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ubuntu_stack_vols.yml
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name: Stack VOLs
on:
push:
branches: [ master, dev ]
paths-ignore:
- '**/*.md'
- '**/*.txt'
- '**/*.jpg'
- '**/*.png'
- 'docs/*'
- 'case_studies/*'
pull_request:
branches: [ master, dev ]
paths-ignore:
- '**/*.md'
- '**/*.txt'
- '**/*.jpg'
- '**/*.png'
- 'docs/*'
- 'case_studies/*'
env:
MPICH_VERSION: 4.1.2
HDF5_VERSION: 1.14.2
ARGOBOTS_VERSION: 1.1
ASYNC_VOL_VERSION: 1.8.1
jobs:
build:
runs-on: ubuntu-latest
timeout-minutes: 60
steps:
- uses: actions/checkout@v3
- name: Set up dependencies
run: |
sudo apt-get update
sudo apt-get -y install automake autoconf libtool libtool-bin m4 cmake
# The MPICH installed on github actions is too slow
# sudo apt-get install mpich
# mpicc -v
# zlib
sudo apt-get -y install zlib1g-dev
- name: Build MPICH
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
rm -rf ${GITHUB_WORKSPACE}/MPICH
mkdir ${GITHUB_WORKSPACE}/MPICH
cd ${GITHUB_WORKSPACE}/MPICH
wget -q https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz
gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf -
cd mpich-${MPICH_VERSION}
./configure --prefix=${GITHUB_WORKSPACE}/MPICH \
--silent \
--enable-romio \
--with-file-system=ufs \
--with-device=ch3:sock \
--disable-fortran \
CC=gcc
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1
make -s -j 8 distclean >> qout 2>&1
- name: Install HDF5
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
rm -rf ${GITHUB_WORKSPACE}/HDF5
mkdir ${GITHUB_WORKSPACE}/HDF5
cd ${GITHUB_WORKSPACE}/HDF5
VER_MAJOR=${HDF5_VERSION%.*}
wget -cq https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${VER_MAJOR}/hdf5-${HDF5_VERSION}/src/hdf5-${HDF5_VERSION}.tar.gz
tar -zxf hdf5-${HDF5_VERSION}.tar.gz
cd hdf5-${HDF5_VERSION}
./configure --prefix=${GITHUB_WORKSPACE}/HDF5 \
--silent \
--enable-parallel \
--enable-build-mode=production \
--enable-unsupported \
--enable-threadsafe \
--disable-doxygen-doc \
--disable-doxygen-man \
--disable-doxygen-html \
--disable-tests \
--disable-fortran \
--disable-cxx \
CC=${GITHUB_WORKSPACE}/MPICH/bin/mpicc
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1
make -s -j 8 distclean >> qout 2>&1
- name: Install Argobots
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
ABT_DIR=${GITHUB_WORKSPACE}/Argobots
rm -rf ${ABT_DIR}
mkdir ${ABT_DIR}
cd ${ABT_DIR}
wget -qc https://github.com/pmodels/argobots/archive/refs/tags/v${ARGOBOTS_VERSION}.tar.gz
tar -xf v${ARGOBOTS_VERSION}.tar.gz
cd argobots-${ARGOBOTS_VERSION}
./autogen.sh
./configure --prefix=${ABT_DIR} \
--silent \
CC=${GITHUB_WORKSPACE}/MPICH/bin/mpicc \
CXX=${GITHUB_WORKSPACE}/MPICH/bin/mpicxx
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1
make -s -j 8 distclean >> qout 2>&1
- name: Install Async VOL
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export HDF5_ROOT=${HDF5_DIR}
rm -rf ${ASYNC_DIR}
mkdir ${ASYNC_DIR}
cd ${ASYNC_DIR}
wget -qc https://github.com/hpc-io/vol-async/archive/refs/tags/v${ASYNC_VOL_VERSION}.tar.gz
tar -xf v${ASYNC_VOL_VERSION}.tar.gz
cd vol-async-${ASYNC_VOL_VERSION}
mkdir build
cd build
CC=${GITHUB_WORKSPACE}/MPICH/bin/mpicc \
CXX=${GITHUB_WORKSPACE}/MPICH/bin/mpicxx \
cmake .. -DCMAKE_INSTALL_PREFIX=${ASYNC_DIR}
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1
- name: Install Cache VOL
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CAHCE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_ROOT=${HDF5_DIR}
rm -rf ${CAHCE_DIR}
mkdir ${CAHCE_DIR}
cd ${CAHCE_DIR}
git clone https://github.com/hpc-io/vol-cache.git
cd vol-cache
mkdir build
cd build
export LD_LIBRARY_PATH="$ABT_DIR/lib:$LD_LIBRARY_PATH"
CC=${GITHUB_WORKSPACE}/MPICH/bin/mpicc \
CXX=${GITHUB_WORKSPACE}/MPICH/bin/mpicxx \
CFLAGS=-DNDEBUG \
HDF5_VOL_DIR=${ASYNC_DIR} \
cmake .. -DCMAKE_INSTALL_PREFIX=${CAHCE_DIR}
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1
- name: configure and compile Log VOL connectror
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
LOGVOL_DIR=${GITHUB_WORKSPACE}/log_vol_install
autoreconf -i
./configure --prefix=${LOGVOL_DIR} \
--with-hdf5=${GITHUB_WORKSPACE}/HDF5 \
--with-mpi=${GITHUB_WORKSPACE}/MPICH
# Do NOT test QMCPACK, as it requires FFTW which fails to build
make -s LIBTOOLFLAGS=--silent V=1 -j 8 install
make -s LIBTOOLFLAGS=--silent V=1 -j 8 tests
- name: Print config.log if error
