build_interface_pdaf.ksh

#! /bin/ksh
#

always_da(){
route "${cyellow}>> always_da${cnormal}"
route "${cyellow}<< always_da${cnormal}"
}

substitutions_da(){
route "${cyellow}>> substitutions_da${cnormal}"
  c_substitutions_pdaf
route "${cyellow}<< substitutions_da${cnormal}"
}

configure_da(){
route "${cyellow}>> configure_da${cnormal}"

#PDAF part configuration variables
  export PDAF_DIR=$dadir
  if [[ $compiler == "Gnu" ]]; then
    export PDAF_ARCH=linux_gfortran_openmpi
  else
    export PDAF_ARCH=linux_ifort
  fi

  if [[ $profiling == "scalasca" ]]; then
    comFC="scorep-mpif90"
    comCC="scorep-mpicc"
  else
    comFC="${mpiPath}/bin/mpif90"
    comCC="${mpiPath}/bin/mpicc"
  fi

  pdaflib_cpp_defs=" "
  # pdaflib_cpp_defs+=" -DPDAF_DEBUG "

#    libs_src=" -L$lapackPath -L${mpiPath}/lib64"
#    libs_src=" -L$lapackPath -lopenblas -L${mpiPath}/lib64"
#    libs_src=" $lapackPath/mkl/lib/intel64/libmkl_intel_lp64.a $lapackPath/mkl/lib/intel64/libmkl_intel_thread.a $lapackPath/mkl/lib/intel64/libmkl_core.a -L${mpiPath}/lib64"
#    libs_src=" -L$lapackPath -llapack -lblas -L${mpiPath}/lib64"
#    libs_src=" -L$lapackPath/mkl/lib/intel64 -Wl,--no-as-needed -lmkl_scalapack_ilp64 -lmkl_cdft_core -lmkl_intel_ilp64 -lmkl_sequential -lmkl_core -lmkl_blacs_intelmpi_ilp64 -lm -ldl -L${mpiPath}/lib64 -lirc -lintlc"
  if [[ $compiler == "Gnu" ]]; then
    libs_src=" -ldl $lapackPath/mkl/latest/lib/intel64/libmkl_gf_lp64.a $lapackPath/mkl/latest/lib/intel64/libmkl_gnu_thread.a $lapackPath/mkl/latest/lib/intel64/libmkl_core.a -L${mpiPath}/lib64"
  else
    libs_src=" $lapackPath/mkl/latest/lib/intel64/libmkl_intel_lp64.a $lapackPath/mkl/latest/lib/intel64/libmkl_intel_thread.a $lapackPath/mkl/latest/lib/intel64/libmkl_core.a -L${mpiPath}/lib64"
  fi

  c_configure_pdaf_arch

#PDAF interface part configuration variables
  importFlags=" "
  importFlagsOAS=" "
  importFlagsPFL=" "
  importFlagsCLM=" "
  importFlagsCOS=" "
  importFlagsDA=" "
  cppdefs=" "
  # cppdefs+=" ${pf}-DOLD_TRUNCATE_SAT "
  # cppdefs+=" ${pf}-DPDAF_DEBUG "
  obj=' '
  libs=" -L$mpiPath -lmpich -L$netcdfPath/lib/ -lnetcdff -lnetcdf "
  libsOAS=" "
  libsPFL=" "
  libsCLM=" "
  libsCOS=" "
  pf=""

  # Oasis include dirs
  importFlagsOAS+="-I$oasdir/$platform/build/lib/psmile.MPI1 "
  importFlagsOAS+="-I$oasdir/$platform/build/lib/scrip "

  # CLM include dirs
  importFlagsCLM+="-I$clmdir/build/ "

  # COSMO include dirs
  importFlagsCOS+="-I$cosdir/obj "

  # ParFlow include dirs
  importFlagsPFL+="-I$pfldir/pfsimulator/parflow_lib "
  importFlagsPFL+="-I$pfldir/pfsimulator/amps/oas3 "
  importFlagsPFL+="-I$pfldir/pfsimulator/amps/common "
  if [[ ${mList[3]} == parflow ]] ; then
    importFlagsPFL+="-I$pfldir/build/include "
    if [[ $processor == "GPU" ]]; then
      importFlagsPFL+="-I$pfldir/rmm/include/rmm "
    fi
  else
    importFlagsPFL+="-I$pfldir/pfsimulator/include "
  fi

  # DA include dirs
  importFlagsDA+="-I$dadir/interface/model/common "
  if [[ $withPFL == "true" ]] ; then
    importFlagsDA+="-I$dadir/interface/model/${mList[3]} "
  fi

