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Gene name #101

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tiffanyformosa opened this issue Aug 25, 2022 · 0 comments
Open

Gene name #101

tiffanyformosa opened this issue Aug 25, 2022 · 0 comments

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@tiffanyformosa
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I was trying to do some matched ATAC-RNA analysis and I found that some genes have different names between this package and my SeuratObject? Ex: Nkx11 (chromVar) vs Nkx1-1 (Seurat), and Q8VHG7 (in chromVar) which appears to be the UniProt URL for Obox2? https://www.uniprot.org/uniprotkb/Q8VHG7/entry

Is this due to a difference in the mouse genomes used to create the objects in this package? I am using cisBP 2.0 from chromVar and mm10 in Seurat.
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@tiffanyformosa