environment.yml

name: torchHTBeta2V2UKB
channels:
  - nvidia
  - pytorch-nightly
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1
  - _openmp_mutex=5.1
  - abseil-cpp=20211102.0
  - absl-py=1.4.0
  - aiosignal=1.3.1
  - appdirs=1.4.4
  - asttokens=2.2.1
  - async-timeout=4.0.2
  - attrs=23.1.0
  - backcall=0.2.0
  - backports=1.0
  - backports.functools_lru_cache=1.6.4
  - blas=1.0
  - blinker=1.6.2
  - blosc=1.21.3
  - bottleneck=1.3.5
  - brotli=1.0.9
  - brotli-bin=1.0.9
  - brotlipy=0.7.0
  - brunsli=0.1
  - bzip2=1.0.8
  - c-ares=1.19.0
  - ca-certificates=2023.7.22
  - cachetools=5.3.1
  - certifi=2023.7.22
  - cffi=1.15.1
  - cfitsio=3.470
  - charls=2.2.0
  - charset-normalizer=2.0.4
  - cloudpickle=2.2.1
  - contourpy=1.0.5
  - cryptography=38.0.4
  - cuda-cudart=11.8.89
  - cuda-cupti=11.8.87
  - cuda-libraries=11.8.0
  - cuda-nvrtc=11.8.89
  - cuda-nvtx=11.8.86
  - cuda-runtime=11.8.0
  - cycler=0.11.0
  - cytoolz=0.12.0
  - dask-core=2023.4.1
  - dbus=1.13.18
  - debugpy=1.5.1
  - decorator=5.1.1
  - entrypoints=0.4
  - executing=1.2.0
  - expat=2.4.9
  - ffmpeg=4.2.2
  - filelock=3.9.0
  - fontconfig=2.14.1
  - fonttools=4.25.0
  - freetype=2.12.1
  - frozenlist=1.3.3
  - giflib=5.2.1
  - glib=2.69.1
  - gmp=6.2.1
  - gmpy2=2.1.2
  - gnutls=3.6.15
  - google-auth=2.22.0
  - google-auth-oauthlib=1.0.0
  - grpc-cpp=1.48.2
  - grpcio=1.48.2
  - gst-plugins-base=1.14.1
  - gstreamer=1.14.1
  - h5py=3.7.0
  - hdf5=1.10.6
  - icu=58.2
  - idna=3.4
  - imagecodecs=2021.8.26
  - importlib-metadata=6.0.0
  - intel-openmp=2021.4.0
  - ipykernel=6.15.0
  - ipython=8.13.2
  - jedi=0.18.2
  - jpeg=9e
  - jupyter_client=7.4.9
  - jupyter_core=4.12.0
  - jxrlib=1.1
  - kiwisolver=1.4.4
  - krb5=1.19.4
  - lame=3.100
  - lazy_loader=0.1
  - lcms2=2.12
  - ld_impl_linux-64=2.38
  - lerc=3.0
  - libaec=1.0.4
  - libbrotlicommon=1.0.9
  - libbrotlidec=1.0.9
  - libbrotlienc=1.0.9
  - libclang=14.0.6
  - libclang13=14.0.6
  - libcublas=11.11.3.6
  - libcufft=10.9.0.58
  - libcufile=1.6.1.9
  - libcurand=10.3.2.106
  - libcurl=7.88.1
  - libcusolver=11.4.1.48
  - libcusparse=11.7.5.86
  - libdeflate=1.17
  - libedit=3.1.20221030
  - libev=4.33
  - libevent=2.1.12
  - libffi=3.4.4
  - libgcc-ng=11.2.0
  - libgfortran-ng=11.2.0
  - libgfortran5=11.2.0
  - libgomp=11.2.0
  - libidn2=2.3.2
  - libllvm14=14.0.6
  - libnghttp2=1.46.0
  - libnpp=11.8.0.86
  - libnvjpeg=11.9.0.86
  - libopus=1.3.1
  - libpng=1.6.39
  - libpq=12.9
  - libprotobuf=3.20.3
  - libsodium=1.0.18
  - libssh2=1.10.0
  - libstdcxx-ng=11.2.0
  - libtasn1=4.19.0
  - libtiff=4.5.0
  - libunistring=0.9.10
  - libuuid=1.41.5
  - libvpx=1.7.0
  - libwebp=1.2.4
  - libwebp-base=1.2.4
  - libxcb=1.15
  - libxkbcommon=1.0.1
  - libxml2=2.10.3
  - libxslt=1.1.37
  - libzopfli=1.0.3
  - locket=1.0.0
  - lz4-c=1.9.4
  - markdown=3.4.4