  # Oasis libraries
  libsOAS+="-lpsmile.MPI1 "
  libsOAS+="-lmct "
  libsOAS+="-lmpeu "
  libsOAS+="-lscrip "

  # CLM libraries
  libsCLM+="-lclm "

  # COSMO libraries
  libsCOS+="-lcosmo "
  if [[ ${mList[2]} == "cosmo5_1" ]] ; then
    libsCOS+="-L$gribPath/lib/ "
    libsCOS+="-leccodes_f90 "
    libsCOS+="-leccodes "
  else
    libsCOS+="$grib1Path/libgrib1.a "
  fi

  # ParFlow library paths and libraries
  libsPFL+="-lpfsimulator "
  libsPFL+="-lamps "
  libsPFL+="-lpfkinsol "
  libsPFL+="-lgfortran "
  libsPFL+="-lcjson "
  if [[ $processor == "GPU" ]]; then
    libsPFL+="-lstdc++ "
    libsPFL+="-lcudart "
    libsPFL+="-lrmm "
    libsPFL+="-lnvToolsExt "
  fi
  libsPFL+="-L$hyprePath/lib -lHYPRE "
  libsPFL+="-L$siloPath/lib -lsilo "

  if [[ $withOAS == "false" && $withPFL == "true" ]] ; then
     importFlags+=$importFlagsPFL
     importFlags+=$importFlagsDA
     cppdefs+=" ${pf}-DPARFLOW_STAND_ALONE "
     libs+=$libsPFL
     obj+=' $(OBJPF) '
  fi

  if [[ $withOAS == "false" && $withCLM == "true" ]] ; then
    if [[ ${mList[1]} == clm3_5 ]] ; then
     importFlags+=$importFlagsCLM
     importFlags+=$importFlagsDA
     cppdefs+=" ${pf}-DCLMSA "
     libs+=$libsCLM
     obj+=' $(OBJCLM) print_update_clm.o'
    fi
    
    if [[ ${mList[1]} == clm5_0 ]] ; then
     importFlags+=$importFlagsDA
     importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/include "
     importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include "
     importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/include "
     importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/clm/obj "
     importFlags+=" -I$clmdir/build/atm/obj "
     importFlags+=" -I$clmdir/build/ice/obj "
     importFlags+=" -I$clmdir/build/ocn/obj "
     importFlags+=" -I$clmdir/build/glc/obj "
     importFlags+=" -I$clmdir/build/rof/obj "
     importFlags+=" -I$clmdir/build/wav/obj "
     importFlags+=" -I$clmdir/build/esp/obj "
     importFlags+=" -I$clmdir/build/cpl/obj "
     importFlags+=" -I$clmdir/build/lib/include "
     importFlags+=" -I$clmdir/build/ "
     cppdefs+=" ${pf}-DCLMSA ${pf}-DCLMFIVE "
     libs+=" -L$clmdir/build/lib/ -lcpl "
     libs+=" -L$clmdir/build/lib/ -latm -lice "
     libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/lib/ -lclm "
     libs+=" -L$clmdir/build/lib/ -locn -lrof -lglc -lwav -lesp "
     libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/lib -lcsm_share "
     libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu  "
     libs+=" -lpnetcdf  -mkl -lnetcdff -lnetcdf "
     obj+=' $(OBJCLM5)'
    fi
    if [[ ${mList[1]} == eclm ]] ; then
     comment "Needs to be updated with eCLM coupling configuration, but have to have something here otherwise compilation complains about the if / fi construct "
     #importFlags+=$importFlagsDA
     # importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/include "
     # importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include "
     # importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/include "
     # importFlags+=" -I$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/clm/obj "
     # importFlags+=" -I$clmdir/build/atm/obj "
     # importFlags+=" -I$clmdir/build/ice/obj "
     # importFlags+=" -I$clmdir/build/ocn/obj "
     # importFlags+=" -I$clmdir/build/glc/obj "
     # importFlags+=" -I$clmdir/build/rof/obj "
     # importFlags+=" -I$clmdir/build/wav/obj "
     # importFlags+=" -I$clmdir/build/esp/obj "
     # importFlags+=" -I$clmdir/build/cpl/obj "
     # importFlags+=" -I$clmdir/build/lib/include "
     # importFlags+=" -I$clmdir/build/ "
     # cppdefs+=" ${pf} -DCLMFIVE"
     # libs+=" -L$clmdir/build/lib/ -lcpl "
     # libs+=" -L$clmdir/build/lib/ -latm -lice "
     # libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/lib/ -lclm "
     # libs+=" -L$clmdir/build/lib/ -locn -lrof -lglc -lwav -lesp "
     # libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/lib -lcsm_share "
     # libs+=" -L$clmdir/build/intel/mpi/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu  "
     # libs+=" -lpnetcdf  -mkl -lnetcdff -lnetcdf "
     # obj+=' $(OBJCLM5)'
    fi
  fi

