-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path1.6.0-DEV-8a6656016b.log
196 lines (194 loc) · 7.89 KB
/
1.6.0-DEV-8a6656016b.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
Julia Version 1.6.0-DEV.580
Commit 8a6656016b (2020-08-04 16:02 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Libiconv_jll ─────── v1.16.0+5
Installed XML2_jll ─────────── v2.9.10+1
Installed Zlib_jll ─────────── v1.2.11+15
Installed XMLDict ──────────── v0.4.1
Installed Parsers ──────────── v1.0.7
Installed OrderedCollections ─ v1.3.0
Installed BioServices ──────── v0.3.2
Installed JSON ─────────────── v0.21.0
Installed MbedTLS_jll ──────── v2.16.6+1
Installed IniFile ──────────── v0.5.0
Installed Gumbo_jll ────────── v0.10.1+0
Installed EzXML ────────────── v1.1.0
Installed Gumbo ────────────── v0.8.0
Installed HTTP ─────────────── v0.8.17
Installed IterTools ────────── v1.3.0
Installed MbedTLS ──────────── v1.0.2
Installed AbstractTrees ────── v0.3.3
Updating `~/.julia/environments/v1.6/Project.toml`
[a0d4ced5] + BioServices v0.3.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[a0d4ced5] + BioServices v0.3.2
[8f5d6c58] + EzXML v1.1.0
[708ec375] + Gumbo v0.8.0
[528830af] + Gumbo_jll v0.10.1+0
[cd3eb016] + HTTP v0.8.17
[83e8ac13] + IniFile v0.5.0
[c8e1da08] + IterTools v1.3.0
[682c06a0] + JSON v0.21.0
[94ce4f54] + Libiconv_jll v1.16.0+5
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.6+1
[bac558e1] + OrderedCollections v1.3.0
[69de0a69] + Parsers v1.0.7
[02c8fc9c] + XML2_jll v2.9.10+1
[228000da] + XMLDict v0.4.1
[83775a58] + Zlib_jll v1.2.11+15
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing BioServices
Status `/tmp/jl_1Fhm5o/Project.toml`
[a0d4ced5] BioServices v0.3.2
[708ec375] Gumbo v0.8.0
[cd3eb016] HTTP v0.8.17
[682c06a0] JSON v0.21.0
[228000da] XMLDict v0.4.1
[ade2ca70] Dates
[8dfed614] Test
Status `/tmp/jl_1Fhm5o/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[a0d4ced5] BioServices v0.3.2
[8f5d6c58] EzXML v1.1.0
[708ec375] Gumbo v0.8.0
[528830af] Gumbo_jll v0.10.1+0
[cd3eb016] HTTP v0.8.17
[83e8ac13] IniFile v0.5.0
[c8e1da08] IterTools v1.3.0
[682c06a0] JSON v0.21.0
[94ce4f54] Libiconv_jll v1.16.0+5
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.6+1
[bac558e1] OrderedCollections v1.3.0
[69de0a69] Parsers v1.0.7
[02c8fc9c] XML2_jll v2.9.10+1
[228000da] XMLDict v0.4.1
[83775a58] Zlib_jll v1.2.11+15
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running tests:
-----------------------------------------
-----------------------------------------
Testing: EUtils
-----------------------------------------
-----------------------------------------
espell: Error During Test at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:137
Got exception outside of a @test
MethodError: no method matching getindex(::SubString{String}, ::String)
Closest candidates are:
getindex(::SubString, !Matched::Integer) at strings/substring.jl:82
getindex(::AbstractString, !Matched::Colon) at strings/basic.jl:187
getindex(::AbstractString, !Matched::Integer) at strings/basic.jl:182
...
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:144
[2] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1114
[3] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:138
[4] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1114
[5] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/eutils.jl:4
[6] include
@ ./Base.jl:375 [inlined]
[7] include(x::String)
@ Main.TestBioServices ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
[8] top-level scope
@ ~/.julia/packages/BioServices/KPZxN/test/runtests.jl:23
[9] include(fname::String)
@ Base.MainInclude ./client.jl:443
[10] top-level scope
@ none:6
[11] eval(m::Module, e::Any)
@ Core ./boot.jl:344
[12] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:260
[13] _start()
@ Base ./client.jl:484
Test Summary: | Pass Error Total
EUtils | 44 1 45
einfo | 4 4
esearch | 4 4
epost | 5 5
esummary | 12 12
efetch | 9 9
elink | 3 3
egquery | 3 3
espell | 3 1 4
ecitmatch | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 44 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/eutils.jl:2
in expression starting at /home/pkgeval/.julia/packages/BioServices/KPZxN/test/runtests.jl:1
ERROR: Package BioServices errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1567
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:16