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pyproject.toml
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[tool.poetry]
authors = ["Adam Gayoso <adamgayoso@berkeley.edu>", "Jonathan Shor <jonathan.shor@nyu.edu>", "Ambrose Carr"]
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"Natural Language :: English",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX :: Linux",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
description = "Method to detect and enable removal of doublets from single-cell RNA-sequencing."
documentation = "https://doubletdetection.readthedocs.io/"
homepage = "https://github.com/JonathanShor/DoubletDetection"
license = "MIT"
name = "doubletdetection"
packages = [
{include = "doubletdetection"},
]
readme = "README.md"
version = "4.2"
[tool.poetry.dependencies]
anndata = ">=0.6"
black = {version = ">=20.8b1", optional = true}
flake8 = {version = ">=3.7.7", optional = true}
furo = {version = "*", optional = true}
ipywidgets = "*"
leidenalg = "*"
louvain = "*"
matplotlib = ">=3.1"
myst-parser = {version = "*", optional = true}
nbsphinx = {version = "*", optional = true}
nbsphinx-link = {version = "*", optional = true}
numpy = ">=1.14.2"
pandas = ">=0.22.0"
phenograph = "*"
pre-commit = {version = ">=2.7.1", optional = true}
pytest = {version = ">=4.4", optional = true}
python = ">=3.6.1,<4.0"
scanpy = ">1.4.4"
scipy = ">=1.0.1"
sphinx = {version = ">=4.1,<4.4", optional = true}
sphinx-autodoc-typehints = {version = "*", optional = true}
tqdm = "*"
[tool.poetry.extras]
dev = ["black", "pytest", "flake8", "pre-commit"]
docs = ["nbsphinx", "sphinx", "sphinx-autodoc-typehints", "nbsphinx-link", "furo", "myst-parser"]
[tool.black]
exclude = '''
(
/(
\.eggs # exclude a few common directories in the
| \.git # root of the project
| \.mypy_cache
| \.venv
)/
)
'''
include = '\.pyi?$'
line-length = 99
target_version = ['py37']
[build-system]
build-backend = "poetry.masonry.api"
requires = [
"poetry>=1.0",
"setuptools", # keep it here or "pip install -e" would fail
]