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pyproject.toml
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pyproject.toml
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[project]
name = "famli2" # Required
version = "2.0.0.pre" # Required
description = "Functional Analysis of Metagenomes by Likelihood Inferrence 2" # Optional
readme = "README.md" # Optional
requires-python = ">=3.9"
# https://packaging.python.org/en/latest/specifications/core-metadata/#license
license = {file = "LICENSE.txt"}
# This field adds keywords for your project which will appear on the
# project page. What does your project relate to?
#
# Note that this is a list of additional keywords, separated
# by commas, to be used to assist searching for the distribution in a
# larger catalog.
keywords = ["metagenomics", "microbiome", "science"] # Optional
# This should be your name or the name of the organization who originally
# authored the project, and a valid email address corresponding to the name
# listed.
authors = [
{name = "Jonathan L Golob", email = "j-dev@golob.org" },
{name = "Samuel Minot", email = "sminot@fredhutch.org" },
# Optional
]
# This should be your name or the names of the organization who currently
# maintains the project, and a valid email address corresponding to the name
# listed.
maintainers = [
{name = "Jonathan L Golob", email = "j-dev@golob.org" },
]
# Classifiers help users find your project by categorizing it.
#
# For a list of valid classifiers, see https://pypi.org/classifiers/
classifiers = [ # Optional
# How mature is this project? Common values are
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
"Development Status :: 4 - Beta",
# Indicate who your project is intended for
'Intended Audience :: Science/Research',
# Pick your license as you wish
"License :: OSI Approved :: MIT License",
# Specify the Python versions you support here. In particular, ensure
# that you indicate you support Python 3. These classifiers are *not*
# checked by "pip install". See instead "python_requires" below.
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3 :: Only",
]
dependencies = [
'anndata>=0.9.2',
'numpy>=1.25.2',
"pandas>=2.1.1",
'scipy>=1.11.3',
'taichi>=1.6.0',
'toml',
'pytest'
]
# List URLs that are relevant to your project
#
# This field corresponds to the "Project-URL" and "Home-Page" metadata fields:
# https://packaging.python.org/specifications/core-metadata/#project-url-multiple-use
# https://packaging.python.org/specifications/core-metadata/#home-page-optional
#
# Examples listed include a pattern for specifying where the package tracks
# issues, where the source is hosted, where to say thanks to the package
# maintainers, and where to support the project financially. The key is
# what's used to render the link text on PyPI.
[project.urls] # Optional
"Homepage" = "https://github.com/Golob-Minot/FAMLI2"
"Bug Reports" = "https://github.com/Golob-Minot/FAMLI2/issues"
"Source" = "https://github.com/Golob-Minot/FAMLI2"
# The following would provide a command line executable called `sample`
# which executes the function `main` from this package when invoked.
[project.scripts] # Optional
famli2 = "FAMLI2.famli2:main"
# This is configuration specific to the `setuptools` build backend.
# If you are using a different build backend, you will need to change this.
[tool.setuptools]
# If there are data files included in your packages that need to be
# installed, specify them here.
#package-data = {"sample" = ["*.dat"]}
[build-system]
# These are the assumed default build requirements from pip:
# https://pip.pypa.io/en/stable/reference/pip/#pep-517-and-518-support
requires = ["setuptools>=43.0.0", "wheel"]
build-backend = "setuptools.build_meta"