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environment.yml
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name: cnova-env
channels:
- anaconda
- conda-forge
- pytorch
- defaults
dependencies:
- anndata=0.9.1=pyhd8ed1ab_0
- anyio=3.6.2=pyhd8ed1ab_0
- appnope=0.1.3=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py38hef030d1_3
- arpack=3.7.0=hefb7bc6_2
- asttokens=2.2.1=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.12.2=pyha770c72_0
- bleach=6.0.0=pyhd8ed1ab_0
- brotli=1.0.9=hb7f2c08_8
- brotli-bin=1.0.9=hb7f2c08_8
- brotlipy=0.7.0=py38hef030d1_1005
- bzip2=1.0.8=h0d85af4_4
- c-ares=1.18.1=h0d85af4_0
- ca-certificates=2022.4.26=hecd8cb5_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- certifi=2022.6.15=py38hecd8cb5_0
- cffi=1.15.1=py38hb368cf1_3
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.1.3=pyhd8ed1ab_0
- contourpy=1.0.7=py38h98b9b1b_0
- cryptography=40.0.2=py38h4257468_0
- cycler=0.11.0=pyhd8ed1ab_0
- debugpy=1.6.7=py38h4cd09af_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- filelock=3.11.0=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- fonttools=4.39.3=py38hef030d1_0
- freetype=2.12.1=h3f81eb7_1
- gettext=0.21.1=h8a4c099_0
- glib=2.74.1=hbc0c0cd_1
- glib-tools=2.74.1=hbc0c0cd_1
- glpk=5.0=h3cb5acd_0
- gmp=6.2.1=h2e338ed_0
- gmpy2=2.1.2=py38h919de47_1
- gst-plugins-base=1.22.0=h37e1711_2
- gstreamer=1.22.0=h1d18e73_2
- h5py=3.8.0=nompi_py38hd2287a7_101
- hdf5=1.14.0=nompi_hbf0aa07_103
- icu=72.1=h7336db1_0
- idna=3.4=pyhd8ed1ab_0
- igraph=0.10.3=h020c493_0
- importlib-metadata=6.4.1=pyha770c72_0
- importlib-resources=5.12.0=pyhd8ed1ab_0
- importlib_metadata=6.4.1=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- ipykernel=6.22.0=pyh736e0ef_0
- ipython=8.12.0=pyhd1c38e8_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=8.0.6=pyhd8ed1ab_0
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- joblib=1.2.0=pyhd8ed1ab_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter=1.0.0=py38h50d1736_8
- jupyter_client=8.2.0=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.3.0=py38h50d1736_0
- jupyter_events=0.6.3=pyhd8ed1ab_0
- jupyter_server=2.5.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.7=pyhd8ed1ab_0
- kiwisolver=1.4.4=py38h98b9b1b_1
- krb5=1.20.1=h049b76e_0
- lcms2=2.15=h2dcdeff_1
- leidenalg=0.9.1=py38h4cd09af_0
- lerc=4.0.0=hb486fe8_0
- libaec=1.0.6=hf0c8a7f_1
- libblas=3.9.0=16_osx64_openblas
- libbrotlicommon=1.0.9=hb7f2c08_8
- libbrotlidec=1.0.9=hb7f2c08_8
- libbrotlienc=1.0.9=hb7f2c08_8
- libcblas=3.9.0=16_osx64_openblas
- libclang=14.0.6=default_hd95374b_1
- libclang13=14.0.6=default_habbcc1a_1
- libcurl=8.0.1=h1fead75_0
- libcxx=16.0.1=h71dddab_0
- libdeflate=1.18=hac1461d_0
- libedit=3.1.20191231=h0678c8f_2
- libev=4.33=haf1e3a3_1
- libffi=3.4.2=h0d85af4_5
- libgfortran=5.0.0=11_3_0_h97931a8_31
- libgfortran5=12.2.0=he409387_31
- libglib=2.74.1=h4c723e1_1
- libiconv=1.17=hac89ed1_0
- libjpeg-turbo=2.1.5.1=hb7f2c08_0
- liblapack=3.9.0=16_osx64_openblas
- libllvm11=11.1.0=h8fb7429_5
- libllvm14=14.0.6=h5b596cc_1
- libnghttp2=1.52.0=he2ab024_0
- libogg=1.3.4=h35c211d_1
- libopenblas=0.3.21=openmp_h429af6e_3
- libopus=1.3.1=hc929b4f_1
- libpng=1.6.39=ha978bb4_0
- libpq=15.2=h3640bf0_0
- libprotobuf=3.21.12=hbc0c0cd_0
- libsodium=1.0.18=hbcb3906_1
- libsqlite=3.40.0=ha978bb4_0
- libssh2=1.10.0=h47af595_3
- libtiff=4.5.0=hedf67fa_6
- libvorbis=1.3.7=h046ec9c_0
- libwebp-base=1.3.0=hb7f2c08_0
- libxcb=1.13=h0d85af4_1004
- libxml2=2.10.4=h554bb67_0
- libzlib=1.2.13=hfd90126_4
- llvm-openmp=16.0.1=h61d9ccf_0
- llvmlite=0.39.1=py38hc86dbf9_1
- markupsafe=2.1.2=py38hef030d1_0
- matplotlib=3.7.1=py38h50d1736_0
- matplotlib-base=3.7.1=py38hcb346ec_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- metis=5.1.0=h2e338ed_1006
