Update 'vagrant' to work with new submodule structure after #257

[ruebot]

See: #258

I have the following commented out because it is looking for the jars on maven central. Haven't figured out why yet. We can leave it like that, and merge if everything else is satisfactory, or I can try harder to sort out.

  #config.vm.provision :shell, :path => "./scripts/islandora-karaf-components.sh", :args => home_dir
  #config.vm.provision :shell, :path => "./scripts/config.sh", :args => home_dir

Crayfish looks to be working fine.

[nruest@gorila:install] (git)-[issue-258]-$ curl -i "http://localhost:8282/islandora/resource"
vagrHTTP/1.1 200 OK
Date: Wed, 25 May 2016 02:37:45 GMT
Server: Apache/2.4.7 (Ubuntu)
Link: <http://www.w3.org/ns/ldp#Resource>;rel="type"
Link: <http://www.w3.org/ns/ldp#Container>;rel="type"
Link: <http://www.w3.org/ns/ldp#BasicContainer>;rel="type"
Accept-Patch: application/sparql-update
Accept-Post: text/turtle,text/rdf+n3,text/n3,application/rdf+xml,application/n-triples,multipart/form-data,application/sparql-update
Allow: MOVE,COPY,DELETE,POST,HEAD,GET,PUT,PATCH,OPTIONS
Preference-Applied: return=representation
Vary: Prefer,Accept,Range,Accept-Encoding,Accept-Language
Content-Length: 1749
Cache-Control: no-cache
Content-Type: text/turtle; charset=UTF-8

@prefix premis: <http://www.loc.gov/premis/rdf/v1#> .
@prefix image: <http://www.modeshape.org/images/1.0> .
@prefix sv: <http://www.jcp.org/jcr/sv/1.0> .
@prefix test: <info:fedora/test/> .
@prefix nt: <http://www.jcp.org/jcr/nt/1.0> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsi: <http://www.w3.org/2001/XMLSchema-instance> .
@prefix mode: <http://www.modeshape.org/1.0> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix fedora: <http://fedora.info/definitions/v4/repository#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix jcr: <http://www.jcp.org/jcr/1.0> .
@prefix ebucore: <http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#> .
@prefix ldp: <http://www.w3.org/ns/ldp#> .
@prefix xs: <http://www.w3.org/2001/XMLSchema> .
@prefix fedoraconfig: <http://fedora.info/definitions/v4/config#> .
@prefix mix: <http://www.jcp.org/jcr/mix/1.0> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .


<http://localhost:8080/fcrepo/rest/> a ldp:RDFSource , ldp:Container , ldp:BasicContainer ;
    fedora:writable "true"^^<http://www.w3.org/2001/XMLSchema#boolean> ;
    a fedora:RepositoryRoot , fedora:Resource , fedora:Container ;
    fedora:numberOfChildren "0"^^<http://www.w3.org/2001/XMLSchema#long> .

<http://localhost:8080/fcrepo/rest/fcr:export?format=jcr/xml> dc:format <http://fedora.info/definitions/v4/repository#jcr/xml> .

<http://fedora.info/definitions/v4/repository#jcr/xml> rdfs:label "jcr/xml"^^<http://www.w3.org/2001/XMLSchema#string> .

<http://localhost:8080/fcrepo/rest/> fedora:exportsAs <http://localhost:8080/fcrepo/rest/fcr:export?format=jcr/xml> ;
    fedora:hasTransactionProvider <http://localhost:8080/fcrepo/rest/fcr:tx> .

[ruebot]

@whikloj @DiegoPino @br2490 @bryjbrown ready for review when y'all have time.

[br2490]

Early during provision, PPA Error:

==> default: Cannot add PPA: 'ppa:ondrej/php'.
==> default: Please check that the PPA name or format is correct.

(sorry for poor GISTing)

https://gist.github.com/br2490/ed8176a112183a7baed0bb4c15debc68

[DiegoPino]

@br2490 @ruebot not sure, but ppa failure maybe related to this:
http://askubuntu.com/questions/452595/cannot-add-ppa-behind-proxy-ubuntu-14-04
But i suspect it's more related to this here:
oerdnj/deb.sury.org#56

@br2490 can you post a bit more of the output you are getting?
Or what happens if you run https://github.com/Islandora-CLAW/CLAW/blob/9056d2775f5ebce5eea1095765dbd817f7099e02/install/scripts/bootstrap.sh#L21 directly?

Also on your gist, please check that Karaf and all the fcrepo-camel stuff are running correctly (/opt/karaf/bin/client and check installed features and the logs), and that your settings YAML file is pointing to the correct place fedora and blaze graph paths, since 50x type of errors mean a service is down(or not found) (could be a mix of both).

[ruebot]

Weird, the ppa is working on my end:

vagrant@islandora-deux:~$ php -version
PHP 5.6.21-9+donate.sury.org~trusty+1 (cli) 
Copyright (c) 1997-2016 The PHP Group
Zend Engine v2.6.0, Copyright (c) 1998-2016 Zend Technologies
    with Zend OPcache v7.0.6-dev, Copyright (c) 1999-2016, by Zend Technologies

[whikloj]

This the 7.x-2.x camel image service, we don't use this anymore and so it probably shouldn't be here at all.

[ruebot]

Delete issues with PDX dependant on: #266