From fcebca71cc1d066654603e1a9accfa6c6d4f764d Mon Sep 17 00:00:00 2001 From: Colin Date: Wed, 31 Jul 2024 15:16:12 +0000 Subject: [PATCH] [update docs] v2.13.1 --- lerna.json | 2 +- packages/app-core/package.json | 4 +- packages/core/package.json | 2 +- packages/embedded-core/package.json | 4 +- packages/product-core/package.json | 4 +- packages/text-indexing/package.json | 2 +- packages/web-core/package.json | 6 +- plugins/alignments/package.json | 2 +- plugins/arc/package.json | 2 +- plugins/authentication/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/comparative-adapters/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/gccontent/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/grid-bookmark/package.json | 2 +- plugins/gtf/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/jobs-management/package.json | 4 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 2 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/text-indexing/package.json | 4 +- plugins/trix/package.json | 2 +- plugins/variants/package.json | 2 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 26 +++---- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 70 +++++++++---------- products/jbrowse-img/package.json | 6 +- .../jbrowse-predefined-sessions/package.json | 2 +- products/jbrowse-react-app/package.json | 66 ++++++++--------- .../package.json | 24 +++---- .../package.json | 40 +++++------ products/jbrowse-web/package.json | 66 ++++++++--------- 46 files changed, 196 insertions(+), 196 deletions(-) diff --git a/lerna.json b/lerna.json index f69b3efd70..f3e6456d67 100644 --- a/lerna.json +++ b/lerna.json @@ -1,5 +1,5 @@ { - "version": "2.13.0", + "version": "2.13.1", "npmClient": "yarn", "$schema": "node_modules/lerna/schemas/lerna-schema.json" } diff --git a/packages/app-core/package.json b/packages/app-core/package.json index bd9dbf8f83..1f8afe0405 100644 --- a/packages/app-core/package.json +++ b/packages/app-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/app-core", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.13.0", + "@jbrowse/product-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/core/package.json b/packages/core/package.json index 10d3436ff8..ef29e52800 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json index d427251fc2..7ea131a0d4 100644 --- a/packages/embedded-core/package.json +++ b/packages/embedded-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/embedded-core", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 code shared between embedded products", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.13.0", + "@jbrowse/product-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/product-core/package.json b/packages/product-core/package.json index 2ec2ebb482..73fd4274a3 100644 --- a/packages/product-core/package.json +++ b/packages/product-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/product-core", - "version": "2.13.0", + "version": "2.13.1", "sideEffects": false, "description": "JBrowse 2 code shared between products but not used by plugins", "keywords": [ @@ -43,7 +43,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.13.0", + "@jbrowse/core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json index bad5c0491b..52ebe75258 100644 --- a/packages/text-indexing/package.json +++ b/packages/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/text-indexing", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 text indexing for desktop", "keywords": [ "jbrowse", diff --git a/packages/web-core/package.json b/packages/web-core/package.json index 13c98c2c3e..8a84c28d4d 100644 --- a/packages/web-core/package.json +++ b/packages/web-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web-core", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 code shared between web-app type products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/app-core": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", + "@jbrowse/app-core": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "clone": "^2.0.0", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index ed180076cb..822a2205e7 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/arc/package.json b/plugins/arc/package.json index 12d265cf82..175e4e0820 100644 --- a/plugins/arc/package.json +++ b/plugins/arc/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-arc", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 arc adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json index c6262c31a1..5eeff46998 100644 --- a/plugins/authentication/package.json +++ b/plugins/authentication/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-authentication", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 Authentication", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index 066c405095..036a5dc77c 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index b14d9be168..54b9745fdc 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index bdf91dd052..9d9e8982af 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json index 91e9f7944c..b5256879e4 100644 --- a/plugins/comparative-adapters/package.json +++ b/plugins/comparative-adapters/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-comparative-adapters", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 comparative adapters", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index ae1d5370d9..baed485b71 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index 1313d6bb5e..aae1cdede2 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index 198149a246..2bf1c62d9d 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json index 93de514e2b..3eaba2baeb 100644 --- a/plugins/gccontent/package.json +++ b/plugins/gccontent/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gccontent", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 gccontent concepts", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index e7d7ce9916..35ce3326f7 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json index e5de6adfe1..b0b0e3b609 100644 --- a/plugins/grid-bookmark/package.json +++ b/plugins/grid-bookmark/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-grid-bookmark", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 grid bookmark widget", "keywords": [ "jbrowse", diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json index 2df4168ebc..8166442750 100644 --- a/plugins/gtf/package.json +++ b/plugins/gtf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gtf", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 gtf feature adapter", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index 1d2dca3adf..f1443f12d7 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json index 0c4985e393..9ee253e443 100644 --- a/plugins/jobs-management/package.json +++ b/plugins/jobs-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-jobs-management", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 jobs management", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.13.0", + "@jbrowse/text-indexing": "^2.13.1", "@mui/icons-material": "^5.0.0" }, "peerDependencies": { diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index dfc3e2525a..7a1f4c6f3f 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index ab721c7a92..13e9ed94b5 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index bbe09a23bf..4e17197b70 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index c612caaa87..3602a31f97 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index 1dcee7ccc8..62d7688644 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 42219f96be..4a07a1b517 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index c5c03905f8..26ab32f5b0 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index 3fc616a5b7..a24b2a9145 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/vcf": "^5.0.9", - "@jbrowse/plugin-variants": "^2.13.0", + "@jbrowse/plugin-variants": "^2.13.1", "@mui/icons-material": "^5.0.1", "csvtojson": "^2.0.10" }, diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index f1159bd45b..2a9b6128de 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index ee82c6c091..df5fcf78b4 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json index c338109d89..5023a7c279 100644 --- a/plugins/text-indexing/package.json +++ b/plugins/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-text-indexing", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 text indexing rpc method", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.13.0" + "@jbrowse/text-indexing": "^2.13.1" }, "peerDependencies": { "@jbrowse/core": "^2.0.0", diff --git a/plugins/trix/package.json b/plugins/trix/package.json index 320b778d14..04f3207e72 100644 --- a/plugins/trix/package.json +++ b/plugins/trix/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trix", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 trix text search adapter", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index 5a6e5c52a2..b66333506a 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index a511463ebe..3fcb277c04 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index 625e97261e..5ccdaa5b66 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -205,7 +205,7 @@ EXAMPLES ``` _See code: -[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/add-assembly.ts)_ +[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -256,7 +256,7 @@ EXAMPLES ``` _See code: -[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/add-connection.ts)_ +[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -337,7 +337,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/add-track.ts)_ +[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -367,7 +367,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/add-track-json.ts)_ +[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -399,7 +399,7 @@ EXAMPLES ``` _See code: -[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/admin-server.ts)_ +[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -456,7 +456,7 @@ EXAMPLES ``` _See code: -[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/create.ts)_ +[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMAND]` @@ -477,7 +477,7 @@ DESCRIPTION ``` _See code: -[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.6/src/commands/help.ts)_ +[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.7/src/commands/help.ts)_ ## `jbrowse make-pif FILE` @@ -507,7 +507,7 @@ EXAMPLES ``` _See code: -[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/make-pif.ts)_ +[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/make-pif.ts)_ ## `jbrowse remove-track TRACK` @@ -535,7 +535,7 @@ EXAMPLES ``` _See code: -[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/remove-track.ts)_ +[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/remove-track.ts)_ ## `jbrowse set-default-session` @@ -577,7 +577,7 @@ EXAMPLES ``` _See code: -[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/set-default-session.ts)_ +[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse sort-gff FILE` @@ -608,7 +608,7 @@ EXAMPLES ``` _See code: -[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/sort-gff.ts)_ +[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/sort-gff.ts)_ ## `jbrowse text-index` @@ -675,7 +675,7 @@ EXAMPLES ``` _See code: -[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/text-index.ts)_ +[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/text-index.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -738,7 +738,7 @@ EXAMPLES ``` _See code: -[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.0/products/jbrowse-cli/src/commands/upgrade.ts)_ +[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.13.1/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index 48610b8537..1aff8c2018 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "2.13.0", + "version": "2.13.1", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index de7a0444bc..de1295ebad 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "Apache-2.0", "homepage": "./", @@ -42,40 +42,40 @@ "@emotion/react": "^11.9.0", "@fontsource/roboto": "^5.0.2", "@gmod/faidx": "^1.0.1", - "@jbrowse/app-core": "^2.13.0", - "@jbrowse/core": "^2.13.0", - "@jbrowse/plugin-alignments": "^2.13.0", - "@jbrowse/plugin-arc": "^2.13.0", - "@jbrowse/plugin-authentication": "^2.13.0", - "@jbrowse/plugin-bed": "^2.13.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.13.0", - "@jbrowse/plugin-circular-view": "^2.13.0", - "@jbrowse/plugin-comparative-adapters": "^2.13.0", - "@jbrowse/plugin-config": "^2.13.0", - "@jbrowse/plugin-data-management": "^2.13.0", - "@jbrowse/plugin-dotplot-view": "^2.13.0", - "@jbrowse/plugin-gccontent": "^2.13.0", - "@jbrowse/plugin-gff3": "^2.13.0", - "@jbrowse/plugin-grid-bookmark": "^2.13.0", - "@jbrowse/plugin-gtf": "^2.13.0", - "@jbrowse/plugin-hic": "^2.13.0", - "@jbrowse/plugin-jobs-management": "^2.13.