-
Notifications
You must be signed in to change notification settings - Fork 5
/
Copy path1.6.0-DEV-a6de8b6186.log
354 lines (352 loc) · 16.2 KB
/
1.6.0-DEV-a6de8b6186.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
Julia Version 1.6.0-DEV.587
Commit a6de8b6186 (2020-08-05 14:09 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
[ Info: LEGAL NOTICE: package operations send anonymous data about your system to https://pkg.julialang.org (your current package server), including the operating system and Julia versions you are using, and a random client UUID. Running `Pkg.telemetryinfo()` will show exactly what data is sent. See https://julialang.org/legal/data/ for more details about what this data is used for, how long it is retained, and how to opt out of sending it.
Installed Requires ───────────────────── v1.0.1
Installed FilePathsBase ──────────────── v0.7.0
Installed TableTraits ────────────────── v1.0.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed NLSolversBase ──────────────── v7.6.1
Installed LineSearches ───────────────── v7.0.1
Installed DataStructures ─────────────── v0.17.20
Installed Autologistic ───────────────── v0.4.2
Installed OpenBLAS_jll ───────────────── v0.3.9+5
Installed Arpack ─────────────────────── v0.4.0
Installed Reexport ───────────────────── v0.2.0
Installed Inflate ────────────────────── v0.1.2
Installed JSON ───────────────────────── v0.21.0
Installed ArnoldiMethod ──────────────── v0.0.4
Installed LightGraphs ────────────────── v1.3.3
Installed SimpleTraits ───────────────── v0.9.2
Installed PooledArrays ───────────────── v0.5.3
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed CategoricalArrays ──────────── v0.7.7
Installed StatsBase ──────────────────── v0.32.2
Installed Distributions ──────────────── v0.22.6
Installed Optim ──────────────────────── v0.20.6
Installed InvertedIndices ────────────── v1.0.0
Installed PositiveFactorizations ─────── v0.2.3
Installed Compat ─────────────────────── v3.13.0
Installed FillArrays ─────────────────── v0.8.13
Installed SpecialFunctions ───────────── v0.10.3
Installed DiffRules ──────────────────── v1.0.1
Installed CSV ────────────────────────── v0.5.26
Installed DataFrames ─────────────────── v0.20.2
Installed Missings ───────────────────── v0.4.3
Installed Parsers ────────────────────── v0.3.12
Installed UnPack ─────────────────────── v1.0.1
Installed DataAPI ────────────────────── v1.3.0
Installed NaNMath ────────────────────── v0.3.4
Installed MacroTools ─────────────────── v0.5.5
Installed ForwardDiff ────────────────── v0.10.12
Installed StaticArrays ───────────────── v0.12.4
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed PDMats ─────────────────────── v0.9.12
Installed DataValueInterfaces ────────── v1.0.0
Installed Rmath ──────────────────────── v0.6.1
Installed DiffResults ────────────────── v1.0.2
Installed StatsFuns ──────────────────── v0.9.5
Installed OrderedCollections ─────────── v1.3.0
Installed WeakRefStrings ─────────────── v0.6.2
Installed CommonSubexpressions ───────── v0.3.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed ArrayInterface ─────────────── v2.11.0
Installed QuadGK ─────────────────────── v2.4.0
Installed Tables ─────────────────────── v1.0.5
Installed FiniteDiff ─────────────────── v2.5.2
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed Parameters ─────────────────── v0.12.1
Updating `~/.julia/environments/v1.6/Project.toml`
[4d03fd4d] + Autologistic v0.4.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.11.0
[4d03fd4d] + Autologistic v0.4.2
[336ed68f] + CSV v0.5.26
[324d7699] + CategoricalArrays v0.7.7
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.13.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[31c24e10] + Distributions v0.22.6
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.13
[6a86dc24] + FiniteDiff v2.5.2
[f6369f11] + ForwardDiff v0.10.12
[d25df0c9] + Inflate v0.1.2
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[093fc24a] + LightGraphs v1.3.3
[d3d80556] + LineSearches v7.0.1
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.4
[4536629a] + OpenBLAS_jll v0.3.9+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.20.6
[bac558e1] + OrderedCollections v1.3.0
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v0.3.12
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.4.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[699a6c99] + SimpleTraits v0.9.2
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[3a884ed6] + UnPack v1.0.1
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Autologistic
Status `/tmp/jl_FX3btT/Project.toml`
