From e2249479bf1d76fe730e7765f634036f70a7911e Mon Sep 17 00:00:00 2001 From: Garrett Stevens Date: Tue, 13 Oct 2020 15:51:58 -0600 Subject: [PATCH] Publish - @jbrowse/core@0.0.1-beta.23 - @jbrowse/development-tools@0.0.1-beta.28 - @jbrowse/plugin-alignments@0.0.1-beta.19 - @jbrowse/plugin-bed@0.0.1-beta.13 - @jbrowse/plugin-breakpoint-split-view@0.0.1-beta.15 - @jbrowse/plugin-circular-view@0.0.1-beta.15 - @jbrowse/plugin-config@0.0.1-beta.15 - @jbrowse/plugin-data-management@0.0.1-beta.15 - @jbrowse/plugin-dotplot-view@0.0.1-beta.15 - @jbrowse/plugin-filtering@0.0.1-beta.13 - @jbrowse/plugin-gff3@0.0.1-beta.15 - @jbrowse/plugin-hic@0.0.1-beta.13 - @jbrowse/plugin-legacy-jbrowse@0.0.1-beta.13 - @jbrowse/plugin-linear-comparative-view@0.0.1-beta.15 - @jbrowse/plugin-linear-genome-view@0.0.1-beta.16 - @jbrowse/plugin-lollipop@0.0.1-beta.13 - @jbrowse/plugin-menus@0.0.1-beta.14 - @jbrowse/plugin-protein@0.0.1-beta.13 - @jbrowse/plugin-rdf@0.0.1-beta.13 - @jbrowse/plugin-sequence@0.0.1-beta.14 - @jbrowse/plugin-spreadsheet-view@0.0.1-beta.19 - @jbrowse/plugin-sv-inspector@0.0.1-beta.14 - @jbrowse/plugin-svg@0.0.1-beta.14 - @jbrowse/plugin-trackhub-registry@0.0.1-beta.13 - @jbrowse/plugin-variants@0.0.1-beta.19 - @jbrowse/plugin-wiggle@0.0.1-beta.14 - @jbrowse/cli@0.0.1-beta.24 - @jbrowse/desktop@0.0.1-beta.25 - @jbrowse/protein-widget@0.0.1-beta.21 - @jbrowse/web@0.0.1-beta.26 - @jbrowse/website@0.0.1-beta.16 --- packages/core/CHANGELOG.md | 9 ++++ packages/core/package.json | 2 +- packages/development-tools/CHANGELOG.md | 9 ++++ packages/development-tools/package.json | 4 +- plugins/alignments/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/filtering/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/protein/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 4 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/trackhub-registry/package.json | 2 +- plugins/variants/package.json | 2 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 16 +++---- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 46 +++++++++--------- products/jbrowse-protein-widget/package.json | 18 +++---- products/jbrowse-web/package.json | 50 ++++++++++---------- products/website/package.json | 2 +- 34 files changed, 114 insertions(+), 96 deletions(-) diff --git a/packages/core/CHANGELOG.md b/packages/core/CHANGELOG.md index 798003a423..effee4050c 100644 --- a/packages/core/CHANGELOG.md +++ b/packages/core/CHANGELOG.md @@ -1,3 +1,12 @@ +## [0.0.1-beta.23](https://github.com/GMOD/jbrowse-components/compare/v0.0.1-beta.11...v0.0.1-beta.23) (2020-10-13) + +### Reverts + +- Revert "Bump @docusaurus alpha version" ([32b604a](https://github.com/GMOD/jbrowse-components/commit/32b604a1ef829f2d2e17fa3822184577ea951e69)) +- Revert "Remove checkLocation from CLI base class" ([d399135](https://github.com/GMOD/jbrowse-components/commit/d399135e364d3553130c919bdfccbf17e14d6a9b)) +- Revert "Allow touchscreen using pointer events (#1112)" the pointer ([404546e](https://github.com/GMOD/jbrowse-components/commit/404546e5a1c71510a90a777957d32cd2c8f71ed1)), closes [#1112](https://github.com/GMOD/jbrowse-components/issues/1112) +- Revert "Simplify command unzip (#1075)" ([9c0b975](https://github.com/GMOD/jbrowse-components/commit/9c0b97504b7a423a9c356ac3ffffc2754224c65a)), closes [#1075](https://github.com/GMOD/jbrowse-components/issues/1075) + ## [0.0.1-beta.22](https://github.com/GMOD/jbrowse-components/compare/v0.0.1-beta.14...v0.0.1-beta.22) (2020-09-13) ### Reverts diff --git a/packages/core/package.json b/packages/core/package.json index 276becba6c..c0eb81884b 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "0.0.1-beta.22", + "version": "0.0.1-beta.23", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/development-tools/CHANGELOG.md b/packages/development-tools/CHANGELOG.md index ebef994a55..09cbc327b8 100644 --- a/packages/development-tools/CHANGELOG.md +++ b/packages/development-tools/CHANGELOG.md @@ -1,3 +1,12 @@ +## [0.0.1-beta.28](https://github.com/GMOD/jbrowse-components/compare/v0.0.1-beta.11...v0.0.1-beta.28) (2020-10-13) + +### Reverts + +- Revert "Bump @docusaurus alpha version" ([32b604a](https://github.com/GMOD/jbrowse-components/commit/32b604a1ef829f2d2e17fa3822184577ea951e69)) +- Revert "Remove checkLocation from CLI base class" ([d399135](https://github.com/GMOD/jbrowse-components/commit/d399135e364d3553130c919bdfccbf17e14d6a9b)) +- Revert "Allow touchscreen using pointer events (#1112)" the pointer ([404546e](https://github.com/GMOD/jbrowse-components/commit/404546e5a1c71510a90a777957d32cd2c8f71ed1)), closes [#1112](https://github.com/GMOD/jbrowse-components/issues/1112) +- Revert "Simplify command unzip (#1075)" ([9c0b975](https://github.com/GMOD/jbrowse-components/commit/9c0b97504b7a423a9c356ac3ffffc2754224c65a)), closes [#1075](https://github.com/GMOD/jbrowse-components/issues/1075) + ## [0.0.1-beta.27](https://github.com/GMOD/jbrowse-components/compare/v0.0.1-beta.14...v0.0.1-beta.27) (2020-09-13) ### Reverts diff --git a/packages/development-tools/package.json b/packages/development-tools/package.json index 731ce400e1..134ab44665 100644 --- a/packages/development-tools/package.json +++ b/packages/development-tools/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/development-tools", - "version": "0.0.1-beta.27", + "version": "0.0.1-beta.28", "description": "Tools to help with developing and building JBrowse 2 plugins", "keywords": [ "jbrowse", @@ -31,7 +31,7 @@ "postpublish": "git push origin master --follow-tags" }, "dependencies": { - "@jbrowse/core": "^0.0.1-beta.22", + "@jbrowse/core": "^0.0.1-beta.23", "@types/copy-webpack-plugin": "^6.0.0", "@types/webpack": "^4.41.18", "change-case": "^4.1.1", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index c41cfe230a..b867a08734 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "0.0.1-beta.18", + "version": "0.0.1-beta.19", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index 3abfb4aad3..30fa6ac08a 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index a8f9fa2fac..08891f20a2 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index aeef0ac807..1f9677c4f6 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index 2050649f67..62cd5cb9a0 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index 9f9f81d5cb..cd583acd62 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index cc72d3dbe6..1981aba8e4 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/filtering/package.json b/plugins/filtering/package.json index e6abd71faf..76e1bc59f5 100644 --- a/plugins/filtering/package.json +++ b/plugins/filtering/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-filtering", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 filtering tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index a2ef97ef7e..560486a0a8 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index 09190a114d..b169c35882 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index 579995f9c7..880172124a 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index 429838cde4..217826c450 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "0.0.1-beta.14", + "version": "0.0.1-beta.15", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index dc2d5618ce..1ef183c982 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "0.0.1-beta.15", + "version": "0.0.1-beta.16", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index 09ea0c2634..68e37e7cf4 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index 012a2db27c..2fd244c028 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "0.0.1-beta.13", + "version": "0.0.1-beta.14", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/protein/package.json b/plugins/protein/package.json index ec54085ad7..9b6efee1e5 100644 --- a/plugins/protein/package.json +++ b/plugins/protein/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-protein", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 protein-specific