pyproject.toml

[build-system]
requires      = ["setuptools>=64", "setuptools-scm>=8"]
build-backend = "setuptools.build_meta"


[project]
name            = "ovrlpy"
description     = "A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data."
readme          = { file = "README.md", content-type = "text/markdown" }
license         = { file = "LICENSE" }
requires-python = ">=3.6, <3.13"
dynamic         = ["version"]

authors = [
    { name = "Sebastian Tiesmeyer", email = "sebastian.tiesmeyer@bih-charite.de" },
]
dependencies = [
    "anndata",
    "matplotlib",
    "matplotlib-scalebar",
    "numpy",
    "pandas",
    "scikit-image >= 0.18",
    "scikit-learn",
    "scipy",
    "tqdm",
    "umap-learn",
]
classifiers = [
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[project.optional-dependencies]
tutorial = ["pandas[parquet]"]
docs = [
    "sphinx",
    "sphinx-autoapi>=3.1",
    "sphinx-copybutton",
    "sphinx-rtd-theme",
    "myst-nb",
]

[project.urls]
Homepage      = "https://github.com/HiDiHlabs/ovrl.py"
Documentation = "https://ovrlpy.readthedocs.io"
Repository    = "https://github.com/HiDiHlabs/ovrl.py"
Issues        = "https://github.com/HiDiHlabs/ovrl.py/issues"


[tool]

[tool.setuptools]
packages = ["ovrlpy"]