diff --git a/scan/__tests__/main.test.ts b/scan/__tests__/main.test.ts
index bbc70fd9..fcf29ce1 100644
--- a/scan/__tests__/main.test.ts
+++ b/scan/__tests__/main.test.ts
@@ -61,13 +61,18 @@ test('qodana scan command args', () => {
 
 test('test sarif with problems to output annotations', () => {
   const output = annotationsDefaultFixture()
-  const result = parseSarif('__tests__/data/some.sarif.json')
+  const defaultProjectDir = ''
+  const result = parseSarif('__tests__/data/some.sarif.json', defaultProjectDir)
   expect(result.annotations).toEqual(output)
 })
 
 test('test sarif with no problems to output annotations', () => {
   const output = outputEmptyFixture()
-  const result = parseSarif('__tests__/data/empty.sarif.json')
+  const defaultProjectDir = ''
+  const result = parseSarif(
+    '__tests__/data/empty.sarif.json',
+    defaultProjectDir
+  )
   expect(result.annotations).toEqual(output)
 })
 
diff --git a/scan/src/annotations.ts b/scan/src/annotations.ts
index 122b3acc..49a99794 100644
--- a/scan/src/annotations.ts
+++ b/scan/src/annotations.ts
@@ -121,11 +121,13 @@ export interface Annotation {
  * Converts a SARIF result to a GitHub Check Annotation.
  * @param result The SARIF log to convert.
  * @param rules The map of SARIF rule IDs to their descriptions.
+ * @param projectDir The path to the project.
  * @returns GitHub Check annotations are created for each result.
  */
 function parseResult(
   result: Result,
-  rules: Map<string, Rule>
+  rules: Map<string, Rule>,
+  projectDir: string
 ): Annotation | null {
   if (
     !result.locations ||
@@ -136,10 +138,14 @@ function parseResult(
   }
   const location = result.locations[0].physicalLocation
   const region = location.region
+  const pathPrefix =
+    projectDir === '' || projectDir.endsWith('/')
+      ? projectDir
+      : `${projectDir}/`
   return {
     message: result.message.markdown ?? result.message.text!,
     title: rules.get(result.ruleId!)?.shortDescription,
-    path: location.artifactLocation!.uri!,
+    path: pathPrefix + location.artifactLocation!.uri!,
     start_line: region?.startLine || 0,
     end_line: region?.endLine || region?.startLine || 1,
     start_column:
@@ -189,9 +195,10 @@ function parseRules(tool: Tool): Map<string, Rule> {
 /**
  * Converts a SARIF from the given path to a GitHub Check Output.
  * @param path The SARIF path to convert.
+ * @param projectDir The path to the project.
  * @returns GitHub Check Outputs with annotations are created for each result.
  */
-export function parseSarif(path: string): Output {
+export function parseSarif(path: string, projectDir: string): Output {
   const sarif: Log = JSON.parse(
     fs.readFileSync(path, {encoding: 'utf8'})
   ) as Log
@@ -205,7 +212,7 @@ export function parseSarif(path: string): Output {
     )} found by `
     annotations = run.results
       .filter(result => result.baselineState !== 'unchanged')
-      .map(result => parseResult(result, rules))
+      .map(result => parseResult(result, rules, projectDir))
       .filter((a): a is Annotation => a !== null && a !== undefined)
   }
   const name = run.tool.driver.fullName || 'Qodana'
diff --git a/scan/src/output.ts b/scan/src/output.ts
index c97dadcb..3d4ad56c 100644
--- a/scan/src/output.ts
+++ b/scan/src/output.ts
@@ -162,7 +162,10 @@ export async function publishOutput(
     return
   }
   try {
-    const problems = parseSarif(`${resultsDir}/${QODANA_SARIF_NAME}`)
+    const problems = parseSarif(
+      `${resultsDir}/${QODANA_SARIF_NAME}`,
+      projectDir
+    )
     const reportUrl = getReportURL(resultsDir)
     const coverageInfo = getCoverageStats(
       getCoverageFromSarif(`${resultsDir}/${QODANA_SHORT_SARIF_NAME}`)