBase ─────────────────── v0.33.0
  Installed VersionParsing ────────────── v1.2.0
  Installed PyCallUtils ───────────────── v0.2.2
  Installed Compat ────────────────────── v3.13.0
  Installed DataAPI ───────────────────── v1.3.0
  Installed URIParser ─────────────────── v0.4.1
  Installed Combinatorics ─────────────── v1.0.2
  Installed BinDeps ───────────────────── v1.0.1
  Installed DataValues ────────────────── v0.4.13
  Installed MacroTools ────────────────── v0.5.5
  Installed TableTraitsUtils ──────────── v1.0.1
  Installed Parsers ───────────────────── v1.0.7
  Installed OrderedCollections ────────── v1.3.0
  Installed PandasLite ────────────────── v0.1.7
  Installed Missings ──────────────────── v0.4.3
  Installed PyCall ────────────────────── v1.91.4
  Installed DataValueInterfaces ───────── v1.0.0
  Installed Conda ─────────────────────── v1.4.1
  Installed SortingAlgorithms ─────────── v0.3.1
  Installed BSON ──────────────────────── v0.2.6
Updating `~/.julia/environments/v1.6/Project.toml`
  [8be67bde] + MLInterpret v0.1.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
  [fbb218c0] + BSON v0.2.6
  [9e28174c] + BinDeps v1.0.1
  [861a8166] + Combinatorics v1.0.2
  [34da2185] + Compat v3.13.0
  [8f4d0f93] + Conda v1.4.1
  [9a962f9c] + DataAPI v1.3.0
  [864edb3b] + DataStructures v0.17.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.13
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [8be67bde] + MLInterpret v0.1.3
  [1914dd2f] + MacroTools v0.5.5
  [e1d29d7a] + Missings v0.4.3
  [bac558e1] + OrderedCollections v1.3.0
  [f5117550] + PandasLite v0.1.7
  [69de0a69] + Parsers v1.0.7
  [92933f4c] + ProgressMeter v1.3.2
  [438e738f] + PyCall v1.91.4
  [02651160] + PyCallUtils v0.2.2
  [ae029012] + Requires v1.0.1
  [a2af1166] + SortingAlgorithms v0.3.1
  [2913bbd2] + StatsBase v0.33.0
  [3783bdb8] + TableTraits v1.0.0
  [382cd787] + TableTraitsUtils v1.0.1
  [30578b45] + URIParser v0.4.1
  [81def892] + VersionParsing v1.2.0
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8bb1440f] + DelimitedFiles
  [8ba89e20] + Distributed
  [b77e0a4c] + InteractiveUtils
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [44cfe95a] + Pkg
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays
  [10745b16] + Statistics
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
   Building Conda ──────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
   Building PyCall ─────→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
   Building PandasLite ─→ `~/.julia/packages/PandasLite/7e29y/deps/build.log`
┌ Error: Error building `PandasLite`: 
│ /usr/bin/python3: No module named pip
│ ERROR: LoadError: failed process: Process(`python3 -m pip install --upgrade pip`, ProcessExited(1)) [1]
│ 
│ Stacktrace:
│  [1] pipeline_error
│    @ ./process.jl:525 [inlined]
│  [2] run(::Cmd; wait::Bool)
│    @ Base ./process.jl:440
│  [3] run(::Cmd)
│    @ Base ./process.jl:438
│  [4] top-level scope
│    @ ~/.julia/packages/PandasLite/7e29y/deps/build.jl:3
│  [5] include(fname::String)
│    @ Base.MainInclude ./client.jl:443
│  [6] top-level scope
│    @ none:5
│ in expression starting at /home/pkgeval/.julia/packages/PandasLite/7e29y/deps/build.jl:3
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:943
   Building MLInterpret → `~/.julia/packages/MLInterpret/oNs6c/deps/build.log`
┌ Error: Error building `MLInterpret`: 
│ Reading package lists...
│ Building dependency tree...
│ Reading state information...
│ g++ is already the newest version (4:7.4.0-1ubuntu2.3).
│ g++ set to manually installed.
│ 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
│ Reading package lists...
│ Building dependency tree...
│ Reading state information...
│ E: Unable to locate package graphviz
│ ERROR: LoadError: failed process: Process(`sudo apt-get install -y graphviz`, ProcessExited(100)) [100]
│ 
│ Stacktrace:
│  [1] pipeline_error
│    @ ./process.jl:525 [inlined]
│  [2] run(::Cmd; wait::Bool)
│    @ Base ./process.jl:440
│  [3] run(::Cmd)
│    @ Base ./process.jl:438
│  [4] top-level scope
│    @ ~/.julia/packages/MLInterpret/oNs6c/deps/build.jl:32
│  [5] include(fname::String)
│    @ Base.MainInclude ./client.jl:443
│  [6] top-level scope
│    @ none:5
│ in expression starting at /home/pkgeval/.julia/packages/MLInterpret/oNs6c/deps/build.jl:27
│ Installing dependency g++ via `sudo apt-get install g++`:
│ Installing dependency graphviz via `sudo apt-get install graphviz`:
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:943
    Testing MLInterpret
Status `/tmp/jl_XUQRDv/Project.toml`
  [9e28174c] BinDeps v1.0.1
  [861a8166] Combinatorics v1.0.2
  [8be67bde] MLInterpret v0.1.3
  [f5117550] PandasLite v0.1.7
  [92933f4c] ProgressMeter v1.3.2
  [438e738f] PyCall v1.91.4
  [02651160] PyCallUtils v0.2.2
  [2913bbd2] StatsBase v0.33.0
  [8ba89e20] Distributed
  [44cfe95a] Pkg
  [9a3f8284] Random
  [10745b16] Statistics
Status `/tmp/jl_XUQRDv/Manifest.toml`
  [fbb218c0] BSON v0.2.6
  [9e28174c] BinDeps v1.0.1
  [861a8166] Combinatorics v1.0.2
  [34da2185] Compat v3.13.0
  [8f4d0f93] Conda v1.4.1
  [9a962f9c] DataAPI v1.3.0
  [864edb3b] DataStructures v0.17.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [e7dc6d0d] DataValues v0.4.13
  [82899510] IteratorInterfaceExtensions v1.0.0
  [682c06a0] JSON v0.21.0
  [8be67bde] MLInterpret v0.1.3
  [1914dd2f] MacroTools v0.5.5
  [e1d29d7a] Missings v0.4.3
  [bac558e1] OrderedCollections v1.3.0
  [f5117550] PandasLite v0.1.7
  [69de0a69] Parsers v1.0.7
  [92933f4c] ProgressMeter v1.3.2
  [438e738f] PyCall v1.91.4
  [02651160] PyCallUtils v0.2.2
  [ae029012] Requires v1.0.1
  [a2af1166] SortingAlgorithms v0.3.1
  [2913bbd2] StatsBase v0.33.0
  [3783bdb8] TableTraits v1.0.0
  [382cd787] TableTraitsUtils v1.0.1
  [30578b45] URIParser v0.4.1
  [81def892] VersionParsing v1.2.0
  [2a0f44e3] Base64
  [ade2ca70] Dates
  [8bb1440f] DelimitedFiles
  [8ba89e20] Distributed
  [b77e0a4c] InteractiveUtils
  [76f85450] LibGit2
  [8f399da3] Libdl
  [37e2e46d] LinearAlgebra
  [56ddb016] Logging
  [d6f4376e] Markdown
  [a63ad114] Mmap
  [44cfe95a] Pkg
  [de0858da] Printf
  [3fa0cd96] REPL
  [9a3f8284] Random
  [ea8e919c] SHA
  [9e88b42a] Serialization
  [1a1011a3] SharedArrays
  [6462fe0b] Sockets
  [2f01184e] SparseArrays
  [10745b16] Statistics
  [8dfed614] Test
  [cf7118a7] UUIDs
  [4ec0a83e] Unicode
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:326 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:137 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:55.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/pyiterator.jl:137 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:55.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:53.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:52.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:51.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:335 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:46.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:50.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:49.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:48.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:326 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:45.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{PyCall.PyObject})(Base.Colon) in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:38 overwritten in module PandasLite at /home/pkgeval/.julia/packages/PandasLite/7e29y/src/PandasLite.jl:117.
  ** incremental compilation may be fatally broken for this module **

