doc/sv-callers_single.svg

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<!-- Title: snakemake_dag Pages: 1 -->
<svg width="540pt" height="430pt"
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<title>snakemake_dag</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-426 536,-426 536,4 -4,4"/>
<!-- 0 -->
<g id="node1" class="node">
<title>0</title>
<path fill="none" stroke="#d87d56" stroke-width="2" d="M334,-36C334,-36 304,-36 304,-36 298,-36 292,-30 292,-24 292,-24 292,-12 292,-12 292,-6 298,0 304,0 304,0 334,0 334,0 340,0 346,-6 346,-12 346,-12 346,-24 346,-24 346,-30 340,-36 334,-36"/>
<text text-anchor="middle" x="319" y="-15.5" font-family="sans" font-size="10.00">all</text>
</g>
<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#d8cb56" stroke-width="2" d="M349.5,-108C349.5,-108 288.5,-108 288.5,-108 282.5,-108 276.5,-102 276.5,-96 276.5,-96 276.5,-84 276.5,-84 276.5,-78 282.5,-72 288.5,-72 288.5,-72 349.5,-72 349.5,-72 355.5,-72 361.5,-78 361.5,-84 361.5,-84 361.5,-96 361.5,-96 361.5,-102 355.5,-108 349.5,-108"/>
<text text-anchor="middle" x="319" y="-87.5" font-family="sans" font-size="10.00">survivor_merge</text>
</g>
<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
<path fill="none" stroke="grey" stroke-width="2" d="M319,-71.7C319,-63.98 319,-54.71 319,-46.11"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="322.5,-46.1 319,-36.1 315.5,-46.1 322.5,-46.1"/>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
<path fill="none" stroke="#68d856" stroke-width="2" d="M194,-180C194,-180 142,-180 142,-180 136,-180 130,-174 130,-168 130,-168 130,-156 130,-156 130,-150 136,-144 142,-144 142,-144 194,-144 194,-144 200,-144 206,-150 206,-156 206,-156 206,-168 206,-168 206,-174 200,-180 194,-180"/>
<text text-anchor="middle" x="168" y="-159.5" font-family="sans" font-size="10.00">survivor_filter</text>
</g>
<!-- 2&#45;&gt;1 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M204.94,-143.88C225.49,-134.35 251.25,-122.41 273.09,-112.28"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="274.58,-115.45 282.18,-108.07 271.64,-109.1 274.58,-115.45"/>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M192,-257C192,-257 122,-257 122,-257 116,-257 110,-251 110,-245 110,-245 110,-228 110,-228 110,-222 116,-216 122,-216 122,-216 192,-216 192,-216 198,-216 204,-222 204,-228 204,-228 204,-245 204,-245 204,-251 198,-257 192,-257"/>
<text text-anchor="middle" x="157" y="-245" font-family="sans" font-size="10.00">viola</text>
<text text-anchor="middle" x="157" y="-234" font-family="sans" font-size="10.00">outdir: manta_out</text>
<text text-anchor="middle" x="157" y="-223" font-family="sans" font-size="10.00">prefix: manta</text>
</g>
<!-- 3&#45;&gt;2 -->
<g id="edge6" class="edge">
<title>3&#45;&gt;2</title>
<path fill="none" stroke="grey" stroke-width="2" d="M160.01,-215.69C161.19,-207.91 162.56,-198.84 163.84,-190.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="167.33,-190.73 165.37,-180.32 160.41,-189.68 167.33,-190.73"/>
</g>
<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M191,-334C191,-334 123,-334 123,-334 117,-334 111,-328 111,-322 111,-322 111,-305 111,-305 111,-299 117,-293 123,-293 123,-293 191,-293 191,-293 197,-293 203,-299 203,-305 203,-305 203,-322 203,-322 203,-328 197,-334 191,-334"/>
