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Pisces.sln
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Pisces.sln
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Microsoft Visual Studio Solution File, Format Version 12.00
# Visual Studio 15
VisualStudioVersion = 15.0.27004.2010
MinimumVisualStudioVersion = 10.0.40219.1
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "src", "src", "{D7AD5074-B32E-49F4-84C7-EF75613888D1}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Solution Items", "Solution Items", "{CB0D2CAB-EC9E-4712-B0BB-7E44FCB3AF7B}"
ProjectSection(SolutionItems) = preProject
global.json = global.json
EndProjectSection
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "lib", "lib", "{1949A652-0E6C-4DB0-90CC-50A8093E731B}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "exe", "exe", "{59861960-F020-4226-A1F6-E3561C9B2432}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VennVcf", "src\exe\VennVcf\VennVcf.csproj", "{E65D5A1B-0912-4CE8-B713-BDF2FB545AD6}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Calculators", "src\lib\Pisces.Calculators\Pisces.Calculators.csproj", "{77FAA967-BD88-45DC-9EB3-B13A86314BAF}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Processing", "src\lib\Pisces.Processing\Pisces.Processing.csproj", "{D7CA4E74-0FA2-4ED4-AA5D-2A0A9CF4DCA3}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VariantQualityRecalibration", "src\exe\VariantQualityRecalibration\VariantQualityRecalibration.csproj", "{A5A7FEB7-2349-4735-9A07-431A83E80CEA}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "StitchingLogic", "src\lib\StitchingLogic\StitchingLogic.csproj", "{D47E59F6-1943-485C-AA04-A8D40074CCB0}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.Domain", "src\lib\Alignment.Domain\Alignment.Domain.csproj", "{A0B60475-9F31-4E66-92EC-191043552965}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.IO", "src\lib\Alignment.IO\Alignment.IO.csproj", "{EE4D5560-0EB4-492E-BE79-3C62A672472D}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.Logic", "src\lib\Alignment.Logic\Alignment.Logic.csproj", "{07358134-EE86-4289-8FB1-8042E7C8A2CE}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Common.IO", "src\lib\Common.IO\Common.IO.csproj", "{62C879E2-11B2-4A1F-9608-B71C6C32A936}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces", "src\exe\Pisces\Pisces.csproj", "{D81B1C1A-B4C4-4C75-A21C-D0B303385EB3}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Scylla", "src\exe\Scylla\Scylla.csproj", "{5B967EEE-8A77-4F77-AF1D-D586CC5FF669}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VariantPhasing", "src\lib\VariantPhasing\VariantPhasing.csproj", "{FFB86123-5AD2-4A70-8C42-84ECF40DAA83}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.IO", "src\lib\Pisces.IO\Pisces.IO.csproj", "{725C5B0E-C497-4A6C-9D4A-F34AE30DA31F}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "test", "test", "{ECC64930-D5F1-4F0D-878B-0936085BBECA}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "testdata", "testdata", "{A2ADDDB7-C0B4-4E4D-B30A-6491FE35B0EE}"
ProjectSection(SolutionItems) = preProject
testdata\example_S1.bam = testdata\example_S1.bam
testdata\example_S1.bam.bai = testdata\example_S1.bam.bai
testdata\Intervals_1.picard = testdata\Intervals_1.picard
EndProjectSection
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "TestUtilities", "src\test\TestUtilities\TestUtilities.csproj", "{E93479EA-39C4-4AEE-9109-62EFBFAA6149}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Common.IO.Tests", "src\test\Common.IO.Tests\Common.IO.Tests.csproj", "{E82A8647-DA50-4B5F-B93D-F36322F46D3A}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.Domain.Tests", "src\test\Alignment.Domain.Tests\Alignment.Domain.Tests.csproj", "{9DAE752F-A644-4858-B8FA-DC365FE8DF4D}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.IO.Tests", "src\test\Alignment.IO.Tests\Alignment.IO.Tests.csproj", "{C6431B50-817F-4D5D-AE10-27BA5B3C672D}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Alignment.Logic.Tests", "src\test\Alignment.Logic.Tests\Alignment.Logic.Tests.csproj", "{C69BDC79-DD4B-4442-8B98-5840107DFEE3}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "SharedData", "SharedData", "{AB24E24D-C0D0-49B2-9BBE-5D0E68AA68D6}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Bams", "Bams", "{39EDE474-2D40-4F42-9ED6-F87B3DACF555}"
ProjectSection(SolutionItems) = preProject
src\test\SharedData\Bams\Bcereus_S4.bam = src\test\SharedData\Bams\Bcereus_S4.bam
src\test\SharedData\Bams\Bcereus_S4.bam.bai = src\test\SharedData\Bams\Bcereus_S4.bam.bai
src\test\SharedData\Bams\Chr17Chr19.bam = src\test\SharedData\Bams\Chr17Chr19.bam
src\test\SharedData\Bams\Chr17Chr19.bam.bai = src\test\SharedData\Bams\Chr17Chr19.bam.bai
src\test\SharedData\Bams\PhiX_S3.bam = src\test\SharedData\Bams\PhiX_S3.bam
src\test\SharedData\Bams\PhiX_S3.bam.bai = src\test\SharedData\Bams\PhiX_S3.bam.bai
EndProjectSection
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Genomes", "Genomes", "{292108F8-6259-4419-B6C1-DA7D669E3327}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "StitcherTestData", "StitcherTestData", "{D5E832EF-0D04-4FBD-B6C3-866CCA758963}"
ProjectSection(SolutionItems) = preProject