ERROR: LoadError: InitError: PyError (PyImport_ImportModule

The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.

PyCall is currently configured to use the Python version at:

/usr/bin/python3

and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.

One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.

Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia.  As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).

) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)

Stacktrace:
  [1] pyimport(name::String)
    @ PyCall ~/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
  [2] pyimport_conda(modulename::String, condapkg::String, channel::String)
    @ PyCall ~/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
  [3] pyimport_conda
    @ ~/.julia/packages/PyCall/zqDXB/src/PyCall.jl:693 [inlined]
  [4] __init__()
    @ PandasLite ~/.julia/packages/PandasLite/7e29y/src/PandasLite.jl:18
  [5] _include_from_serialized(path::String, depmods::Vector{Any})
    @ Base ./loading.jl:697
  [6] _require_from_serialized(path::String)
    @ Base ./loading.jl:749
  [7] _require(pkg::Base.PkgId)
    @ Base ./loading.jl:1040
  [8] require(uuidkey::Base.PkgId)
    @ Base ./loading.jl:928
  [9] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:923
 [10] include
    @ ./Base.jl:375 [inlined]
 [11] include_package_for_output(input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId,UInt64}}, uuid_tuple::Tuple{UInt64,UInt64}, source::String)
    @ Base ./loading.jl:1219
 [12] top-level scope
    @ none:1
 [13] eval
    @ ./boot.jl:344 [inlined]
 [14] eval(x::Expr)
    @ Base.MainInclude ./client.jl:445
 [15] top-level scope
    @ none:1
during initialization of module PandasLite
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/oNs6c/src/MLInterpret.jl:1
ERROR: LoadError: Failed to precompile MLInterpret [8be67bde-e6c3-11e9-38b8-61e71f321663] to /home/pkgeval/.julia/compiled/v1.6/MLInterpret/bHwGA_4wNBV.ji.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1350
 [3] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1030
 [4] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:928
 [5] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:923
 [6] include(fname::String)
   @ Base.MainInclude ./client.jl:443
 [7] top-level scope
   @ none:6
in expression starting at /home/pkgeval/.julia/packages/MLInterpret/oNs6c/test/runtests.jl:1
ERROR: Package MLInterpret errored during testing
Stacktrace:
  [1] pkgerror(::String, ::Vararg{String,N} where N)
    @ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
    @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1567
  [3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
    @ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
    @ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
  [5] #test#62
    @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
  [6] test
    @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
  [7] #test#61
    @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
  [8] test
    @ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
  [9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
    @ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
 [10] test(pkg::String)
    @ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
 [11] top-level scope
    @ none:16