<text text-anchor="middle" x="157" y="-322" font-family="sans" font-size="10.00">manta_s</text>
<text text-anchor="middle" x="157" y="-311" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="157" y="-300" font-family="sans" font-size="10.00">sample: T3</text>
</g>
<!-- 4&#45;&gt;3 -->
<g id="edge7" class="edge">
<title>4&#45;&gt;3</title>
<path fill="none" stroke="grey" stroke-width="2" d="M157,-292.79C157,-284.96 157,-275.77 157,-267.16"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="160.5,-267.07 157,-257.07 153.5,-267.07 160.5,-267.07"/>
</g>
<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#68d856" stroke-width="2" d="M295,-180C295,-180 243,-180 243,-180 237,-180 231,-174 231,-168 231,-168 231,-156 231,-156 231,-150 237,-144 243,-144 243,-144 295,-144 295,-144 301,-144 307,-150 307,-156 307,-156 307,-168 307,-168 307,-174 301,-180 295,-180"/>
<text text-anchor="middle" x="269" y="-159.5" font-family="sans" font-size="10.00">survivor_filter</text>
</g>
<!-- 5&#45;&gt;1 -->
<g id="edge3" class="edge">
<title>5&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M281.36,-143.7C287.23,-135.47 294.37,-125.48 300.84,-116.42"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="303.82,-118.28 306.78,-108.1 298.12,-114.21 303.82,-118.28"/>
</g>
<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M297.5,-257C297.5,-257 234.5,-257 234.5,-257 228.5,-257 222.5,-251 222.5,-245 222.5,-245 222.5,-228 222.5,-228 222.5,-222 228.5,-216 234.5,-216 234.5,-216 297.5,-216 297.5,-216 303.5,-216 309.5,-222 309.5,-228 309.5,-228 309.5,-245 309.5,-245 309.5,-251 303.5,-257 297.5,-257"/>
<text text-anchor="middle" x="266" y="-245" font-family="sans" font-size="10.00">viola</text>
<text text-anchor="middle" x="266" y="-234" font-family="sans" font-size="10.00">outdir: delly_out</text>
<text text-anchor="middle" x="266" y="-223" font-family="sans" font-size="10.00">prefix: delly</text>
</g>
<!-- 6&#45;&gt;5 -->
<g id="edge8" class="edge">
<title>6&#45;&gt;5</title>
<path fill="none" stroke="grey" stroke-width="2" d="M266.82,-215.69C267.14,-207.91 267.52,-198.84 267.86,-190.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="271.37,-190.46 268.28,-180.32 264.37,-190.17 271.37,-190.46"/>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#56d86b" stroke-width="2" d="M289.5,-331.5C289.5,-331.5 242.5,-331.5 242.5,-331.5 236.5,-331.5 230.5,-325.5 230.5,-319.5 230.5,-319.5 230.5,-307.5 230.5,-307.5 230.5,-301.5 236.5,-295.5 242.5,-295.5 242.5,-295.5 289.5,-295.5 289.5,-295.5 295.5,-295.5 301.5,-301.5 301.5,-307.5 301.5,-307.5 301.5,-319.5 301.5,-319.5 301.5,-325.5 295.5,-331.5 289.5,-331.5"/>
<text text-anchor="middle" x="266" y="-311" font-family="sans" font-size="10.00">delly_merge</text>
</g>
<!-- 7&#45;&gt;6 -->
<g id="edge9" class="edge">
<title>7&#45;&gt;6</title>
<path fill="none" stroke="grey" stroke-width="2" d="M266,-295.48C266,-287.1 266,-276.76 266,-267.13"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="269.5,-267.1 266,-257.1 262.5,-267.1 269.5,-267.1"/>
</g>
<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M80,-422C80,-422 12,-422 12,-422 6,-422 0,-416 0,-410 0,-410 0,-382 0,-382 0,-376 6,-370 12,-370 12,-370 80,-370 80,-370 86,-370 92,-376 92,-382 92,-382 92,-410 92,-410 92,-416 86,-422 80,-422"/>
