diff --git a/dlg-graphs-final/280624_pipeline_mosaic.graph b/dlg-graphs-final/280624_pipeline_mosaic.graph index 203c0076..4aaa071e 100644 --- a/dlg-graphs-final/280624_pipeline_mosaic.graph +++ b/dlg-graphs-final/280624_pipeline_mosaic.graph @@ -361,7 +361,7 @@ "color": "#0059a5", "drawOrderHint": 0, "key": -17, - "name": "linmos", + "name": "linmos (mosaic)", "description": "This docker app runs the Yandasoft Imager. It uses an askapsoft compliant configuration file on input, which defines all the required parameters.", "x": 908.0710618474844, "y": 865.7279052647268, @@ -558,7 +558,7 @@ "color": "#2c2c2c", "drawOrderHint": 0, "key": -18, - "name": "linmos_image", + "name": "mosaic_image", "description": "A standard file on a filesystem mounted to the deployment machine", "x": 1136.7082501516995, "y": 866.8486918789478, @@ -709,11 +709,11 @@ "isGroup": false, "color": "#2c2c2c", "drawOrderHint": 0, - "key": -5, - "name": "linmosParset", + "key": -1, + "name": "mosaicParset", "description": "A set of parameters, which can be set and modified in EAGLE and thus is part of the graph. Multiple serialisation formats are available.", - "x": 325.0793258622977, - "y": 860.8394199114219, + "x": 323.8467473765099, + "y": 859.6068414256333, "radius": 25, "collapsed": false, "subject": null, @@ -734,7 +734,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "67b49728-7fc2-4ca5-b7f5-db4511e95ccd", + "id": "8d3c15e8-6b55-49ed-9b17-6fbe74ee17e4", "parameterType": "ConstraintParameter", "usage": "NoPort" }, @@ -749,7 +749,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "aaa6a77e-36a5-40ad-aefc-486638278d03", + "id": "79fa3751-d835-4f36-ad71-9c0b2b084d54", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -771,7 +771,7 @@ ], "positional": false, "keyAttribute": false, - "id": "1424c35f-80f1-4ae6-92bb-7674d5332e09", + "id": "446dc98f-51f9-4190-92bf-f47ccdd40717", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -786,7 +786,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "cc8c4a07-f34b-4ac7-8376-aaccefb065a0", + "id": "ac113366-2b19-4c1d-868d-94e7d7a09da2", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -801,7 +801,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "73a880c5-1b44-4031-b48c-3e6f5006330d", + "id": "1fc94beb-965e-4bd8-b2e9-9b18cc51fcd8", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -816,7 +816,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "3090fde0-01a2-4ed6-b649-23b49ba5f13e", + "id": "f73a0237-f60f-4050-b6ec-d6eb42ad6981", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -831,7 +831,7 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "21fb0fb8-ba02-4f1f-a4f2-bf96f1cf2e4e", + "id": "2c54c429-b848-40fc-b55b-242b03aa9ab9", "parameterType": "ComponentParameter", "usage": "NoPort" }, @@ -846,13 +846,13 @@ "options": [], "positional": false, "keyAttribute": false, - "id": "fb6587b3-fe1f-4cdd-84cc-3fd62e2fad1b", + "id": "5da0030b-a297-4720-a7c8-dad0a27af591", "parameterType": "ApplicationArgument", "usage": "OutputPort" }, { "name": "linmos.names", - "value": "[image.restored.HIPASSJ1318-21_A_beam10_10arc_split_25.contsub]", + "value": "[]", "defaultValue": "", "description": "Names of the input images. If these images start with \u201cimage\u201d and have associated sensitivity images, the latter are integrated into a sensitivity image for the mosaic.", "readonly": false, @@ -860,14 +860,14 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "bd619ba2-1483-41e6-a56d-81e86bc244d9", + "keyAttribute": true, + "id": "6b9386d2-5661-4c56-948a-a5542f52b98c", "parameterType": "ApplicationArgument", "usage": "NoPort" }, { "name": "linmos.weights", - "value": "[weights.HIPASSJ1318-21_A_beam10_10arc_split_25]", + "value": "[]", "defaultValue": "", "description": "Optional parameter (required if using weight images). Names of input images containing pixel weights. There must be one weight image for each image, and the size must match. Alternatively, a weightslog file can be specified for each input image. Use the useweightslog parameter and/or .txt extension to indicate weightslog inputs. If weights are required, but not specified, linmos will try to read them from the image headers. Ignored if weighttype=FromPrimaryBeamModel or if findmosaics=true.", "readonly": false, @@ -875,14 +875,14 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "09353c17-4ca5-415f-8c5e-da6d1d58209d", + "keyAttribute": true, + "id": "78640e69-647a-4a12-8f86-1da8b71edb51", "parameterType": "ApplicationArgument", "usage": "NoPort" }, { "name": "linmos.outname", - "value": "image.restored.HIPASSJ1318-21_A_beam10_10arc_split_25.contsub_holo ", + "value": "image.HIPASSJ1318-21_A_10arc_split.final_mosaic", "defaultValue": "", "description": "Name of the output image. Ignored if findmosaics=true.", "readonly": false, @@ -890,8 +890,8 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "e892d836-ae07-4a15-8a94-a38c6425cecc", + "keyAttribute": true, + "id": "58978d08-7884-4e72-a3b3-829f4031438b", "parameterType": "ApplicationArgument", "usage": "NoPort" }, @@ -905,29 +905,14 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "ab4b3126-7dd6-43b7-8087-9e1ab10d9fea", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.feeds.centre", - "value": "[13h18m54.80,-21.02.21] ", - "defaultValue": "", - "description": "Optional