if: ${{ failure() }}
run: |
cat ${GITHUB_WORKSPACE}/config.log
- name: Serial-run test - make check
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make -s check
- name: Print log
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
fname=`find tests utils examples -type f -name "*.log"`
for f in $fname ; do \
bname=`basename $f` ; \
if test "x$bname" != xconfig.log ; then \
echo "-------- dump $f ----------------------------" ; \
cat $f ; \
fi ; \
done
- name: Parallel-run test - make ptest
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
make -s ptest
- name: Test Cache and Async VOL - make check
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${CACHE_DIR}/lib:${ASYNC_DIR}/lib
export LD_LIBRARY_PATH=${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="cache_ext config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
export TEST_NATIVE_VOL_ONLY=1
make -s check
unset TEST_NATIVE_VOL_ONLY
- name: Print log
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
fname=`find tests utils examples -type f -name "*.log"`
for f in $fname ; do \
bname=`basename $f` ; \
if test "x$bname" != xconfig.log ; then \
echo "-------- dump $f ----------------------------" ; \
cat $f ; \
fi ; \
done
- name: Test Cache and Async VOL - make ptest
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${CACHE_DIR}/lib:${ASYNC_DIR}/lib
export LD_LIBRARY_PATH=${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="cache_ext config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
export TEST_NATIVE_VOL_ONLY=1
make -s ptest
unset TEST_NATIVE_VOL_ONLY
- name: Test stacking Log VOL on top of Cache VOL only - make check
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export LOGVOL_DIR=${GITHUB_WORKSPACE}/log_vol_install
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib
export LD_LIBRARY_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=0;under_info={}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
make -s check
- name: Print log
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
fname=`find tests utils examples -type f -name "*.log"`
for f in $fname ; do \
bname=`basename $f` ; \
if test "x$bname" != xconfig.log ; then \
echo "-------- dump $f ----------------------------" ; \
cat $f ; \
fi ; \
done
- name: Test stacking Log VOL on top of Cache VOL only - make ptest
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export LOGVOL_DIR=${GITHUB_WORKSPACE}/log_vol_install
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib
export LD_LIBRARY_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=0;under_info={}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
make -s ptest
- name: Test stacking Log VOL on top of Cache and Async VOL - make check
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export LOGVOL_DIR=${GITHUB_WORKSPACE}/log_vol_install
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib
export LD_LIBRARY_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
make -s check
- name: Print log
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
fname=`find tests utils examples -type f -name "*.log"`
for f in $fname ; do \
bname=`basename $f` ; \
if test "x$bname" != xconfig.log ; then \
echo "-------- dump $f ----------------------------" ; \
cat $f ; \
fi ; \
done
- name: Test stacking Log VOL on top of Cache and Async VOL - make ptest
if: ${{ success() }}
run: |
cd ${GITHUB_WORKSPACE}
export ABT_DIR=${GITHUB_WORKSPACE}/Argobots
export ASYNC_DIR=${GITHUB_WORKSPACE}/Async
export CACHE_DIR=${GITHUB_WORKSPACE}/Cache
export HDF5_DIR=${GITHUB_WORKSPACE}/HDF5
export LOGVOL_DIR=${GITHUB_WORKSPACE}/log_vol_install
export HDF5_ROOT=${HDF5_DIR}
export HDF5_PLUGIN_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib
export LD_LIBRARY_PATH=${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_DIR}/lib:${LD_LIBRARY_PATH}
export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}}"
export MPICH_MAX_THREAD_SAFETY=multiple
export HDF5_USE_FILE_LOCKING=FALSE
export HDF5_ASYNC_DISABLE_DSET_GET=0
# Start async execution at file close time
export HDF5_ASYNC_EXE_FCLOSE=1
# Start async execution at group close time
export HDF5_ASYNC_EXE_GCLOSE=1
# Start async execution at dataset close time
export HDF5_ASYNC_EXE_DCLOSE=1
make -s ptest
- name: make distclean
if: ${{ always() }}
run: |
cd ${GITHUB_WORKSPACE}
make -s distclean