<text text-anchor="middle" x="46" y="-410" font-family="sans" font-size="10.00">delly_s</text>
<text text-anchor="middle" x="46" y="-399" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="46" y="-388" font-family="sans" font-size="10.00">sample: T3</text>
<text text-anchor="middle" x="46" y="-377" font-family="sans" font-size="10.00">sv_type: BND</text>
</g>
<!-- 8&#45;&gt;7 -->
<g id="edge10" class="edge">
<title>8&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M92.05,-373.61C95.07,-372.35 98.07,-371.14 101,-370 149.35,-351.24 162.94,-350.81 212,-334 214.88,-333.01 217.84,-331.99 220.82,-330.94"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="222.07,-334.21 230.33,-327.57 219.74,-327.61 222.07,-334.21"/>
</g>
<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M190,-422C190,-422 122,-422 122,-422 116,-422 110,-416 110,-410 110,-410 110,-382 110,-382 110,-376 116,-370 122,-370 122,-370 190,-370 190,-370 196,-370 202,-376 202,-382 202,-382 202,-410 202,-410 202,-416 196,-422 190,-422"/>
<text text-anchor="middle" x="156" y="-410" font-family="sans" font-size="10.00">delly_s</text>
<text text-anchor="middle" x="156" y="-399" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="156" y="-388" font-family="sans" font-size="10.00">sample: T3</text>
<text text-anchor="middle" x="156" y="-377" font-family="sans" font-size="10.00">sv_type: DEL</text>
</g>
<!-- 9&#45;&gt;7 -->
<g id="edge11" class="edge">
<title>9&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M190.2,-369.97C204.3,-359.65 220.54,-347.77 234.37,-337.65"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="236.62,-340.34 242.62,-331.61 232.48,-334.69 236.62,-340.34"/>
</g>
<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M300,-422C300,-422 232,-422 232,-422 226,-422 220,-416 220,-410 220,-410 220,-382 220,-382 220,-376 226,-370 232,-370 232,-370 300,-370 300,-370 306,-370 312,-376 312,-382 312,-382 312,-410 312,-410 312,-416 306,-422 300,-422"/>
<text text-anchor="middle" x="266" y="-410" font-family="sans" font-size="10.00">delly_s</text>
<text text-anchor="middle" x="266" y="-399" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="266" y="-388" font-family="sans" font-size="10.00">sample: T3</text>
<text text-anchor="middle" x="266" y="-377" font-family="sans" font-size="10.00">sv_type: DUP</text>
</g>
<!-- 10&#45;&gt;7 -->
<g id="edge12" class="edge">
<title>10&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M266,-369.97C266,-361.01 266,-350.88 266,-341.74"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="269.5,-341.61 266,-331.61 262.5,-341.61 269.5,-341.61"/>
</g>
<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M410,-422C410,-422 342,-422 342,-422 336,-422 330,-416 330,-410 330,-410 330,-382 330,-382 330,-376 336,-370 342,-370 342,-370 410,-370 410,-370 416,-370 422,-376 422,-382 422,-382 422,-410 422,-410 422,-416 416,-422 410,-422"/>
<text text-anchor="middle" x="376" y="-410" font-family="sans" font-size="10.00">delly_s</text>
<text text-anchor="middle" x="376" y="-399" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="376" y="-388" font-family="sans" font-size="10.00">sample: T3</text>
<text text-anchor="middle" x="376" y="-377" font-family="sans" font-size="10.00">sv_type: INS</text>
</g>
<!-- 11&#45;&gt;7 -->
<g id="edge13" class="edge">
