{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":525371814,"defaultBranch":"main","name":"learnMSA","ownerLogin":"Gaius-Augustus","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-08-16T12:34:02.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/39598608?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1725971464.0","currentOid":""},"activityList":{"items":[{"before":"14df31ff33f469cfa0b519dc18a2730a01a80bc2","after":"50d5fb05714ab569b068792f255ea8fdcd05a80f","ref":"refs/heads/main","pushedAt":"2024-09-10T13:23:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"3514955b7da9c3e28f3936a50dc5d6c0af4f1fa1","after":"14df31ff33f469cfa0b519dc18a2730a01a80bc2","ref":"refs/heads/main","pushedAt":"2024-09-10T13:10:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fixed CPU mode","shortMessageHtmlLink":"fixed CPU mode"}},{"before":"46ca96755205dc5e411ca5a2e244df3efd24d421","after":"3514955b7da9c3e28f3936a50dc5d6c0af4f1fa1","ref":"refs/heads/main","pushedAt":"2024-09-10T12:29:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"updated setup.py","shortMessageHtmlLink":"updated setup.py"}},{"before":"8f550a3139d7b307c9677067a0bf8e2f83babf32","after":"46ca96755205dc5e411ca5a2e244df3efd24d421","ref":"refs/heads/main","pushedAt":"2024-09-10T11:57:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"converted scoring models and mvn priors to h5","shortMessageHtmlLink":"converted scoring models and mvn priors to h5"}},{"before":"df5640b21a2a81cf2d9a4cc9ec1d283f3bfaef2c","after":"8f550a3139d7b307c9677067a0bf8e2f83babf32","ref":"refs/heads/main","pushedAt":"2024-09-10T09:02:25.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"reverted change of default evolutionary distance, less accurate when using LLM","shortMessageHtmlLink":"reverted change of default evolutionary distance, less accurate when …"}},{"before":"2ad72e42d6e67bdb830b1f2ea539e95c4265a4e8","after":"df5640b21a2a81cf2d9a4cc9ec1d283f3bfaef2c","ref":"refs/heads/main","pushedAt":"2024-08-16T11:31:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fixed model loading/saving with pLM enabled","shortMessageHtmlLink":"fixed model loading/saving with pLM enabled"}},{"before":"c584b98db5810b6a9bcd76d852c243599456d6d5","after":"2ad72e42d6e67bdb830b1f2ea539e95c4265a4e8","ref":"refs/heads/main","pushedAt":"2024-08-14T13:50:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added flag for model saving and loading","shortMessageHtmlLink":"added flag for model saving and loading"}},{"before":"5e7999cc5ea4e88f91011fd99ead06b806202e76","after":"c584b98db5810b6a9bcd76d852c243599456d6d5","ref":"refs/heads/main","pushedAt":"2024-08-14T13:07:14.000Z","pushType":"push","commitsCount":37,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fully implemented support for different output formats","shortMessageHtmlLink":"fully implemented support for different output formats"}},{"before":"df9d0a502fa8d79ff37a7d76c3eaa452292ebd03","after":"5e7999cc5ea4e88f91011fd99ead06b806202e76","ref":"refs/heads/main","pushedAt":"2024-08-06T12:33:44.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added verbosity to Viterbi fixes and fixed a bug","shortMessageHtmlLink":"added verbosity to Viterbi fixes and fixed a bug"}},{"before":"4dc527f542524da8173f5bb7fb04928903f7719d","after":"df9d0a502fa8d79ff37a7d76c3eaa452292ebd03","ref":"refs/heads/main","pushedAt":"2024-07-04T08:02:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added example slurm script and installation instructions on brain cluster","shortMessageHtmlLink":"added example slurm script and installation instructions on brain clu…"}},{"before":"f99fae6eb0884a57feed3179f552cf9dea2c9c05","after":"4dc527f542524da8173f5bb7fb04928903f7719d","ref":"refs/heads/main","pushedAt":"2024-07-03T18:22:49.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fixed compatibility issues with numpy and a wrong resource path","shortMessageHtmlLink":"fixed compatibility issues with numpy and a wrong resource path"}},{"before":"fcde4a1a83003ef5456ae06735d7bddbc4ae5188","after":"5d0a668b43a37ff6b6613152299c1be8e1173024","ref":"refs/heads/parallel","pushedAt":"2024-06-24T11:30:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fixed underflow in parallel posteriior probs","shortMessageHtmlLink":"fixed underflow in parallel posteriior probs"}},{"before":"c97a28d8e10232c0bc3ef8f46ad4fa53d4eeb1df","after":"fcde4a1a83003ef5456ae06735d7bddbc4ae5188","ref":"refs/heads/parallel","pushedAt":"2024-06-13T07:59:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added Viterbi surgery just for ablation eperiments","shortMessageHtmlLink":"added Viterbi surgery just for ablation eperiments"}},{"before":"1d6b12b43138bfa1f2232acecdf30adef46bea0b","after":"c97a28d8e10232c0bc3ef8f46ad4fa53d4eeb1df","ref":"refs/heads/parallel","pushedAt":"2024-05-15T09:45:29.000Z","pushType":"push","commitsCount":18,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Merge branch 'parallel' of https://github.com/Gaius-Augustus/learnMSA into parallel","shortMessageHtmlLink":"Merge branch 'parallel' of <a href=\"https://github.com/Gaius-Augustus/learnMSA\">https://github.com/Gaius-Augustus/learnMSA</a> …"}},{"before":"0c1c2f90c7cb3c938ffb9e438394e6bc91d5c787","after":"1d6b12b43138bfa1f2232acecdf30adef46bea0b","ref":"refs/heads/parallel","pushedAt":"2024-04-10T08:36:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added test for long range parallel Viterbi","shortMessageHtmlLink":"added test for long range parallel Viterbi"}},{"before":"ac7c4b365af2e7ec35b2f6a31c500e5ea9971292","after":"0c1c2f90c7cb3c938ffb9e438394e6bc91d5c787","ref":"refs/heads/parallel","pushedAt":"2024-04-09T17:49:32.