  - matplotlib=3.7.1
  - matplotlib-base=3.7.1
  - matplotlib-inline=0.1.6
  - mkl=2021.4.0
  - mkl-service=2.4.0
  - mkl_fft=1.3.1
  - mkl_random=1.2.2
  - mpc=1.1.0
  - mpfr=4.0.2
  - mpmath=1.2.1
  - munkres=1.1.4
  - ncurses=6.4
  - nest-asyncio=1.5.6
  - nettle=3.7.3
  - networkx=2.8.4
  - nspr=4.33
  - nss=3.74
  - numexpr=2.8.4
  - numpy=1.24.3
  - numpy-base=1.24.3
  - oauthlib=3.2.2
  - openh264=2.1.1
  - openjpeg=2.4.0
  - openssl=1.1.1v
  - parso=0.8.3
  - partd=1.2.0
  - pcre=8.45
  - pexpect=4.8.0
  - pickleshare=0.7.5
  - pillow=9.3.0
  - pip=23.0.1
  - ply=3.11
  - pooch=1.4.0
  - prompt-toolkit=3.0.38
  - prompt_toolkit=3.0.38
  - ptyprocess=0.7.0
  - pure_eval=0.2.2
  - pyasn1=0.4.8
  - pyasn1-modules=0.2.7
  - pycparser=2.21
  - pygments=2.15.1
  - pyopenssl=23.0.0
  - pyparsing=3.0.9
  - pyqt=5.15.7
  - pyqt5-sip=12.11.0
  - pysocks=1.7.1
  - python=3.11.3
  - python-dateutil=2.8.2
  - python_abi=3.11
  - pytorch=2.1.0.dev20230518
  - pytorch-cuda=11.8
  - pytorch-mutex=1.0
  - pyu2f=0.1.5
  - pywavelets=1.4.1
  - pyyaml=6.0
  - pyzmq=25.0.2
  - qt-main=5.15.2
  - qt-webengine=5.15.9
  - qtwebkit=5.212
  - re2=2022.04.01
  - readline=8.2
  - requests=2.28.1
  - requests-oauthlib=1.3.1
  - rsa=4.9
  - scikit-image=0.20.0
  - setuptools=66.0.0
  - sip=6.6.2
  - six=1.16.0
  - snappy=1.1.9
  - sqlite=3.41.2
  - stack_data=0.6.2
  - sympy=1.11.1
  - tensorboard=2.13.0
  - tensorboard-data-server=0.7.0
  - tifffile=2021.7.2
  - tk=8.6.12
  - toml=0.10.2
  - toolz=0.12.0
  - torchaudio=2.1.0.dev20230518
  - torchtriton=2.1.0+7d1a95b046
  - torchvision=0.16.0.dev20230518
  - tornado=6.2
  - traitlets=5.9.0
  - typing_extensions=4.5.0
  - urllib3=1.26.14
  - wcwidth=0.2.6
  - werkzeug=2.1.2
  - wheel=0.38.4
  - x264=1!157.20191217
  - xz=5.4.2
  - yaml=0.2.5
  - zeromq=4.3.4
  - zfp=0.5.5
  - zipp=3.11.0
  - zlib=1.2.13
  - zstd=1.5.5
  - pip:
      - adjusttext==0.8
      - aiohttp==3.8.4
      - anndata==0.9.2
      - anyio==3.6.2
      - arrow==1.2.3
      - astroid==2.15.6
      - autograd==1.7.0
      - autograd-gamma==0.5.0
      - beautifulsoup4==4.12.2
      - biocframe==0.5.11
      - biocutils==0.1.5
      - biopython==1.81
      - blessed==1.20.0
      - click==8.1.3
      - colorama==0.4.6
      - concurrent-dataloader==0.0.2
      - croniter==1.3.14
      - cython==3.0.11
      - datacache==1.2.1
      - dataclasses==0.6
      - dateutils==0.6.12
      - deepdiff==6.3.0
      - deprecated==1.2.13
      - dill==0.3.6
      - docker-pycreds==0.4.0
      - docutils==0.20.1
      - einops==0.7.0
      - et-xmlfile==1.1.0
      - fastapi==0.88.0
      - formulaic==1.0.2
      - fsspec==2023.5.0
      - genomicranges==0.4.29
      - gitdb==4.0.10
      - gitpython==3.1.31
      - gtfparse==1.3.0
      - gwaslab==3.4.20
      - h11==0.14.0