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.13.0", - "@jbrowse/plugin-linear-comparative-view": "^2.13.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/plugin-lollipop": "^2.13.0", - "@jbrowse/plugin-menus": "^2.13.0", - "@jbrowse/plugin-rdf": "^2.13.0", - "@jbrowse/plugin-sequence": "^2.13.0", - "@jbrowse/plugin-spreadsheet-view": "^2.13.0", - "@jbrowse/plugin-sv-inspector": "^2.13.0", - "@jbrowse/plugin-svg": "^2.13.0", - "@jbrowse/plugin-text-indexing": "^2.13.0", - "@jbrowse/plugin-trix": "^2.13.0", - "@jbrowse/plugin-variants": "^2.13.0", - "@jbrowse/plugin-wiggle": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", - "@jbrowse/text-indexing": "^2.13.0", + "@jbrowse/app-core": "^2.13.1", + "@jbrowse/core": "^2.13.1", + "@jbrowse/plugin-alignments": "^2.13.1", + "@jbrowse/plugin-arc": "^2.13.1", + "@jbrowse/plugin-authentication": "^2.13.1", + "@jbrowse/plugin-bed": "^2.13.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.13.1", + "@jbrowse/plugin-circular-view": "^2.13.1", + "@jbrowse/plugin-comparative-adapters": "^2.13.1", + "@jbrowse/plugin-config": "^2.13.1", + "@jbrowse/plugin-data-management": "^2.13.1", + "@jbrowse/plugin-dotplot-view": "^2.13.1", + "@jbrowse/plugin-gccontent": "^2.13.1", + "@jbrowse/plugin-gff3": "^2.13.1", + "@jbrowse/plugin-grid-bookmark": "^2.13.1", + "@jbrowse/plugin-gtf": "^2.13.1", + "@jbrowse/plugin-hic": "^2.13.1", + "@jbrowse/plugin-jobs-management": "^2.13.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.13.1", + "@jbrowse/plugin-linear-comparative-view": "^2.13.1", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/plugin-lollipop": "^2.13.1", + "@jbrowse/plugin-menus": "^2.13.1", + "@jbrowse/plugin-rdf": "^2.13.1", + "@jbrowse/plugin-sequence": "^2.13.1", + "@jbrowse/plugin-spreadsheet-view": "^2.13.1", + "@jbrowse/plugin-sv-inspector": "^2.13.1", + "@jbrowse/plugin-svg": "^2.13.1", + "@jbrowse/plugin-text-indexing": "^2.13.1", + "@jbrowse/plugin-trix": "^2.13.1", + "@jbrowse/plugin-variants": "^2.13.1", + "@jbrowse/plugin-wiggle": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", + "@jbrowse/text-indexing": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^7.0.0", diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json index aff58e758d..5b8b135e58 100644 --- a/products/jbrowse-img/package.json +++ b/products/jbrowse-img/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/img", - "version": "2.13.0", + "version": "2.13.1", "main": "dist/index.js", "module": "esm/index.js", "author": "JBrowse Team", @@ -27,8 +27,8 @@ "@babel/runtime": "^7.17.9", "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/react-linear-genome-view": "^2.13.0", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/react-linear-genome-view": "^2.13.1", "canvas": "^2.9.1", "jsdom": "^24.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-predefined-sessions/package.json b/products/jbrowse-predefined-sessions/package.json index a4ab0860f6..27dc3845b7 100644 --- a/products/jbrowse-predefined-sessions/package.json +++ b/products/jbrowse-predefined-sessions/package.json @@ -1,6 +1,6 @@ { "name": "jbrowse-predefined-sessions", - "version": "2.13.0", + "version": "2.13.1", "main": "index.js", "author": "JBrowse Team", "license": "MIT", diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json index 529322da84..8f197a0402 100644 --- a/products/jbrowse-react-app/package.json +++ b/products/jbrowse-react-app/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-app", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 app React component", "keywords": [ "jbrowse", @@ -48,38 +48,38 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/app-core": "^2.13.0", - "@jbrowse/core": "^2.13.0", - "@jbrowse/plugin-alignments": "^2.13.0", - "@jbrowse/plugin-arc": "^2.13.0", - "@jbrowse/plugin-authentication": "^2.13.0", - "@jbrowse/plugin-bed": "^2.13.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.13.0", - "@jbrowse/plugin-circular-view": "^2.13.0", - "@jbrowse/plugin-comparative-adapters": "^2.13.0", - "@jbrowse/plugin-config": "^2.13.0", - "@jbrowse/plugin-data-management": "^2.13.0", - "@jbrowse/plugin-dotplot-view": "^2.13.0", - "@jbrowse/plugin-gccontent": "^2.13.0", - "@jbrowse/plugin-gff3": "^2.13.0", - "@jbrowse/plugin-grid-bookmark": "^2.13.0", - "@jbrowse/plugin-gtf": "^2.13.0", - "@jbrowse/plugin-hic": "^2.13.