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"finished parallel Viterbi","shortMessageHtmlLink":"finished parallel Viterbi"}},{"before":"92fb8cfbaa25eb98babfb40bfcd658c081561c23","after":"ac7c4b365af2e7ec35b2f6a31c500e5ea9971292","ref":"refs/heads/parallel","pushedAt":"2024-04-03T10:59:05.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"fixed some practical issues that occured when applying parallel HMMs","shortMessageHtmlLink":"fixed some practical issues that occured when applying parallel HMMs"}},{"before":"4b4127f9b4638417696b60e3129899eb76c64d29","after":"92fb8cfbaa25eb98babfb40bfcd658c081561c23","ref":"refs/heads/parallel","pushedAt":"2024-03-26T10:10:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"finished parallel implementation of posterior probabilities and tests","shortMessageHtmlLink":"finished parallel implementation of posterior probabilities and tests"}},{"before":"25d6ca8fb3fd18848f7f2cf027836e4d55721465","after":"f99fae6eb0884a57feed3179f552cf9dea2c9c05","ref":"refs/heads/main","pushedAt":"2024-03-25T14:32:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"2141b9192c3b70ff8176af29b6835328e3d07af3","after":"4b4127f9b4638417696b60e3129899eb76c64d29","ref":"refs/heads/parallel","pushedAt":"2024-03-25T14:31:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"implemented backward recursion","shortMessageHtmlLink":"implemented backward recursion"}},{"before":"d1d9fe55c9dec3d0f56400981429859b3bf2cd7a","after":"2141b9192c3b70ff8176af29b6835328e3d07af3","ref":"refs/heads/parallel","pushedAt":"2024-03-25T08:17:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"parallel recursions chunking tracer bullet code","shortMessageHtmlLink":"parallel recursions chunking tracer bullet code"}},{"before":null,"after":"d1d9fe55c9dec3d0f56400981429859b3bf2cd7a","ref":"refs/heads/parallel","pushedAt":"2024-03-20T13:25:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"set up parallel test cases","shortMessageHtmlLink":"set up parallel test cases"}},{"before":"549439f1b1fa17b4f7e92dcebb02c6eb4c8aef6e","after":"25d6ca8fb3fd18848f7f2cf027836e4d55721465","ref":"refs/heads/main","pushedAt":"2024-03-19T09:19:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"e64d9a38ac17f26da9ca089b09ee54700985f26d","after":"549439f1b1fa17b4f7e92dcebb02c6eb4c8aef6e","ref":"refs/heads/main","pushedAt":"2024-03-19T09:18:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added looping gif","shortMessageHtmlLink":"added looping gif"}},{"before":"5f51f83025e9a9e99193371c5f39a7f1be39b9aa","after":"e64d9a38ac17f26da9ca089b09ee54700985f26d","ref":"refs/heads/main","pushedAt":"2024-03-19T09:05:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"5c8c2a9a9dbdcdb19efcd96d60a826e79df75861","after":"5f51f83025e9a9e99193371c5f39a7f1be39b9aa","ref":"refs/heads/main","pushedAt":"2024-03-19T09:01:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b7ea286f8d1dfc6acff037f72aacd954a32743e0","after":"5c8c2a9a9dbdcdb19efcd96d60a826e79df75861","ref":"refs/heads/main","pushedAt":"2024-03-19T09:00:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"1c20f5b063849a8db24d8058380369ae2ca232a5","after":"b7ea286f8d1dfc6acff037f72aacd954a32743e0","ref":"refs/heads/main","pushedAt":"2024-03-06T08:56:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"ad14682f1488103275f16963153330acb88d941b","after":"1c20f5b063849a8db24d8058380369ae2ca232a5","ref":"refs/heads/main","pushedAt":"2024-03-06T08:15:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"added missing dependencies, changed default parameters","shortMessageHtmlLink":"added missing dependencies, changed default parameters"}},{"before":"8fd4784287c5438764199360fdc3ec3f875eb43c","after":"ad14682f1488103275f16963153330acb88d941b","ref":"refs/heads/main","pushedAt":"2024-03-06T07:07:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"felbecker","name":"Felix Becker","path":"/felbecker","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20045290?s=80&v=4"},"commit":{"message":"version bump to 2.0.0 :)","shortMessageHtmlLink":"version bump to 2.0.0 :)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMFQxMzoyMzoxNS4wMDAwMDBazwAAAASyFyv-","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0wNlQwNzowNzoyMi4wMDAwMDBazwAAAAQNoCgn"}},"title":"Activity · Gaius-Augustus/learnMSA"}