Izhikevic.rules

rule compile_model:
    input:
        '{folder}/{{model}}.cpp'.format(folder=IZHI_CODE_DIR)
    output:
        '{folder}/{{model}}'.format(folder=IZHI_EXEC_DIR)
    shell:
        'g++ -o {output} {input}'


rule original_bitwise_reproduction:
    input:
        '{folder}/poly_spnet_bitwise_reproduction'.format(folder=IZHI_EXEC_DIR)
    output:
        program='{folder}/{{rep}}/poly_spnet_bitwise_reproduction'.format(folder=IZHI_EXEC_DIR),
        mem='{folder}/bitwise_reproduction/{{rep}}/vu.dat'.format(folder=IZHI_DATA_DIR),
        stim='{folder}/bitwise_reproduction/{{rep}}/stim.dat'.format(folder=IZHI_DATA_DIR),
        init='{folder}/bitwise_reproduction/{{rep}}/vuinit.dat'.format(folder=IZHI_DATA_DIR),
        alldat='{folder}/bitwise_reproduction/{{rep}}/all.dat'.format(folder=IZHI_DATA_DIR),
        spk='{folder}/bitwise_reproduction/{{rep}}/spikes.dat'.format(folder=IZHI_DATA_DIR)
    log: os.path.join(CUR_DIR,'logs/run_poly_spnet_bitwise_{rep}.log')
    shell:
        """
        cd {folder}
        cp poly_spnet_bitwise_reproduction {{wildcards.rep}}
        cd {{wildcards.rep}}
        ./poly_spnet_bitwise_reproduction {{wildcards.rep}} &>{{log}}
        mv *.dat {mv_folder}/bitwise_reproduction/{{wildcards.rep}}
        """.format(folder=IZHI_EXEC_DIR,mv_folder=os.path.join(CUR_DIR,IZHI_DATA_DIR))


rule compile_reformat:
    input:
        expand('{folder}/reformat.cpp',folder=ANA_DIR)
    output:
        expand('{folder}/reformat',folder=ANA_DIR)
    shell:
        'g++ -o {output} {input} -ljsoncpp'


rule run_poly_spnet:
    input:
        '{folder}/poly_spnet'.format(folder=IZHI_EXEC_DIR),
#        rules.original_bitwise_reproduction.output
    output:
        spikes=expand('{folder}/spikes.dat',folder=IZHI_DATA_DIR),
        weights=expand('{folder}/all.dat',folder=IZHI_DATA_DIR),
        groups=expand('{folder}/polyall.dat',folder=IZHI_DATA_DIR)
    log: os.path.join(CUR_DIR,'logs/run_poly_spnet.log')

    shell:
        """
        cd {folder}
        ./poly_spnet &>{{log}}
        mv *.dat {mv_folder}
        """.format(folder=IZHI_EXEC_DIR,mv_folder=os.path.join(CUR_DIR,IZHI_DATA_DIR))


rule reformat_izhi:
    input:
        all_file='{folder}/bitwise_reproduction/{{rep}}/all.dat'.format(folder=IZHI_DATA_DIR),
        programm=rules.compile_reformat.output
    output:
        expand('{folder}/bitwise_reproduction/{{rep}}/connectivity.json',folder=IZHI_DATA_DIR),
    shell:
        '{folder}/reformat {{input.all_file}} {{output}}'.format(folder=ANA_DIR)