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.13.0", - "@jbrowse/plugin-linear-comparative-view": "^2.13.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/plugin-lollipop": "^2.13.0", - "@jbrowse/plugin-menus": "^2.13.0", - "@jbrowse/plugin-rdf": "^2.13.0", - "@jbrowse/plugin-sequence": "^2.13.0", - "@jbrowse/plugin-spreadsheet-view": "^2.13.0", - "@jbrowse/plugin-sv-inspector": "^2.13.0", - "@jbrowse/plugin-svg": "^2.13.0", - "@jbrowse/plugin-trix": "^2.13.0", - "@jbrowse/plugin-variants": "^2.13.0", - "@jbrowse/plugin-wiggle": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", - "@jbrowse/web-core": "^2.13.0", + "@jbrowse/app-core": "^2.13.1", + "@jbrowse/core": "^2.13.1", + "@jbrowse/plugin-alignments": "^2.13.1", + "@jbrowse/plugin-arc": "^2.13.1", + "@jbrowse/plugin-authentication": "^2.13.1", + "@jbrowse/plugin-bed": "^2.13.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.13.1", + "@jbrowse/plugin-circular-view": "^2.13.1", + "@jbrowse/plugin-comparative-adapters": "^2.13.1", + "@jbrowse/plugin-config": "^2.13.1", + "@jbrowse/plugin-data-management": "^2.13.1", + "@jbrowse/plugin-dotplot-view": "^2.13.1", + "@jbrowse/plugin-gccontent": "^2.13.1", + "@jbrowse/plugin-gff3": "^2.13.1", + "@jbrowse/plugin-grid-bookmark": "^2.13.1", + "@jbrowse/plugin-gtf": "^2.13.1", + "@jbrowse/plugin-hic": "^2.13.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.13.1", + "@jbrowse/plugin-linear-comparative-view": "^2.13.1", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/plugin-lollipop": "^2.13.1", + "@jbrowse/plugin-menus": "^2.13.1", + "@jbrowse/plugin-rdf": "^2.13.1", + "@jbrowse/plugin-sequence": "^2.13.1", + "@jbrowse/plugin-spreadsheet-view": "^2.13.1", + "@jbrowse/plugin-sv-inspector": "^2.13.1", + "@jbrowse/plugin-svg": "^2.13.1", + "@jbrowse/plugin-trix": "^2.13.1", + "@jbrowse/plugin-variants": "^2.13.1", + "@jbrowse/plugin-wiggle": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", + "@jbrowse/web-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "base64-js": "^1.0.0", diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json index d16da06063..fae72e09d8 100644 --- a/products/jbrowse-react-circular-genome-view/package.json +++ b/products/jbrowse-react-circular-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-circular-genome-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 circular genome view React component", "keywords": [ "jbrowse", @@ -41,17 +41,17 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.13.0", - "@jbrowse/embedded-core": "^2.13.0", - "@jbrowse/plugin-authentication": "^2.13.0", - "@jbrowse/plugin-circular-view": "^2.13.0", - "@jbrowse/plugin-config": "^2.13.0", - "@jbrowse/plugin-data-management": "^2.13.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/plugin-sequence": "^2.13.0", - "@jbrowse/plugin-variants": "^2.13.0", - "@jbrowse/plugin-wiggle": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", + "@jbrowse/core": "^2.13.1", + "@jbrowse/embedded-core": "^2.13.1", + "@jbrowse/plugin-authentication": "^2.13.1", + "@jbrowse/plugin-circular-view": "^2.13.1", + "@jbrowse/plugin-config": "^2.13.1", + "@jbrowse/plugin-data-management": "^2.13.1", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/plugin-sequence": "^2.13.1", + "@jbrowse/plugin-variants": "^2.13.1", + "@jbrowse/plugin-wiggle": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "mobx": "^6.6.0", diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json index a3cd9f0fc9..a6f6f79a1e 100644 --- a/products/jbrowse-react-linear-genome-view/package.json +++ b/products/jbrowse-react-linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-linear-genome-view", - "version": "2.13.0", + "version": "2.13.1", "description": "JBrowse 2 linear genome view React component", "keywords": [ "jbrowse", @@ -48,25 +48,25 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.13.0", - "@jbrowse/embedded-core": "^2.13.0", - "@jbrowse/plugin-alignments": "^2.13.0", - "@jbrowse/plugin-arc": "^2.13.0", - "@jbrowse/plugin-authentication": "^2.13.0", - "@jbrowse/plugin-bed": "^2.13.0", - "@jbrowse/plugin-circular-view": "^2.13.0", - "@jbrowse/plugin-config": "^2.13.0", - "@jbrowse/plugin-data-management": "^2.13.0", - "@jbrowse/plugin-gccontent": "^2.13.0", - "@jbrowse/plugin-gff3": "^2.13.