[4d03fd4d] Autologistic v0.4.2
[336ed68f] CSV v0.5.26
[31c24e10] Distributions v0.22.6
[093fc24a] LightGraphs v1.3.3
[429524aa] Optim v0.20.6
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_FX3btT/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.11.0
[4d03fd4d] Autologistic v0.4.2
[336ed68f] CSV v0.5.26
[324d7699] CategoricalArrays v0.7.7
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.13.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[31c24e10] Distributions v0.22.6
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.13
[6a86dc24] FiniteDiff v2.5.2
[f6369f11] ForwardDiff v0.10.12
[d25df0c9] Inflate v0.1.2
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[093fc24a] LightGraphs v1.3.3
[d3d80556] LineSearches v7.0.1
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.4
[4536629a] OpenBLAS_jll v0.3.9+5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.20.6
[bac558e1] OrderedCollections v1.3.0
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v0.3.12
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.4.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[699a6c99] SimpleTraits v0.9.2
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[3a884ed6] UnPack v1.0.1
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Running tests:
Test Summary: | Pass Total
FullUnary constructors and interfaces | 8 8
Test Summary: | Pass Total
LinPredUnary constructors and interfaces | 7 7
Test Summary: | Pass Total
SimplePairwise constructors and interfaces | 6 6
Test Summary: | Pass Total
FullPairwise constructors and interfaces | 5 5
Test Summary: | Pass Total
ALRsimple constructors | 8 8
Test Summary: | Pass Total
ALsimple constructors | 14 14
Test Summary: | Pass Total
ALfull constructors | 7 7
Test Summary: | Pass Total
Helper functions | 15 15
Test Summary: | Pass Total
almodel_functions | 18 18
Test Summary: | Pass Total
samplers | 17 17
Calling Optim.optimize with BFGS method...
Iter Function value Gradient norm
0 6.025906e+00 7.306846e-01
* time: 6.699562072753906e-5
1 6.014610e+00 1.524670e-01
* time: 0.868894100189209
2 6.013707e+00 7.146872e-02
* time: 0.9957020282745361
3 6.013491e+00 2.133966e-03
* time: 1.1514151096343994
4 6.013491e+00 9.904243e-06
* time: 1.3063421249389648
5 6.013491e+00 9.533817e-10
* time: 1.4602630138397217
Approximating the Hessian at the MLE...
Getting standard errors...
...completed successfully.
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:558
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:324
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:324
┌ Warning: Optim.optimize did not succeed. Model parameters have not been changed.
└ @ Autologistic ~/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:324
ML and PL Estimation: Error During Test at /home/pkgeval/.julia/packages/Autologistic/Ta8VT/test/runtests.jl:361
Got exception outside of a @test
DimensionMismatch("tried to assign 0-element array to 2×1 destination")
Stacktrace:
[1] throw_setindex_mismatch(X::Vector{Float64}, I::Tuple{Int64,Int64})
@ Base ./indices.jl:193
[2] setindex_shape_check
@ ./indices.jl:245 [inlined]
[3] _unsafe_setindex!(::IndexLinear, ::Matrix{Float64}, ::Vector{Float64}, ::Base.Slice{Base.OneTo{Int64}}, ::Int64)
@ Base ./multidimensional.jl:810
[4] _setindex!
@ ./multidimensional.jl:801 [inlined]
[5] setindex!(::Matrix{Float64}, ::Vector{Float64}, ::Function, ::Int64)
@ Base ./abstractarray.jl:1216
[6] top-level scope
@ ~/.julia/packages/Autologistic/Ta8VT/test/runtests.jl:399
[7] top-level scope
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1114
[8] top-level scope
@ ~/.julia/packages/Autologistic/Ta8VT/test/runtests.jl:362
[9] include(fname::String)
@ Base.MainInclude ./client.jl:443
[10] top-level scope
@ none:6
[11] eval(m::Module, e::Any)
@ Core ./boot.jl:344
[12] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:260
[13] _start()
@ Base ./client.jl:484
Test Summary: | Pass Error Total
ML and PL Estimation | 13 1 14
ERROR: LoadError: Some tests did not pass: 13 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Autologistic/Ta8VT/test/runtests.jl:361
ERROR: Package Autologistic errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N)
@ Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1567
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:328
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:315
[5] #test#62
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[6] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:67 [inlined]
[7] #test#61
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}})
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:16