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1.6.0-DEV-a6de8b6186.log
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Julia Version 1.6.0-DEV.587
Commit a6de8b6186 (2020-08-05 14:09 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed XML2_jll ───────────────────── v2.9.10+1
Installed Blosc_jll ──────────────────── v1.14.3+1
Installed Reexport ───────────────────── v0.2.0
Installed Blosc ──────────────────────── v0.7.0
Installed MortarContact2D ────────────── v0.3.1
Installed Arpack ─────────────────────── v0.4.0
Installed Tensors ────────────────────── v1.4.2
Installed Nullables ──────────────────── v1.0.0
Installed OpenBLAS_jll ───────────────── v0.3.9+5
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Lz4_jll ────────────────────── v1.9.2+2
Installed FEMQuad ────────────────────── v0.3.2
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed AsterReader ────────────────── v0.2.3
Installed FEMBase ────────────────────── v0.3.0
Installed SpecialFunctions ───────────── v0.10.3
Installed DiffRules ──────────────────── v1.0.1
Installed Libiconv_jll ───────────────── v1.16.0+5
Installed TimerOutputs ───────────────── v0.5.6
Installed HDF5 ───────────────────────── v0.13.3
Installed Calculus ───────────────────── v0.5.1
Installed NaNMath ────────────────────── v0.3.4
Installed SIMD ───────────────────────── v2.8.0
Installed MacroTools ─────────────────── v0.5.5
Installed StaticArrays ───────────────── v0.12.4
Installed AbaqusReader ───────────────── v0.2.5
Installed ForwardDiff ────────────────── v0.10.12
Installed FEMBasis ───────────────────── v0.3.1
Installed Zstd_jll ───────────────────── v1.4.5+0
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed HDF5_jll ───────────────────── v1.10.5+5
Installed MortarContact2DAD ──────────── v0.2.0
Installed HeatTransfer ───────────────── v0.3.1
Installed DiffResults ────────────────── v1.0.2
Installed Zlib_jll ───────────────────── v1.2.11+15
Installed FEMBeam ────────────────────── v0.3.1
Installed LightXML ───────────────────── v0.9.0
Installed CommonSubexpressions ───────── v0.3.0
Installed JuliaFEM ───────────────────── v0.5.1
Updating `~/.julia/environments/v1.6/Project.toml`
[f80590ac] + JuliaFEM v0.5.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[bc6b9049] + AbaqusReader v0.2.5
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[cb1a753d] + AsterReader v0.2.3
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[49dc2e85] + Calculus v0.5.1
[bbf7d656] + CommonSubexpressions v0.3.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[fbcbbc08] + FEMBase v0.3.0
[353fb843] + FEMBasis v0.3.1
[962f5c4a] + FEMBeam v0.3.1
[be8e8821] + FEMQuad v0.3.2
[f6369f11] + ForwardDiff v0.10.12
[f67ccb44] + HDF5 v0.13.3
[0234f1f7] + HDF5_jll v1.10.5+5
[4030f512] + HeatTransfer v0.3.1
[f80590ac] + JuliaFEM v0.5.1
[94ce4f54] + Libiconv_jll v1.16.0+5
[9c8b4983] + LightXML v0.9.0
[5ced341a] + Lz4_jll v1.9.2+2
[1914dd2f] + MacroTools v0.5.5
[048d6160] + MortarContact2D v0.3.1
[c1673bdb] + MortarContact2DAD v0.2.0
