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allow subsetting tabular files when starting SV inspector #4691

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alpapan opened this issue Nov 26, 2024 · 2 comments
Closed
2 tasks

allow subsetting tabular files when starting SV inspector #4691

alpapan opened this issue Nov 26, 2024 · 2 comments
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enhancement New feature or request

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@alpapan
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alpapan commented Nov 26, 2024

following on from another feature request,

I haven't fully thought this through but when creating a SV Inspector session, would it be possible to

  • indicate to user that the file they uploaded is above the 30mb limit? currently we get a console error only
    is this limit on a uncompressed or compressed file (i use vcf.bgz) ? perhaps it would help if the limit was on number of rows? (that would require parsing however... but see below)

  • allow the SV inspector screen to subset a file that is over 30mb, for example selecting a single reference scaffold?
    This is might make a bit of sense because the file is already fully fetched when the error occurs but not sure how much effort it would entail.

@alpapan alpapan added the enhancement New feature or request label Nov 26, 2024
@cmdcolin
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as mentioned in #4689 there were a number of improvements that may make this issue unneeded. if it is still troublesome i might recommend splitting into these individual VCF's "outside of jbrowse"

@cmdcolin cmdcolin closed this as not planned Won't fix, can't repro, duplicate, stale Nov 27, 2024
@cmdcolin
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can follow up in #4689..

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