  if [[ $withCLM == "true" && $withCOS == "true" && $withPFL == "false" ]] ; then

    if [[ ${mList[1]} == clm5_0 ]] ; then
      comment "Not yet implemented combination of pdaf and models (clm5_0)"
      exit 1
    fi
    if [[ ${mList[1]} == eclm ]] ; then
      comment "Not yet implemented combination of pdaf and models (eclm)"
      exit 1
    fi

     importFlags+=$importFlagsCLM
     importFlags+=$importFlagsOAS
     importFlags+=$importFlagsCOS
     importFlags+=$importFlagsDA
     cppdefs+=" ${pf}-DCOUP_OAS_COS ${pf}-DGRIBDWD ${pf}-DNETCDF ${pf}-DHYMACS ${pf}-DMAXPATCH_PFT=1 "
     if [[ $cplscheme == "true" ]] ; then ; cppdefs+=" ${pf}-DCPL_SCHEME_F " ; fi
     if [[ $readCLM == "true" ]] ; then ; cppdefs+=" ${pf}-DREADCLM " ; fi
     libs+=$libsCLM
     libs+=$libsCOS
     libs+=$libsOAS
     obj+=' $(OBJCLM) $(OBJCOSMO) '
  fi

  if [[ $withCLM == "true" && $withCOS == "false" && $withPFL == "true" ]] ; then
    
    if [[ ${mList[1]} == clm5_0 ]] ; then
      comment "Not yet implemented combination of pdaf and models (clm5_0)"
      exit 1
    fi
    if [[ ${mList[1]} == eclm ]] ; then
      comment "Not yet implemented combination of pdaf and models (eclm)"
      exit 1
    fi

     importFlags+=$importFlagsCLM
     importFlags+=$importFlagsOAS
     importFlags+=$importFlagsPFL
     importFlags+=$importFlagsDA
     cppdefs+=" ${pf}-DCOUP_OAS_PFL ${pf}-DMAXPATCH_PFT=1 "
     cppdefs+=" ${pf}-DOBS_ONLY_PARFLOW " # Remove for observations from both ParFlow + CLM
     if [[ $readCLM == "true" ]] ; then ; cppdefs+=" ${pf}-DREADCLM " ; fi
     if [[ $freeDrain == "true" ]] ; then ; cppdefs+=" ${pf}-DFREEDRAINAGE " ; fi
     libs+=$libsCLM
     libs+=$libsOAS
     libs+=$libsPFL
     obj+=' $(OBJCLM) $(OBJPF) '
  fi
  if [[ $withCLM == "true" && $withCOS == "true" && $withPFL == "true" ]] ; then

    if [[ ${mList[1]} == clm5_0 ]] ; then
      comment "Not yet implemented combination of pdaf and models (clm5_0)"
      exit 1
    fi
    if [[ ${mList[1]} == eclm ]] ; then
      comment "Not yet implemented combination of pdaf and models (eclm)"
      exit 1
    fi

     importFlags+=$importFlagsCLM
     importFlags+=$importFlagsOAS
     importFlags+=$importFlagsPFL
     importFlags+=$importFlagsCOS
     importFlags+=$importFlagsDA
     cppdefs+=" ${pf}-DCOUP_OAS_COS ${pf}-DGRIBDWD ${pf}-DNETCDF ${pf}-DHYMACS ${pf}-DMAXPATCH_PFT=1 ${pf}-DCOUP_OAS_PFL "
     if [[ $cplscheme == "true" ]] ; then ; cppdefs+=" ${pf}-DCPL_SCHEME_F " ; fi
     if [[ $readCLM == "true" ]] ; then ; cppdefs+=" ${pf}-DREADCLM " ; fi
     if [[ $freeDrain == "true" ]] ; then ; cppdefs+=" ${pf}-DFREEDRAINAGE " ; fi
     libs+=$libsCLM
     libs+=$libsOAS
     libs+=$libsCOS
     libs+=$libsPFL
     obj+=' $(OBJCLM) $(OBJCOSMO) $(OBJPF) '
  fi

  c_configure_pdaf

route "${cyellow}<< configure_da${cnormal}"
}

make_da(){
route "${cyellow}>> make_da${cnormal}"
  c_make_pdaf
route "${cyellow}<< make_da${cnormal}"
}