[77ba4419] + NaNMath v0.3.4
[4d1e1d77] + Nullables v1.0.0
[4536629a] + OpenBLAS_jll v0.3.9+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[189a3867] + Reexport v0.2.0
[fdea26ae] + SIMD v2.8.0
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[48a634ad] + Tensors v1.4.2
[a759f4b9] + TimerOutputs v0.5.6
[02c8fc9c] + XML2_jll v2.9.10+1
[83775a58] + Zlib_jll v1.2.11+15
[3161d3a3] + Zstd_jll v1.4.5+0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building HDF5 → `~/.julia/packages/HDF5/QXcoh/deps/build.log`
Testing JuliaFEM
Status `/tmp/jl_GYcdCS/Project.toml`
[bc6b9049] AbaqusReader v0.2.5
[7d9fca2a] Arpack v0.4.0
[cb1a753d] AsterReader v0.2.3
[fbcbbc08] FEMBase v0.3.0
[353fb843] FEMBasis v0.3.1
[962f5c4a] FEMBeam v0.3.1
[be8e8821] FEMQuad v0.3.2
[f6369f11] ForwardDiff v0.10.12
[f67ccb44] HDF5 v0.13.3
[4030f512] HeatTransfer v0.3.1
[f80590ac] JuliaFEM v0.5.1
[9c8b4983] LightXML v0.9.0
[048d6160] MortarContact2D v0.3.1
[c1673bdb] MortarContact2DAD v0.2.0
[189a3867] Reexport v0.2.0
[a759f4b9] TimerOutputs v0.5.6
[37e2e46d] LinearAlgebra
[3fa0cd96] REPL
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_GYcdCS/Manifest.toml`
[bc6b9049] AbaqusReader v0.2.5
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[cb1a753d] AsterReader v0.2.3
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[49dc2e85] Calculus v0.5.1
[bbf7d656] CommonSubexpressions v0.3.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[fbcbbc08] FEMBase v0.3.0
[353fb843] FEMBasis v0.3.1
[962f5c4a] FEMBeam v0.3.1
[be8e8821] FEMQuad v0.3.2
[f6369f11] ForwardDiff v0.10.12
[f67ccb44] HDF5 v0.13.3
[0234f1f7] HDF5_jll v1.10.5+5
[4030f512] HeatTransfer v0.3.1
[f80590ac] JuliaFEM v0.5.1
[94ce4f54] Libiconv_jll v1.16.0+5
[9c8b4983] LightXML v0.9.0
[5ced341a] Lz4_jll v1.9.2+2
[1914dd2f] MacroTools v0.5.5
[048d6160] MortarContact2D v0.3.1
[c1673bdb] MortarContact2DAD v0.2.0
[77ba4419] NaNMath v0.3.4
[4d1e1d77] Nullables v1.0.0
[4536629a] OpenBLAS_jll v0.3.9+5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[189a3867] Reexport v0.2.0
[fdea26ae] SIMD v2.8.0
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[48a634ad] Tensors v1.4.2
[a759f4b9] TimerOutputs v0.5.6
[02c8fc9c] XML2_jll v2.9.10+1
[83775a58] Zlib_jll v1.2.11+15
[3161d3a3] Zstd_jll v1.4.5+0
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Package FEMBase does not have TimerOutputs in its dependencies:
│ - If you have FEMBase checked out for development and have
│ added TimerOutputs as a dependency but haven't updated your primary
│ environment's manifest file, try `Pkg.resolve()`.
│ - Otherwise you may need to report an issue with FEMBase
└ Loading TimerOutputs into FEMBase from project dependency, future warnings for FEMBase are suppressed.
ERROR: LoadError: LoadError: Evaluation into the closed module `Calculus` breaks incremental compilation because the side effects will not be permanent. This is likely due to some other module mutating `Calculus` with `eval` during precompilation - don't do this.