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_Deletions_Deletion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_Deletions_Deletion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_GapSituations_Gaps Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_GapSituations_Gaps Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_Insertions_Insertion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_Insertions_Insertion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeDeletions_SCProbeDeletion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeDeletions_SCProbeDeletion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeInsertions_SCProbeInsertion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeInsertions_SCProbeInsertion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeSnpsAndMnvs_SCProbe MNVs Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SCProbeSnpsAndMnvs_SCProbe MNVs Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SnpsAndMnvs_SNPs and MNVs Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SnpsAndMnvs_SNPs and MNVs Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedDeletions_SoftclippedDeletion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedDeletions_SoftclippedDeletion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedInsertions_SoftClippedInsertion Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedInsertions_SoftClippedInsertion Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedSnpsAndMnvs_Softclipped MNVs Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_SoftClippedSnpsAndMnvs_Softclipped MNVs Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_UnstitchableDeletions_UnstitchableDeletions Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_UnstitchableDeletions_UnstitchableDeletions Inputs.csv
src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_UnstitchableInsertions_UnstitchableIns Inputs.csv = src\test\SharedData\StitcherTestData\PiscesUnitTestScenarios_UnstitchableInsertions_UnstitchableIns Inputs.csv
EndProjectSection
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Calculators.Tests", "src\test\Pisces.Calculators.Tests\Pisces.Calculators.Tests.csproj", "{561EA6BA-0DF7-4D38-B88B-ADD55755A906}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Domain.Tests", "src\test\Pisces.Domain.Tests\Pisces.Domain.Tests.csproj", "{0F382C74-2FB1-4CA3-A934-564BE04336C2}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.IO.Tests", "src\test\Pisces.IO.Tests\Pisces.IO.Tests.csproj", "{8E0B51D8-3668-4799-8B4D-24F14B27D405}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Processing.Tests", "src\test\Pisces.Processing.Tests\Pisces.Processing.Tests.csproj", "{C1C1AB19-14AF-4B5D-8914-EDB59A7EB949}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Pisces.Tests", "src\test\Pisces.Tests\Pisces.Tests.csproj", "{DFDF5704-005D-4F79-9383-94A35740292C}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "Scylla.Tests", "src\test\Scylla.Tests\Scylla.Tests.csproj", "{9A20701E-3EAB-44ED-ACE7-90A6EA6BD7DD}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "StitchingLogic.Tests", "src\test\StitchingLogic.Tests\StitchingLogic.Tests.csproj", "{64A85232-55A1-465C-95BB-25B9D05BEDA4}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VariantPhasing.Tests", "src\test\VariantPhasing.Tests\VariantPhasing.Tests.csproj", "{7A5CA05B-8710-42F8-8F99-A33B0CD0E2F5}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VariantQualityRecalibration.Tests", "src\test\VariantQualityRecalibration.Tests\VariantQualityRecalibration.Tests.csproj", "{7A70BD6F-02B1-48B1-AD96-AC10291E309E}"
EndProject
Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "VennVcf.Tests", "src\test\VennVcf.Tests\VennVcf.Tests.csproj", "{5632A681-CC35-43E6-9CEC-E3F18EFD47C7}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "Bacillus_cereus", "Bacillus_cereus", "{50E6F59F-96AC-459E-A6D7-B087EAAD4247}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "chr17chr19", "chr17chr19", "{1153AF31-A7FA-470A-B659-4FF181F248A4}"
ProjectSection(SolutionItems) = preProject
src\test\SharedData\Genomes\chr17chr19\chr17chr19.fa = src\test\SharedData\Genomes\chr17chr19\chr17chr19.fa
src\test\SharedData\Genomes\chr17chr19\chr17chr19.fa.fai = src\test\SharedData\Genomes\chr17chr19\chr17chr19.fa.fai
src\test\SharedData\Genomes\chr17chr19\GenomeSize.xml = src\test\SharedData\Genomes\chr17chr19\GenomeSize.xml
EndProjectSection
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "chr19", "chr19", "{02D5A0B4-FFED-449F-83EC-A85F10FD9BE7}"
ProjectSection(SolutionItems) = preProject
src\test\SharedData\Genomes\chr19\chr19.dict = src\test\SharedData\Genomes\chr19\chr19.dict
src\test\SharedData\Genomes\chr19\chr19.fa = src\test\SharedData\Genomes\chr19\chr19.fa
src\test\SharedData\Genomes\chr19\chr19.fa.bwt = src\test\SharedData\Genomes\chr19\chr19.fa.bwt
src\test\SharedData\Genomes\chr19\chr19.fa.fai = src\test\SharedData\Genomes\chr19\chr19.fa.fai
src\test\SharedData\Genomes\chr19\GenomeSize.xml = src\test\SharedData\Genomes\chr19\GenomeSize.xml
EndProjectSection
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "fourChrs", "fourChrs", "{50489018-3E86-4AE1-8DE2-34369BF93C43}"
ProjectSection(SolutionItems) = preProject
src\test\SharedData\Genomes\fourChrs\chr7chr19.fa = src\test\SharedData\Genomes\fourChrs\chr7chr19.fa
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