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Anima scripts v2.2
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@ocommowi ocommowi released this 06 Mar 13:40
· 112 commits to master since this release
v2.2
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Minor update release of Anima scripts, a set of scripts that use Anima to perform complex preprocessing and core processing tasks on medical images. This repository is multi-platform for most scripts (as long as python is available for your system), except for atlasing scripts that require an OAR scheduler. If you are using Anima scripts for your research, please take the time to:

  • Cite the relevant papers referenced in the other pages of this documentation wiki or in Anima
  • Add a sentence in your acknowledgments section or in the methods part of your paper referencing the RRID of Anima scripts: RRID:SCR_017072, and the one of Anima : RRID:SCR_017017.

This new release contains the following updates:

  • Requires Anima v3.4 or higher
  • New multi atlas segmentation script on an OAR cluster
  • New T2 relaxometry processing script for mono T2 and myelin water fraction estimation
  • Other minor bug corrections

More details on the scripts are available on the documentation wiki.

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