renderers, etc.", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 5a8dc6ab74..bb905af920 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index 55c7748d6e..a4736b7016 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "0.0.1-beta.13", + "version": "0.0.1-beta.14", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", @@ -37,8 +37,8 @@ "dependencies": { "@gmod/indexedfasta": "^1.0.13", "@gmod/twobit": "^1.1.10", - "clsx": "^1.1.0", "abortable-promise-cache": "^1.3.0", + "clsx": "^1.1.0", "generic-filehandle": "^2.0.1" }, "peerDependencies": { diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index d27ca2d5dc..2d38b0e60d 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "0.0.1-beta.18", + "version": "0.0.1-beta.19", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -35,8 +35,8 @@ "useSrc": "node ../../scripts/useSrc.js" }, "dependencies": { - "@jbrowse/plugin-variants": "^0.0.1-beta.18", "@gmod/vcf": "^4.0.0", + "@jbrowse/plugin-variants": "^0.0.1-beta.19", "@material-ui/icons": "^4.9.1", "classnames": "^2.2.6", "csvtojson": "^2.0.10" diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index a1131c5f0e..6aa19c6668 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "0.0.1-beta.13", + "version": "0.0.1-beta.14", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index 617f5891e2..311a5c71ce 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "0.0.1-beta.13", + "version": "0.0.1-beta.14", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/trackhub-registry/package.json b/plugins/trackhub-registry/package.json index b780bbdf1d..a5ccab6435 100644 --- a/plugins/trackhub-registry/package.json +++ b/plugins/trackhub-registry/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trackhub-registry", - "version": "0.0.1-beta.12", + "version": "0.0.1-beta.13", "description": "Add a connection to The Track Hub Registry", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index 0472230566..f5c41ecd00 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "0.0.1-beta.18", + "version": "0.0.1-beta.19", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index 2aeda935c8..225ab068da 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "0.0.1-beta.13", + "version": "0.0.1-beta.14", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index 25447a6fc6..4c510068ec 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -130,7 +130,7 @@ EXAMPLES $ jbrowse add-assembly GRCh38.fa --target /path/to/jb2/installation/customconfig.json --load copy ``` -_See code: [src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/add-assembly.ts)_ +_See code: [src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -183,7 +183,7 @@ EXAMPLES /path/to/jb2/installation/config.json ``` -_See code: [src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/add-connection.ts)_ +_See code: [src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -239,7 +239,7 @@ EXAMPLES $ jbrowse add-track /path/to/my.bam --config '{"defaultRendering": "density"}' ``` -_See code: [src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/add-track.ts)_ +_See code: [src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -263,7 +263,7 @@ EXAMPLES $ jbrowse add-track-json track.json --update ``` -_See code: [src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/add-track-json.ts)_ +_See code: [src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -289,7 +289,7 @@ EXAMPLES $ jbrowse admin-server -p 8888 ``` -_See code: [src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/admin-server.ts)_ +_See code: [src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -320,7 +320,7 @@ EXAMPLES $ jbrowse create --listVersions # Lists out all available versions of JBrowse 2 ``` -_See code: [src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/create.ts)_ +_See code: [src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMAND]` @@ -370,7 +370,7 @@ EXAMPLES $ jbrowse set-default-session --currentSession # Prints out current default session ``` -_See code: [src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/set-default-session.ts)_ +_See code: [src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -400,7 +400,7 @@ EXAMPLES $ jbrowse upgrade --url https://sample.com/jbrowse2.zip ``` -_See code: [src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.23/products/jbrowse-cli/src/commands/upgrade.ts)_ +_See code: [src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/%40jbrowse%2Fcli%400.0.1-beta.24/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index 29c8b6f607..4a0253d944 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "0.0.1-beta.23", + "version": "0.0.1-beta.24", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index 1cc459b5f1..1200647e4b 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "0.0.1-beta.24", + "version": "0.0.1-beta.25", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "MIT", "homepage": "./", @@ -36,28 +36,28 @@ "build-electron-only-unpacked:linux": "electron-builder build -l --dir" }, "dependencies": { - "@jbrowse/core": "^0.0.1-beta.22", - "@jbrowse/plugin-alignments": "^0.0.1-beta.18", - "@jbrowse/plugin-bed": "^0.0.1-beta.12", - "@jbrowse/plugin-circular-view": "^0.0.1-beta.14", - "@jbrowse/plugin-config": "^0.0.1-beta.14", - "@jbrowse/plugin-data-management": "^0.0.1-beta.14", - "@jbrowse/plugin-dotplot-view": "^0.0.1-beta.14", - "@jbrowse/plugin-filtering": "^0.0.1-beta.12", - "@jbrowse/plugin-gff3": "^0.0.1-beta.13", - "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.12", - "@jbrowse/plugin-linear-comparative-view": "^0.0.1-beta.14", - "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.15", - "@jbrowse/plugin-lollipop": "^0.0.1-beta.12", - "@jbrowse/plugin-menus": "^0.0.1-beta.13", - "@jbrowse/plugin-rdf": "^0.0.1-beta.12", - "@jbrowse/plugin-sequence": "^0.0.1-beta.13", - "@jbrowse/plugin-spreadsheet-view": "^0.0.1-beta.18", - "@jbrowse/plugin-sv-inspector": "^0.0.1-beta.13", - "@jbrowse/plugin-svg": "^0.0.1-beta.13", - "@jbrowse/plugin-trackhub-registry": "^0.0.1-beta.12", - "@jbrowse/plugin-variants": "^0.0.1-beta.18", - "@jbrowse/plugin-wiggle": "^0.0.1-beta.13", + "@jbrowse/core": "^0.0.1-beta.23", + "@jbrowse/plugin-alignments": "^0.0.1-beta.19", + "@jbrowse/plugin-bed": "^0.0.1-beta.13", + "@jbrowse/plugin-circular-view": "^0.0.1-beta.15", + "@jbrowse/plugin-config": "^0.0.1-beta.15", + "@jbrowse/plugin-data-management": "^0.0.1-beta.15", + "@jbrowse/plugin-dotplot-view": "^0.0.1-beta.15", + "@jbrowse/plugin-filtering": "^0.0.1-beta.13", + "@jbrowse/plugin-gff3": "^0.0.1-beta.15", + "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.13", + "@jbrowse/plugin-linear-comparative-view": "^0.0.1-beta.15", + "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.16", + "@jbrowse/plugin-lollipop": "^0.0.1-beta.13", + "@jbrowse/plugin-menus": "^0.0.1-beta.14", + "@jbrowse/plugin-rdf": "^0.0.1-beta.13", + "@jbrowse/plugin-sequence": "^0.0.1-beta.14", + "@jbrowse/plugin-spreadsheet-view": "^0.0.1-beta.19", + "@jbrowse/plugin-sv-inspector": "^0.0.1-beta.14", + "@jbrowse/plugin-svg": "^0.0.1-beta.14", + "@jbrowse/plugin-trackhub-registry": "^0.0.1-beta.13", + "@jbrowse/plugin-variants": "^0.0.1-beta.19", + "@jbrowse/plugin-wiggle": "^0.0.1-beta.14", "@librpc/web": "rbuels/librpc-web#737bb9706762a52a87169a12c9b59fb241febab0", "@material-ui/core": "^4.9.5", "@material-ui/icons": "^4.0.0", diff --git a/products/jbrowse-protein-widget/package.json b/products/jbrowse-protein-widget/package.json index c043cb0b1e..27dfbbfbe3 100644 --- a/products/jbrowse-protein-widget/package.json +++ b/products/jbrowse-protein-widget/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/protein-widget", - "version": "0.0.1-beta.20", + "version": "0.0.1-beta.21", "description": "an embeddable protein viewer widget", "license": "MIT", "main": "umd/jbrowse-protein-viewer.js", @@ -15,14 +15,14 @@ }, "dependencies": { "@gmod/gff": "^1.1.2", - "@jbrowse/core": "^0.0.1-beta.22", - "@jbrowse/plugin-config": "^0.0.1-beta.14", - "@jbrowse/plugin-filtering": "^0.0.1-beta.12", - "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.12", - "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.15", - "@jbrowse/plugin-lollipop": "^0.0.1-beta.12", - "@jbrowse/plugin-protein": "^0.0.1-beta.12", - "@jbrowse/plugin-svg": "^0.0.1-beta.13", + "@jbrowse/core": "^0.0.1-beta.23", + "@jbrowse/plugin-config": "^0.0.1-beta.15", + "@jbrowse/plugin-filtering": "^0.0.1-beta.13", + "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.13", + "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.16", + "@jbrowse/plugin-lollipop": "^0.0.1-beta.13", + "@jbrowse/plugin-protein": "^0.0.1-beta.13", + "@jbrowse/plugin-svg": "^0.0.1-beta.14", "@material-ui/core": "^4.9.5", "mobx": "^5.10.1", "mobx-react": "^6.0.0", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index 79cd297eb0..3f0fbc8645 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "0.0.1-beta.25", + "version": "0.0.1-beta.26", "license": "MIT", "homepage": ".", "main": "build", @@ -15,30 +15,30 @@ "lint": "eslint --ext .js,.ts,.jsx,.tsx src" }, "dependencies": { - "@jbrowse/core": "^0.0.1-beta.22", - "@jbrowse/plugin-alignments": "^0.0.1-beta.18", - "@jbrowse/plugin-bed": "^0.0.1-beta.12", - "@jbrowse/plugin-breakpoint-split-view": "^0.0.1-beta.14", - "@jbrowse/plugin-circular-view": "^0.0.1-beta.14", - "@jbrowse/plugin-config": "^0.0.1-beta.14", - "@jbrowse/plugin-data-management": "^0.0.1-beta.14", - "@jbrowse/plugin-dotplot-view": "^0.0.1-beta.14", - "@jbrowse/plugin-filtering": "^0.0.1-beta.12", - "@jbrowse/plugin-gff3": "^0.0.1-beta.13", - "@jbrowse/plugin-hic": "^0.0.1-beta.12", - "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.12", - "@jbrowse/plugin-linear-comparative-view": "^0.0.1-beta.14", - "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.15", - "@jbrowse/plugin-lollipop": "^0.0.1-beta.12", - "@jbrowse/plugin-menus": "^0.0.1-beta.13", - "@jbrowse/plugin-rdf": "^0.0.1-beta.12", - "@jbrowse/plugin-sequence": "^0.0.1-beta.13", - "@jbrowse/plugin-spreadsheet-view": "^0.0.1-beta.18", - "@jbrowse/plugin-sv-inspector": "^0.0.1-beta.13", - "@jbrowse/plugin-svg": "^0.0.1-beta.13", - "@jbrowse/plugin-trackhub-registry": "^0.0.1-beta.12", - "@jbrowse/plugin-variants": "^0.0.1-beta.18", - "@jbrowse/plugin-wiggle": "^0.0.1-beta.13", + "@jbrowse/core": "^0.0.1-beta.23", + "@jbrowse/plugin-alignments": "^0.0.1-beta.19", + "@jbrowse/plugin-bed": "^0.0.1-beta.13", + "@jbrowse/plugin-breakpoint-split-view": "^0.0.1-beta.15", + "@jbrowse/plugin-circular-view": "^0.0.1-beta.15", + "@jbrowse/plugin-config": "^0.0.1-beta.15", + "@jbrowse/plugin-data-management": "^0.0.1-beta.15", + "@jbrowse/plugin-dotplot-view": "^0.0.1-beta.15", + "@jbrowse/plugin-filtering": "^0.0.1-beta.13", + "@jbrowse/plugin-gff3": "^0.0.1-beta.15", + "@jbrowse/plugin-hic": "^0.0.1-beta.13", + "@jbrowse/plugin-legacy-jbrowse": "^0.0.1-beta.13", + "@jbrowse/plugin-linear-comparative-view": "^0.0.1-beta.15", + "@jbrowse/plugin-linear-genome-view": "^0.0.1-beta.16", + "@jbrowse/plugin-lollipop": "^0.0.1-beta.13", + "@jbrowse/plugin-menus": "^0.0.1-beta.14", + "@jbrowse/plugin-rdf": "^0.0.1-beta.13", + "@jbrowse/plugin-sequence": "^0.0.1-beta.14", + "@jbrowse/plugin-spreadsheet-view": "^0.0.1-beta.19", + "@jbrowse/plugin-sv-inspector": "^0.0.1-beta.14", + "@jbrowse/plugin-svg": "^0.0.1-beta.14", + "@jbrowse/plugin-trackhub-registry": "^0.0.1-beta.13", + "@jbrowse/plugin-variants": "^0.0.1-beta.19", + "@jbrowse/plugin-wiggle": "^0.0.1-beta.14", "@librpc/web": "rbuels/librpc-web#737bb9706762a52a87169a12c9b59fb241febab0", "@material-ui/core": "^4.9.5", "@material-ui/icons": "^4.0.0", diff --git a/products/website/package.json b/products/website/package.json index 03e561e0ed..96796bf44f 100644 --- a/products/website/package.json +++ b/products/website/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/website", - "version": "0.0.1-beta.15", + "version": "0.0.1-beta.16", "license": "MIT", "homepage": ".", "scripts": {