      - huggingface-hub==0.24.6
      - humanize==4.6.0
      - imageio==2.28.1
      - inquirer==3.1.3
      - interface-meta==1.3.0
      - iranges==0.2.11
      - isort==5.12.0
      - itsdangerous==2.1.2
      - jinja2==3.1.2
      - joblib==1.2.0
      - lazy-object-proxy==1.9.0
      - lifelines==0.29.0
      - liftover==1.1.16
      - lightning==2.1.0.dev0
      - lightning-cloud==0.5.36
      - lightning-utilities==0.8.0
      - llvmlite==0.41.0
      - local-attention==1.8.6
      - markdown-it-py==2.2.0
      - markupsafe==2.1.2
      - mccabe==0.7.0
      - mdurl==0.1.2
      - memoized-property==1.0.3
      - mock==5.1.0
      - multidict==6.0.4
      - natsort==8.4.0
      - ncls==0.0.68
      - nibabel==5.1.0
      - nose==1.3.7
      - numba==0.58.0
      - openpyxl==3.1.5
      - ordered-set==4.1.0
      - packaging==23.1
      - pandas==1.5.3
      - pandasgwas==1.1.0
      - pathtools==0.1.2
      - patsy==0.5.3
      - platformdirs==3.9.1
      - plotly==5.16.1
      - polars==1.6.0
      - progressbar2==4.2.0
      - progressbar33==2.4
      - protobuf==4.23.1
      - psutil==5.9.5
      - pydantic==1.10.7
      - pyensembl==2.2.3
      - pyhocon==0.3.60
      - pyjwt==2.7.0
      - pylint==2.17.4
      - pynndescent==0.5.10
      - pyreadr==0.5.2
      - pysam==0.19.1
      - pyssim==0.6
      - pythae==0.1.1
      - python-editor==1.0.4
      - python-multipart==0.0.6
      - python-utils==3.7.0
      - pytorch-fid==0.3.0
      - pytorch-lightning==2.0.2
      - pytorch-msssim==0.2.1
      - pytz==2023.3
      - rds2py==0.4.4
      - readchar==4.0.5
      - regex==2024.7.24
      - rich==13.3.5
      - safetensors==0.4.5
      - scanpy==1.9.5
      - scikit-allel==1.3.6
      - scikit-learn==1.2.2
      - scipy==1.10.1
      - seaborn==0.12.2
      - sentry-sdk==1.23.1
      - serializable==0.2.1
      - session-info==1.0.0
      - setproctitle==1.3.2
      - sewar==0.4.5
      - shellingham==1.5.0.post1
      - simpleitk==2.2.1
      - simplejson==3.19.1
      - singlecellexperiment==0.4.6
      - smmap==5.0.0
      - sniffio==1.3.0
      - soupsieve==2.4.1
      - starlette==0.22.0
      - starsessions==1.3.0
      - statsmodels==0.14.0
      - stdlib-list==0.9.0
      - summarizedexperiment==0.4.5
      - tbb==2021.10.0
      - tenacity==8.2.3
      - threadpoolctl==3.1.0
      - tinytimer==0.0.0
      - tokenizers==0.19.1
      - tomlkit==0.11.8
      - torch-tb-profiler==0.4.1
      - torchio==0.18.91
      - torchmetrics==0.11.4
      - tqdm==4.65.0
      - transformers==4.44.2
      - tricorder==0.0.0.4
      - typechecks==0.1.0
      - typer==0.9.0
      - tzdata==2024.1
      - umap-learn==0.5.4
      - uvicorn==0.22.0
      - wandb==0.15.3
      - websocket-client==1.5.1
      - websockets==11.0.3
      - wrapt==1.15.0
      - xmltodict==0.13.0
      - yarl==1.9.2