From c6a658d2344989895543f0456b1cf7dd3b937769 Mon Sep 17 00:00:00 2001 From: Colin Date: Sun, 3 Nov 2024 15:53:32 +0000 Subject: [PATCH] [update docs] v2.16.1 --- lerna.json | 2 +- packages/app-core/package.json | 4 +- packages/core/package.json | 2 +- packages/embedded-core/package.json | 6 +- packages/product-core/package.json | 4 +- packages/sv-core/package.json | 4 +- packages/text-indexing/package.json | 4 +- packages/web-core/package.json | 6 +- plugins/alignments/package.json | 4 +- plugins/arc/package.json | 2 +- plugins/authentication/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/comparative-adapters/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/gccontent/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/grid-bookmark/package.json | 2 +- plugins/gtf/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/jobs-management/package.json | 4 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 2 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/text-indexing/package.json | 4 +- plugins/trix/package.json | 2 +- plugins/variants/package.json | 4 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 24 +++---- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 70 +++++++++---------- products/jbrowse-img/package.json | 6 +- .../jbrowse-predefined-sessions/package.json | 2 +- products/jbrowse-react-app/package.json | 66 ++++++++--------- .../package.json | 24 +++---- .../package.json | 40 +++++------ products/jbrowse-web/package.json | 66 ++++++++--------- 47 files changed, 201 insertions(+), 201 deletions(-) diff --git a/lerna.json b/lerna.json index bd3fefa861..b03141ea35 100644 --- a/lerna.json +++ b/lerna.json @@ -1,5 +1,5 @@ { - "version": "2.16.0", + "version": "2.16.1", "npmClient": "yarn", "$schema": "node_modules/lerna/schemas/lerna-schema.json" } diff --git a/packages/app-core/package.json b/packages/app-core/package.json index 4a72a8b5ee..cd8ec69f01 100644 --- a/packages/app-core/package.json +++ b/packages/app-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/app-core", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.16.0", + "@jbrowse/product-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1" diff --git a/packages/core/package.json b/packages/core/package.json index f275b9d515..de511578dd 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json index aa0eacb411..f05863e3de 100644 --- a/packages/embedded-core/package.json +++ b/packages/embedded-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/embedded-core", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 code shared between embedded products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", + "@jbrowse/core": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1" diff --git a/packages/product-core/package.json b/packages/product-core/package.json index bd28ed70d9..f5e064740b 100644 --- a/packages/product-core/package.json +++ b/packages/product-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/product-core", - "version": "2.16.0", + "version": "2.16.1", "sideEffects": false, "description": "JBrowse 2 code shared between products but not used by plugins", "keywords": [ @@ -43,7 +43,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.16.0", + "@jbrowse/core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1", diff --git a/packages/sv-core/package.json b/packages/sv-core/package.json index 9b5b9e3723..3f1fd429f9 100644 --- a/packages/sv-core/package.json +++ b/packages/sv-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/sv-core", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 code shared between sv type code", "keywords": [ "jbrowse", @@ -41,7 +41,7 @@ "useSrc": "node ../../scripts/useSrc.js" }, "dependencies": { - "@jbrowse/plugin-linear-genome-view": "^2.16.0", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0" }, diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json index 6524e12898..41c32f0b4a 100644 --- a/packages/text-indexing/package.json +++ b/packages/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/text-indexing", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 text indexing for desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.16.0", + "@jbrowse/core": "^2.16.1", "ixixx": "^2.0.1", "node-fetch": "^2.6.0", "sanitize-filename": "^1.6.3" diff --git a/packages/web-core/package.json b/packages/web-core/package.json index 3a68530040..bb81e8e410 100644 --- a/packages/web-core/package.json +++ b/packages/web-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web-core", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 code shared between web-app type products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/app-core": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", + "@jbrowse/app-core": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "clone": "^2.0.0", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index 7343e0aa39..67f7c6137a 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bam": "^2.0.0", "@gmod/cram": "^3.0.3", - "@jbrowse/sv-core": "^2.16.0", + "@jbrowse/sv-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "canvas2svg": "^1.0.16", "clone": "^2.1.2", diff --git a/plugins/arc/package.json b/plugins/arc/package.json index d68f54a117..6b96604bb0 100644 --- a/plugins/arc/package.json +++ b/plugins/arc/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-arc", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 arc adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json index d47b775933..c016d89a41 100644 --- a/plugins/authentication/package.json +++ b/plugins/authentication/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-authentication", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 