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.13.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/plugin-sequence": "^2.13.0", - "@jbrowse/plugin-svg": "^2.13.0", - "@jbrowse/plugin-trix": "^2.13.0", - "@jbrowse/plugin-variants": "^2.13.0", - "@jbrowse/plugin-wiggle": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", + "@jbrowse/core": "^2.13.1", + "@jbrowse/embedded-core": "^2.13.1", + "@jbrowse/plugin-alignments": "^2.13.1", + "@jbrowse/plugin-arc": "^2.13.1", + "@jbrowse/plugin-authentication": "^2.13.1", + "@jbrowse/plugin-bed": "^2.13.1", + "@jbrowse/plugin-circular-view": "^2.13.1", + "@jbrowse/plugin-config": "^2.13.1", + "@jbrowse/plugin-data-management": "^2.13.1", + "@jbrowse/plugin-gccontent": "^2.13.1", + "@jbrowse/plugin-gff3": "^2.13.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.13.1", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/plugin-sequence": "^2.13.1", + "@jbrowse/plugin-svg": "^2.13.1", + "@jbrowse/plugin-trix": "^2.13.1", + "@jbrowse/plugin-variants": "^2.13.1", + "@jbrowse/plugin-wiggle": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "mobx": "^6.6.0", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index d39c03df3e..f23638f546 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "2.13.0", + "version": "2.13.1", "license": "Apache-2.0", "homepage": ".", "main": "build", @@ -15,38 +15,38 @@ }, "dependencies": { "@fontsource/roboto": "^5.0.2", - "@jbrowse/app-core": "^2.13.0", - "@jbrowse/core": "^2.13.0", - "@jbrowse/plugin-alignments": "^2.13.0", - "@jbrowse/plugin-arc": "^2.13.0", - "@jbrowse/plugin-authentication": "^2.13.0", - "@jbrowse/plugin-bed": "^2.13.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.13.0", - "@jbrowse/plugin-circular-view": "^2.13.0", - "@jbrowse/plugin-comparative-adapters": "^2.13.0", - "@jbrowse/plugin-config": "^2.13.0", - "@jbrowse/plugin-data-management": "^2.13.0", - "@jbrowse/plugin-dotplot-view": "^2.13.0", - "@jbrowse/plugin-gccontent": "^2.13.0", - "@jbrowse/plugin-gff3": "^2.13.0", - "@jbrowse/plugin-grid-bookmark": "^2.13.0", - "@jbrowse/plugin-gtf": "^2.13.0", - "@jbrowse/plugin-hic": "^2.13.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.13.0", - "@jbrowse/plugin-linear-comparative-view": "^2.13.0", - "@jbrowse/plugin-linear-genome-view": "^2.13.0", - "@jbrowse/plugin-lollipop": "^2.13.0", - "@jbrowse/plugin-menus": "^2.13.0", - "@jbrowse/plugin-rdf": "^2.13.0", - "@jbrowse/plugin-sequence": "^2.13.0", - "@jbrowse/plugin-spreadsheet-view": "^2.13.0", - "@jbrowse/plugin-sv-inspector": "^2.13.0", - "@jbrowse/plugin-svg": "^2.13.0", - "@jbrowse/plugin-trix": "^2.13.0", - "@jbrowse/plugin-variants": "^2.13.0", - "@jbrowse/plugin-wiggle": "^2.13.0", - "@jbrowse/product-core": "^2.13.0", - "@jbrowse/web-core": "^2.13.0", + "@jbrowse/app-core": "^2.13.1", + "@jbrowse/core": "^2.13.1", + "@jbrowse/plugin-alignments": "^2.13.1", + "@jbrowse/plugin-arc": "^2.13.1", + "@jbrowse/plugin-authentication": "^2.13.1", + "@jbrowse/plugin-bed": "^2.13.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.13.1", + "@jbrowse/plugin-circular-view": "^2.13.1", + "@jbrowse/plugin-comparative-adapters": "^2.13.1", + "@jbrowse/plugin-config": "^2.13.1", + "@jbrowse/plugin-data-management": "^2.13.1", + "@jbrowse/plugin-dotplot-view": "^2.13.1", + "@jbrowse/plugin-gccontent": "^2.13.1", + "@jbrowse/plugin-gff3": "^2.13.1", + "@jbrowse/plugin-grid-bookmark": "^2.13.1", + "@jbrowse/plugin-gtf": "^2.13.1", + "@jbrowse/plugin-hic": "^2.13.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.13.1", + "@jbrowse/plugin-linear-comparative-view": "^2.13.1", + "@jbrowse/plugin-linear-genome-view": "^2.13.1", + "@jbrowse/plugin-lollipop": "^2.13.1", + "@jbrowse/plugin-menus": "^2.13.1", + "@jbrowse/plugin-rdf": "^2.13.1", + "@jbrowse/plugin-sequence": "^2.13.1", + "@jbrowse/plugin-spreadsheet-view": "^2.13.1", + "@jbrowse/plugin-sv-inspector": "^2.13.1", + "@jbrowse/plugin-svg": "^2.13.1", + "@jbrowse/plugin-trix": "^2.13.1", + "@jbrowse/plugin-variants": "^2.13.1", + "@jbrowse/plugin-wiggle": "^2.13.1", + "@jbrowse/product-core": "^2.13.1", + "@jbrowse/web-core": "^2.13.1", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^7.0.0",