Stacktrace:
[1] eval
@ ./boot.jl:344 [inlined]
[2] simplify(ex::Expr)
@ Calculus ~/.julia/packages/Calculus/mbqhh/src/symbolic.jl:96
[3] calculate_interpolation_polynomials(p::Expr, V::Matrix{Float64})
@ FEMBasis ~/.julia/packages/FEMBasis/HGQ0U/src/create_basis.jl:23
[4] create_basis(name::Symbol, description::String, X::Vector{Tuple{Float64}}, p::Expr)
@ FEMBasis ~/.julia/packages/FEMBasis/HGQ0U/src/create_basis.jl:45
[5] create_basis_and_eval(::Symbol, ::Vararg{Any,N} where N)
@ FEMBasis ~/.julia/packages/FEMBasis/HGQ0U/src/create_basis.jl:116
[6] top-level scope
@ ~/.julia/packages/FEMBasis/HGQ0U/src/lagrange_segments.jl:4
[7] include
@ ./Base.jl:375 [inlined]
[8] include(x::String)
@ FEMBasis ~/.julia/packages/FEMBasis/HGQ0U/src/FEMBasis.jl:4
[9] top-level scope
@ ~/.julia/packages/FEMBasis/HGQ0U/src/FEMBasis.jl:29
[10] include
@ ./Base.jl:375 [inlined]
[11] include_package_for_output(input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId,UInt64}}, uuid_tuple::Tuple{UInt64,UInt64}, source::String)
@ Base ./loading.jl:1219
[12] top-level scope
@ none:1
[13] eval
@ ./boot.jl:344 [inlined]
[14] eval(x::Expr)
@ Base.MainInclude ./client.jl:445
[15] top-level scope
@ none:1
in expression starting at /home/pkgeval/.julia/packages/FEMBasis/HGQ0U/src/lagrange_segments.jl:4
in expression starting at /home/pkgeval/.julia/packages/FEMBasis/HGQ0U/src/FEMBasis.jl:4
ERROR: LoadError: Failed to precompile FEMBasis [353fb843-c566-51e6-ba49-78b3e3d5ebb5] to /home/pkgeval/.julia/compiled/v1.6/FEMBasis/x3cNT_UUtrV.ji.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1350
[3] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1030
[4] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:928
[5] require(into::Module, mod::Symbol)
@ Base ./loading.jl:923
[6] include
@ ./Base.jl:375 [inlined]
[7] include_package_for_output(input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId,UInt64}}, uuid_tuple::Tuple{UInt64,UInt64}, source::String)
@ Base ./loading.jl:1219
[8] top-level scope
@ none:1
[9] eval
@ ./boot.jl:344 [inlined]
[10] eval(x::Expr)
@ Base.MainInclude ./client.jl:445
[11] top-level scope
@ none:1
in expression starting at /home/pkgeval/.julia/packages/FEMBase/1R4fe/src/FEMBase.jl:4
ERROR: LoadError: Failed to precompile FEMBase [fbcbbc08-f1bf-5204-9233-b69f5d396135] to /home/pkgeval/.julia/compiled/v1.6/FEMBase/6HUoq_UUtrV.ji.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1350
[3] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1030
[4] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:928
[5] require(into::Module, mod::Symbol)
@ Base ./loading.jl:923
[6] include
@ ./Base.jl:375 [inlined]
[7] include_package_for_output(input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId,UInt64}}, uuid_tuple::Tuple{UInt64,UInt64}, source::String)
@ Base ./loading.jl:1219
[8] top-level scope
@ none:1
[9] eval
@ ./boot.jl:344 [inlined]
[10] eval(x::Expr)
@ Base.MainInclude ./client.jl:445
[11] top-level scope
@ none:1
in expression starting at /home/pkgeval/.julia/packages/JuliaFEM/DbhTT/src/JuliaFEM.jl:4
ERROR: LoadError: Failed to precompile JuliaFEM [f80590ac-b429-510a-8a99-e7c46989f22d] to /home/pkgeval/.julia/compiled/v1.6/JuliaFEM/JKouA_UUtrV.ji.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] compilecache(pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1350
[3] _require(pkg::Base.PkgId)
@ Base ./loading.jl:1030
[4] require(uuidkey::Base.PkgId)
@ Base ./loading.jl:928
[5] require(into::Module, mod::Symbol)
@ Base ./loading.jl:923
[6] include(fname::String)
@ Base.MainInclude ./client.jl:443
[7] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/JuliaFEM/DbhTT/test/runtests.jl:4
ERROR: Package JuliaFEM errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1567
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:16