<title>11&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M341.8,-369.97C327.7,-359.65 311.46,-347.77 297.63,-337.65"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="299.52,-334.69 289.38,-331.61 295.38,-340.34 299.52,-334.69"/>
</g>
<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#56a9d8" stroke-width="2" d="M520,-422C520,-422 452,-422 452,-422 446,-422 440,-416 440,-410 440,-410 440,-382 440,-382 440,-376 446,-370 452,-370 452,-370 520,-370 520,-370 526,-370 532,-376 532,-382 532,-382 532,-410 532,-410 532,-416 526,-422 520,-422"/>
<text text-anchor="middle" x="486" y="-410" font-family="sans" font-size="10.00">delly_s</text>
<text text-anchor="middle" x="486" y="-399" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="486" y="-388" font-family="sans" font-size="10.00">sample: T3</text>
<text text-anchor="middle" x="486" y="-377" font-family="sans" font-size="10.00">sv_type: INV</text>
</g>
<!-- 12&#45;&gt;7 -->
<g id="edge14" class="edge">
<title>12&#45;&gt;7</title>
<path fill="none" stroke="grey" stroke-width="2" d="M439.95,-373.6C436.94,-372.35 433.94,-371.13 431,-370 382.23,-351.15 368.43,-351.03 319,-334 316.44,-333.12 313.81,-332.2 311.16,-331.26"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="312.16,-327.9 301.56,-327.82 309.79,-334.49 312.16,-327.9"/>
</g>
<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#68d856" stroke-width="2" d="M396,-180C396,-180 344,-180 344,-180 338,-180 332,-174 332,-168 332,-168 332,-156 332,-156 332,-150 338,-144 344,-144 344,-144 396,-144 396,-144 402,-144 408,-150 408,-156 408,-156 408,-168 408,-168 408,-174 402,-180 396,-180"/>
<text text-anchor="middle" x="370" y="-159.5" font-family="sans" font-size="10.00">survivor_filter</text>
</g>
<!-- 13&#45;&gt;1 -->
<g id="edge4" class="edge">
<title>13&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M357.39,-143.7C351.4,-135.47 344.12,-125.48 337.52,-116.42"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="340.18,-114.13 331.46,-108.1 334.52,-118.25 340.18,-114.13"/>
</g>
<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M408.5,-257C408.5,-257 339.5,-257 339.5,-257 333.5,-257 327.5,-251 327.5,-245 327.5,-245 327.5,-228 327.5,-228 327.5,-222 333.5,-216 339.5,-216 339.5,-216 408.5,-216 408.5,-216 414.5,-216 420.5,-222 420.5,-228 420.5,-228 420.5,-245 420.5,-245 420.5,-251 414.5,-257 408.5,-257"/>
<text text-anchor="middle" x="374" y="-245" font-family="sans" font-size="10.00">viola</text>
<text text-anchor="middle" x="374" y="-234" font-family="sans" font-size="10.00">outdir: lumpy_out</text>
<text text-anchor="middle" x="374" y="-223" font-family="sans" font-size="10.00">prefix: lumpy</text>
</g>
<!-- 14&#45;&gt;13 -->
<g id="edge15" class="edge">
<title>14&#45;&gt;13</title>
<path fill="none" stroke="grey" stroke-width="2" d="M372.91,-215.69C372.48,-207.91 371.98,-198.84 371.51,-190.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="375,-190.11 370.96,-180.32 368.01,-190.5 375,-190.11"/>
</g>
<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
<path fill="none" stroke="#567bd8" stroke-width="2" d="M408,-334C408,-334 340,-334 340,-334 334,-334 328,-328 328,-322 328,-322 328,-305 328,-305 328,-299 334,-293 340,-293 340,-293 408,-293 408,-293 414,-293 420,-299 420,-305 420,-305 420,-322 420,-322 420,-328 414,-334 408,-334"/>