- mistune=2.0.5=pyhd8ed1ab_0
- mkl=2022.2.1=h44ed08c_16952
- mpc=1.3.1=h81bd1dd_0
- mpfr=4.2.0=h4f9bd69_0
- mpmath=1.3.0=pyhd8ed1ab_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.32=hc4b2c72_1
- mysql-libs=8.0.32=h8658499_1
- natsort=8.3.1=pyhd8ed1ab_0
- nbclassic=0.5.5=pyhb4ecaf3_1
- nbclient=0.7.3=pyhd8ed1ab_0
- nbconvert=7.3.1=pyhd8ed1ab_0
- nbconvert-core=7.3.1=pyhd8ed1ab_0
- nbconvert-pandoc=7.3.1=pyhd8ed1ab_0
- nbformat=5.8.0=pyhd8ed1ab_0
- ncurses=6.3=h96cf925_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- networkx=3.1=pyhd8ed1ab_0
- notebook=6.5.4=pyha770c72_0
- notebook-shim=0.2.2=pyhd8ed1ab_0
- nspr=4.35=hea0b92c_0
- nss=3.89=h78b00b3_0
- numba=0.56.4=py38hfdfe451_1
- numpy=1.23.5=py38hc2f29e8_0
- openjpeg=2.5.0=h13ac156_2
- openssl=3.1.0=hfd90126_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.0=py38hec72209_0
- pandoc=2.19.2=h694c41f_2
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=h1c4e4bc_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.5.0=py38h3c5639a_0
- pip=23.1=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.2.0=pyhd8ed1ab_0
- ply=3.11=py_1
- pooch=1.7.0=pyha770c72_3
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- psutil=5.9.4=py38hef030d1_0
- pthread-stubs=0.4=hc929b4f_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.15.0=pyhd8ed1ab_0
- pynndescent=0.5.8=pyh1a96a4e_0
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py38h872f513_3
- pyqt5-sip=12.11.0=py38haf9be31_3
- pyrsistent=0.19.3=py38hef030d1_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.8.16=hf9b03c3_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-igraph=0.10.4=py38heed66c0_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.8=3_cp38
- pytorch=2.0.0=cpu_py38h7c2c2ba_0
- pytz=2023.3=pyhd8ed1ab_0
- pyyaml=6.0=py38hef030d1_5
- pyzmq=25.0.2=py38h0b711fd_0
- qt-main=5.15.8=h0afe88e_9
- qtconsole=5.4.2=pyhd8ed1ab_0
- qtconsole-base=5.4.2=pyha770c72_0
- qtpy=2.3.1=pyhd8ed1ab_0
- readline=8.2=h9e318b2_1
- requests=2.28.2=pyhd8ed1ab_1
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- scanpy=1.9.3=pyhd8ed1ab_0
- scikit-learn=1.2.2=py38h1081964_1
- scipy=1.10.1=py38hfb8b963_0
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- session-info=1.0.0=pyhd8ed1ab_0
- sip=6.7.8=py38h4cd09af_0
- six=1.16.0=pyh6c4a22f_0
- sleef=3.5.1=h6db0672_2
- sniffio=1.3.0=pyhd8ed1ab_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.2=py38hca72f7f_0
- stdlib-list=0.8.0=pyhd8ed1ab_0
- suitesparse=5.10.1=h7aff33d_1
- sympy=1.11.1=pypyh9d50eac_103
- tbb=2021.9.0=hb8565cd_0
- terminado=0.17.1=pyhd1c38e8_0
- texttable=1.6.7=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h5dbffcc_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.2=py38hef030d1_1
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=hd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- umap-learn=0.5.3=py38h50d1736_0
- unicodedata2=15.0.0=py38hef030d1_0
- urllib3=1.26.15=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- widgetsnbextension=4.0.7=pyhd8ed1ab_0
- xorg-libxau=1.0.9=h35c211d_0
- xorg-libxdmcp=1.1.3=h35c211d_0
- xz=5.2.6=h775f41a_0
- yaml=0.2.5=h0d85af4_2
- zeromq=4.3.4=he49afe7_1
- zipp=3.15.0=pyhd8ed1ab_0
- zstd=1.5.2=hbc0c0cd_6
- pip:
- aiofiles==22.1.0
- aiosqlite==0.18.0
- arrow==1.2.3
- babel==2.12.1
- build==0.10.0
- cellanova==0.1.0
- fqdn==1.5.1
- harmonypy==0.0.9
- isoduration==20.11.0
- json5==0.9.11
- jsonpointer==2.3
- jupyter-server-fileid==0.9.0
- jupyter-server-ydoc==0.8.0
- jupyter-ydoc==0.2.4
- jupyterlab==3.6.3
- jupyterlab-server==2.22.1
- pyproject-hooks==1.0.0
- setuptools==67.7.1
- uri-template==1.2.0
- webcolors==1.13
- y-py==0.5.9
- ypy-websocket==0.8.2
prefix: /Users/zzj/opt/anaconda3/envs/cnova-env