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John Giorgi edited this page Mar 30, 2020 · 30 revisions

Compute Canada

This page serves as internal documentation for setting up the project on one of Compute Canada's clusters.

Install

The following bash script can be saved to setup.sh and run on a Compute Canada cluster to set the project up. Once the script has completed running, you will have installed the project and all dependencies to $WORK, and the virtual environment you created at $ENV will be active.

Note: For the time being, you will need to comment out the transformers dependency of the setup.py file of AllenNLP before calling pip install --editable .

setup.sh

#!/bin/bash

PROJECT_NAME="t2t"
ENV="$HOME/$PROJECT_NAME"
WORK="$SCRATCH/t2t"
mkdir -p $WORK
​
module load python/3.7 cuda/10.1
​
# Create and activate a virtual environment
virtualenv --no-download $ENV
source $ENV/bin/activate
pip install --no-index --upgrade pip
​
# (TEMP) Install Transformers manually
pip install transformers==2.3.0
​
# Install AllenNLP from source
cd $WORK
git clone https://github.com/allenai/allennlp.git
cd allennlp
# *YOU NEED TO VIM SETUP.PY AND COMMENT OUT THE "TRANSFORMERS" DEPENDENCY*
pip install --editable .
cd ../
​
# Install the project
git clone https://github.com/JohnGiorgi/t2t.git
cd t2t
pip install --editable .

Training

Once setup.sh has been run successfully, the script train.sh can be submitted with sbatch train.sh in order to schedule a job. A few things of note:

  • All hyperparameters are selected in the JSON file at $CONFIG_FILEPATH. If you want to make quick changes at the command line, you can use --overrides, e.g. --overrides '{"data_loader.batch_size": 16} to modify the config in place.
  • All output is saved to $OUTPUT.
  • Tensorboard logs exist at $OUTPUT/log, so you can call tensorboard --log-dir $OUTPUT/log to view them. Note however, that the compute nodes are air-gapped, so you will need to copy $OUTPUT/log to a login node, or your local computer, before running tensorboard.
  • In train.sh, there is an example call with salloc, which you can use to request the job interactively (for things like debugging). These jobs should be short.

train.sh

#!/bin/bash
# Requested resources
#SBATCH --mem=32G
#SBATCH --cpus-per-task=10
#SBATCH --gres=gpu:1
# Wall time and job details
#SBATCH --time=24:00:00
#SBATCH --job-name=t2t-train
# Emails me when job starts, ends or fails
#SBATCH --mail-user=user@example.com
#SBATCH --mail-type=END,FAIL
# Use this command to run the same job interactively
# salloc --mem=32G --cpus-per-task=10 --gres=gpu:1 --time=3:00:00
​
PROJECT_NAME="t2t"
ENV="$HOME/$PROJECT_NAME"
OUTPUT="$SCRATCH/$PROJECT_NAME"
WORK="$SCRATCH/$PROJECT_NAME/$PROJECT_NAME"
​
# Path to the AllenNLP config
CONFIG_FILEPATH="$WORK/configs/contrastive.jsonnet"
# Directory to save model, vocabulary and training logs
SERIALIZED_DIR="$OUTPUT/tmp"
​
# Load the required modules and activate the environment
module load python/3.7 cuda/10.1
source "$ENV/bin/activate"
cd $WORK
​
# Run the job
allennlp train $CONFIG_FILEPATH \
	--serialization-dir $SERIALIZED_DIR \
	--include-package t2t

Evaluation

To evaluate on SentEval, you will first need to install it. Then set SENTEVAL_DIR and SERIALIZED_DIR, the path to the serialized AllenNLP model you want to evaluate, in the following script.

A file, senteval_results.json will be saved to SERIALIZED_DIR. This JSON contains detailed scores from each task along with aggregate scores.

run_senteval_allennlp.sh

#!/bin/bash
# Requested resources
#SBATCH --mem=12G
#SBATCH --cpus-per-task=8
#SBATCH --gres=gpu:1
# Wall time and job details
#SBATCH --time=7:00:00
#SBATCH --job-name=senteval-allennlp
# Emails me when job starts, ends or fails
#SBATCH --mail-user=user@example.com
#SBATCH --mail-type=END,FAIL
# Use this command to run the same job interactively
# salloc --mem=12G --cpus-per-task=8 --gres=gpu:1 --time=3:00:00

PROJECT_NAME="t2t"
ENV="$HOME/$PROJECT_NAME"
OUTPUT="$SCRATCH/$PROJECT_NAME"
WORK="$SCRATCH/$PROJECT_NAME"

# Set path to AllenNLP archive and SentEval
SENTEVAL_DIR="SentEval"
SERIALIZED_DIR=""

# Load the required modules and activate the environment 
module load python/3.7 cuda/10.1
source $ENV/bin/activate
cd $WORK

# Run the job
python scripts/run_senteval.py allennlp $SENTEVAL_DIR $SERIALIZED_DIR "contrastive" \
	--output-filepath $SERIALIZED_DIR/senteval_results.json \
	--cuda-device 0 \
	--include-package t2t \
	--verbose
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