<text text-anchor="middle" x="374" y="-322" font-family="sans" font-size="10.00">lumpy_s</text>
<text text-anchor="middle" x="374" y="-311" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="374" y="-300" font-family="sans" font-size="10.00">sample: T3</text>
</g>
<!-- 15&#45;&gt;14 -->
<g id="edge16" class="edge">
<title>15&#45;&gt;14</title>
<path fill="none" stroke="grey" stroke-width="2" d="M374,-292.79C374,-284.96 374,-275.77 374,-267.16"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="377.5,-267.07 374,-257.07 370.5,-267.07 377.5,-267.07"/>
</g>
<!-- 16 -->
<g id="node17" class="node">
<title>16</title>
<path fill="none" stroke="#68d856" stroke-width="2" d="M502,-180C502,-180 450,-180 450,-180 444,-180 438,-174 438,-168 438,-168 438,-156 438,-156 438,-150 444,-144 450,-144 450,-144 502,-144 502,-144 508,-144 514,-150 514,-156 514,-156 514,-168 514,-168 514,-174 508,-180 502,-180"/>
<text text-anchor="middle" x="476" y="-159.5" font-family="sans" font-size="10.00">survivor_filter</text>
</g>
<!-- 16&#45;&gt;1 -->
<g id="edge5" class="edge">
<title>16&#45;&gt;1</title>
<path fill="none" stroke="grey" stroke-width="2" d="M437.99,-144.05C416.46,-134.45 389.32,-122.35 366.41,-112.14"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="367.76,-108.91 357.2,-108.03 364.91,-115.3 367.76,-108.91"/>
</g>
<!-- 17 -->
<g id="node18" class="node">
<title>17</title>
<path fill="none" stroke="#56d892" stroke-width="2" d="M519.5,-257C519.5,-257 450.5,-257 450.5,-257 444.5,-257 438.5,-251 438.5,-245 438.5,-245 438.5,-228 438.5,-228 438.5,-222 444.5,-216 450.5,-216 450.5,-216 519.5,-216 519.5,-216 525.5,-216 531.5,-222 531.5,-228 531.5,-228 531.5,-245 531.5,-245 531.5,-251 525.5,-257 519.5,-257"/>
<text text-anchor="middle" x="485" y="-245" font-family="sans" font-size="10.00">viola</text>
<text text-anchor="middle" x="485" y="-234" font-family="sans" font-size="10.00">outdir: gridss_out</text>
<text text-anchor="middle" x="485" y="-223" font-family="sans" font-size="10.00">prefix: gridss</text>
</g>
<!-- 17&#45;&gt;16 -->
<g id="edge17" class="edge">
<title>17&#45;&gt;16</title>
<path fill="none" stroke="grey" stroke-width="2" d="M482.54,-215.69C481.57,-207.91 480.45,-198.84 479.41,-190.45"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="482.86,-189.81 478.15,-180.32 475.91,-190.67 482.86,-189.81"/>
</g>
<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
<path fill="none" stroke="#8fd856" stroke-width="2" d="M519,-334C519,-334 451,-334 451,-334 445,-334 439,-328 439,-322 439,-322 439,-305 439,-305 439,-299 445,-293 451,-293 451,-293 519,-293 519,-293 525,-293 531,-299 531,-305 531,-305 531,-322 531,-322 531,-328 525,-334 519,-334"/>
<text text-anchor="middle" x="485" y="-322" font-family="sans" font-size="10.00">gridss_s</text>
<text text-anchor="middle" x="485" y="-311" font-family="sans" font-size="10.00">path: data/bam/3</text>
<text text-anchor="middle" x="485" y="-300" font-family="sans" font-size="10.00">sample: T3</text>
</g>
<!-- 18&#45;&gt;17 -->
<g id="edge18" class="edge">
<title>18&#45;&gt;17</title>
<path fill="none" stroke="grey" stroke-width="2" d="M485,-292.79C485,-284.96 485,-275.77 485,-267.16"/>
<polygon fill="grey" stroke="grey" stroke-width="2" points="488.5,-267.07 485,-257.07 481.5,-267.07 488.5,-267.07"/>
</g>
</g>
</svg>