parameter (it or feeds.centreref required when specifying beam offsets). Two-element vector containing the right ascension and declination that all of the offsets are relative to.", - "readonly": false, - "type": "Object.Array", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "1fa3722a-f703-48c8-b2cd-452e99d01a34", + "keyAttribute": true, + "id": "c4b08010-a4d7-4ac8-9f6d-9e655bfe0e8f", "parameterType": "ApplicationArgument", "usage": "NoPort" }, { "name": "linmos.weighttype", - "value": "Combined", + "value": "FromWeightImages", "defaultValue": "", "description": "How to determine the pixel weights. Options: FromWeightImages: from weight images. Parameter weights must be present and there must be a one-to-one correspondence with the input images.FromPrimaryBeamModel: using a primary-beam model. If beam centres are not specified (see below), the reference pixel of each input image is used.Combined: uses both the weight images and the PB model to form the pixel weight", "readonly": false, @@ -935,38 +920,8 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "e3cbdf9c-e3d8-47b7-a45b-e4fda05b13dd", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.feeds.spacing", - "value": "1deg", - "defaultValue": "", - "description": "Optional parameter (required when specifying beam offsets in the main linmos parset). Beam/feed spacing when giving offsets in the main linmos parset. If feeds.offsetsfile is given, this parameter will be ignored.", - "readonly": false, - "type": "String", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "9ca8ac77-8552-41f5-a7f5-1eda750f363d", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.psfref", - "value": 0, - "defaultValue": "0", - "description": "Which of the input images to extract restoring-beam information from. The default behaviour is to use the first image specified (indices start at 0).", - "readonly": false, - "type": "Integer", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "bfca4361-cd60-4fed-924f-ceffa5146f49", + "keyAttribute": true, + "id": "f8c1431f-1071-4046-b83b-068cc03b84c6", "parameterType": "ApplicationArgument", "usage": "NoPort" }, @@ -980,53 +935,8 @@ "precious": false, "options": [], "positional": false, - "keyAttribute": false, - "id": "f8b4b52d-6c57-4598-8f81-8be14ac07833", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.primarybeam", - "value": "ASKAP_PB", - "defaultValue": "GaussianPB", - "description": "Optional parameter that allows the user to select which primary beam will be used in weighting. The parameters of which can also be altered if required. Also supported are ASKAP_PB, MWA_PB and SKA_PB.", - "readonly": false, - "type": "String", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "36cd762b-f499-4db7-850e-50cbb7453742", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.primarybeam.ASKAP_PB.image", - "value": "akpb.iquv.square_6x6.54.1295MHz.SB32736.cube.fits", - "defaultValue": "", - "description": "FITS image file with 4/5 axes (see above), note that you need to specify the full filename (including .fits) here.", - "readonly": false, - "type": "String", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "fa80b353-be85-4758-8416-dfe981c529b4", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.removeleakage", - "value": false, - "defaultValue": "false", - "description": "Remove off-axis leakage from Stokes Q, U and V images using a model of the Stokes-I dependent leakage", - "readonly": false, - "type": "Boolean", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "68fcbc7d-c5e9-4bea-a7f0-6fe70c038af3", + "keyAttribute": true, + "id": "2163885f-f610-48d6-b55b-15b2de59f189", "parameterType": "ApplicationArgument", "usage": "NoPort" }, @@ -1044,13 +954,13 @@ ], "positional": false, "keyAttribute": false, - "id": "296c3993-abac-4db1-9b02-5a384b6a479b", + "id": "700ea85b-c96c-49ed-893a-d3bd70305431", "parameterType": "ApplicationArgument", "usage": "NoPort" }, { "name": "linmos.weightstate", - "value": "Inherent", + "value": "Corrected", "defaultValue": "Corrected", "description": "The weighting state of the input images. Options: Corrected: Direction-dependent beams/weights have been divided out of input images. Inherent: Input images retain the natural primary-beam weighting of the visibilities. Weighted: Full primary-beam-squared weighting.", "readonly": false, @@ -1063,22 +973,7 @@ ], "positional": false, "keyAttribute": false, - "id": "0070455e-a7c2-4449-86a9-861359e23d31", - "parameterType": "ApplicationArgument", - "usage": "NoPort" - }, - { - "name": "linmos.feeds.image.restored.HIPASSJ1318-21_A_beam10_10arc_split_25.contsub", - "value": "[0.0,0.0] ", - "defaultValue": "", - "description": "", - "readonly": false, - "type": "Object.Array", - "precious": false, - "options": [], - "positional": false, - "keyAttribute": false, - "id": "d8e1c357-02ae-484c-80e6-3b1755f8f56f", + "id": "e4ebb5cc-8b92-497a-a58b-9dbd1028f1a2", "parameterType": "ApplicationArgument", "usage": "NoPort" } @@ -1124,8 +1019,8 @@ "closesLoop": false }, { - "from": -5, - "fromPort": "fb6587b3-fe1f-4cdd-84cc-3fd62e2fad1b", + "from": -1, + "fromPort": "5da0030b-a297-4720-a7c8-dad0a27af591", "to": -15, "toPort": "56683f9a-1c74-4082-bc82-88b183b8ea2a", "dataType": "Object.File",