Authentication", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index d911ea9413..66446f11f9 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index a047fc0de4..18794f04f8 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index 009255b9d6..f4ef5afd8f 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json index d88b9c0a83..e9ba006a03 100644 --- a/plugins/comparative-adapters/package.json +++ b/plugins/comparative-adapters/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-comparative-adapters", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 comparative adapters", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index 4633fb052d..f1ee5a42e6 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index 8eb89f2183..be3b160ae1 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index 129bc17142..8e6275f149 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json index 3bb59d51af..fefec029a0 100644 --- a/plugins/gccontent/package.json +++ b/plugins/gccontent/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gccontent", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 gccontent concepts", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index 95b01d1120..afe1d349d5 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json index 00a78938ad..3fcd60ee1e 100644 --- a/plugins/grid-bookmark/package.json +++ b/plugins/grid-bookmark/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-grid-bookmark", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 grid bookmark widget", "keywords": [ "jbrowse", diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json index 0672c0efd5..b4dbaab5c1 100644 --- a/plugins/gtf/package.json +++ b/plugins/gtf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gtf", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 gtf feature adapter", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index b541c43ce9..db766ea7f8 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json index 3d0df6378c..9ba007e158 100644 --- a/plugins/jobs-management/package.json +++ b/plugins/jobs-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-jobs-management", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 jobs management", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.16.0", + "@jbrowse/text-indexing": "^2.16.1", "@mui/icons-material": "^6.0.0" }, "peerDependencies": { diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index a4d55b9f61..b7946ad678 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index 0cf9e8aa99..34b768c951 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index ef0a9ad997..54eda6be7c 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index 53f73bbad2..0bb35b16d4 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index b0b32618e6..be5cc9645c 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 974451fd48..895528a1ea 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index 4d6d7d7c5a..d45b51023c 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index 81f035bcc9..06a5925ec5 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/vcf": "^5.0.9", - "@jbrowse/plugin-variants": "^2.16.0", + "@jbrowse/plugin-variants": "^2.16.1", "@mui/icons-material": "^6.0.0", "csvtojson": "^2.0.10" }, diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index 8f81e476e4..0c963ef695 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index 76d773793c..3cafc8320f 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json index f0a53d60e1..290bf96bcb 100644 --- a/plugins/text-indexing/package.json +++ b/plugins/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-text-indexing", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 text indexing rpc method", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.16.0" + "@jbrowse/text-indexing": "^2.16.1" }, "peerDependencies": { "@jbrowse/core": "^2.0.0", diff --git a/plugins/trix/package.json b/plugins/trix/package.json index 30afa8b655..486fc8711c 100644 --- a/plugins/trix/package.json +++ b/plugins/trix/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trix", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 trix text search adapter", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index 95742f1992..9d1e935d76 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", @@ -40,7 +40,7 @@ "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/tabix": "^1.5.6", "@gmod/vcf": "^5.0.9", - "@jbrowse/sv-core": "^2.16.0", + "@jbrowse/sv-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/x-data-grid": "^7.0.0", "generic-filehandle": "^3.0.0" diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index 7d60db90a3..adb51e2e6e 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index 4099ec6906..0e9ed58590 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -205,7 +205,7 @@ EXAMPLES ``` _See code: -[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/add-assembly.ts)_ +[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -256,7 +256,7 @@ EXAMPLES ``` _See code: -[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/add-connection.ts)_ +[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -337,7 +337,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/add-track.ts)_ +[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -367,7 +367,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/add-track-json.ts)_ +[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -399,7 +399,7 @@ EXAMPLES ``` _See code: -[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/admin-server.ts)_ +[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -456,7 +456,7 @@ EXAMPLES ``` _See code: -[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/create.ts)_ +[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMAND]` @@ -507,7 +507,7 @@ EXAMPLES ``` _See code: -[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/make-pif.ts)_ +[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/make-pif.ts)_ ## `jbrowse remove-track TRACK` @@ -535,7 +535,7 @@ EXAMPLES ``` _See code: -[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/remove-track.ts)_ +[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/remove-track.ts)_ ## `jbrowse set-default-session` @@ -577,7 +577,7 @@ EXAMPLES ``` _See code: -[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/set-default-session.ts)_ +[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse sort-gff FILE` @@ -608,7 +608,7 @@ EXAMPLES ``` _See code: -[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/sort-gff.ts)_ +[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/sort-gff.ts)_ ## `jbrowse text-index` @@ -675,7 +675,7 @@ EXAMPLES ``` _See code: -[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/text-index.ts)_ +[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/text-index.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -738,7 +738,7 @@ EXAMPLES ``` _See code: -[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.0/products/jbrowse-cli/src/commands/upgrade.ts)_ +[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.16.1/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index 843e01665e..43b066f762 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "2.16.0", + "version": "2.16.1", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index c0101fe34b..e5fed453ab 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "Apache-2.0", "homepage": "./", @@ -42,40 +42,40 @@ "@emotion/react": "^11.9.0", "@fontsource/roboto": "^5.0.2", "@gmod/faidx": "^1.0.1", - "@jbrowse/app-core": "^2.16.0", - "@jbrowse/core": "^2.16.0", - "@jbrowse/plugin-alignments": "^2.16.0", - "@jbrowse/plugin-arc": "^2.16.0", - "@jbrowse/plugin-authentication": "^2.16.0", - "@jbrowse/plugin-bed": "^2.16.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.16.0", - "@jbrowse/plugin-circular-view": "^2.16.0", - "@jbrowse/plugin-comparative-adapters": "^2.16.0", - "@jbrowse/plugin-config": "^2.16.0", - "@jbrowse/plugin-data-management": "^2.16.0", - "@jbrowse/plugin-dotplot-view": "^2.16.0", - "@jbrowse/plugin-gccontent": "^2.16.0", - "@jbrowse/plugin-gff3": "^2.16.0", - "@jbrowse/plugin-grid-bookmark": "^2.16.0", - "@jbrowse/plugin-gtf": "^2.16.0", - "@jbrowse/plugin-hic": "^2.16.0", - "@jbrowse/plugin-jobs-management": "^2.16.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.16.0", - "@jbrowse/plugin-linear-comparative-view": "^2.16.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/plugin-lollipop": "^2.16.0", - "@jbrowse/plugin-menus": "^2.16.0", - "@jbrowse/plugin-rdf": "^2.16.0", - "@jbrowse/plugin-sequence": "^2.16.0", - "@jbrowse/plugin-spreadsheet-view": "^2.16.0", - "@jbrowse/plugin-sv-inspector": "^2.16.0", - "@jbrowse/plugin-svg": "^2.16.0", - "@jbrowse/plugin-text-indexing": "^2.16.0", - "@jbrowse/plugin-trix": "^2.16.0", - "@jbrowse/plugin-variants": "^2.16.0", - "@jbrowse/plugin-wiggle": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", - "@jbrowse/text-indexing": "^2.16.0", + "@jbrowse/app-core": "^2.16.1", + "@jbrowse/core": "^2.16.1", + "@jbrowse/plugin-alignments": "^2.16.1", + "@jbrowse/plugin-arc": "^2.16.1", + "@jbrowse/plugin-authentication": "^2.16.1", + "@jbrowse/plugin-bed": "^2.16.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.16.1", + "@jbrowse/plugin-circular-view": "^2.16.1", + "@jbrowse/plugin-comparative-adapters": "^2.16.1", + "@jbrowse/plugin-config": "^2.16.1", + "@jbrowse/plugin-data-management": "^2.16.1", + "@jbrowse/plugin-dotplot-view": "^2.16.1", + "@jbrowse/plugin-gccontent": "^2.16.1", + "@jbrowse/plugin-gff3": "^2.16.1", + "@jbrowse/plugin-grid-bookmark": "^2.16.1", + "@jbrowse/plugin-gtf": "^2.16.1", + "@jbrowse/plugin-hic": "^2.16.1", + "@jbrowse/plugin-jobs-management": "^2.16.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.16.1", + "@jbrowse/plugin-linear-comparative-view": "^2.16.1", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/plugin-lollipop": "^2.16.1", + "@jbrowse/plugin-menus": "^2.16.1", + "@jbrowse/plugin-rdf": "^2.16.1", + "@jbrowse/plugin-sequence": "^2.16.1", + "@jbrowse/plugin-spreadsheet-view": "^2.16.1", + "@jbrowse/plugin-sv-inspector": "^2.16.1", + "@jbrowse/plugin-svg": "^2.16.1", + "@jbrowse/plugin-text-indexing": "^2.16.1", + "@jbrowse/plugin-trix": "^2.16.1", + "@jbrowse/plugin-variants": "^2.16.1", + "@jbrowse/plugin-wiggle": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", + "@jbrowse/text-indexing": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "@mui/x-data-grid": "^7.0.0", diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json index 12147fb14b..c285cea054 100644 --- a/products/jbrowse-img/package.json +++ b/products/jbrowse-img/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/img", - "version": "2.16.0", + "version": "2.16.1", "main": "dist/index.js", "module": "esm/index.js", "author": "JBrowse Team", @@ -27,8 +27,8 @@ "@babel/runtime": "^7.17.9", "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/react-linear-genome-view": "^2.16.0", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/react-linear-genome-view": "^2.16.1", "canvas": "^2.9.1", "jsdom": "^24.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-predefined-sessions/package.json b/products/jbrowse-predefined-sessions/package.json index d0952b124f..57de66c426 100644 --- a/products/jbrowse-predefined-sessions/package.json +++ b/products/jbrowse-predefined-sessions/package.json @@ -1,6 +1,6 @@ { "name": "jbrowse-predefined-sessions", - "version": "2.16.0", + "version": "2.16.1", "main": "index.js", "author": "JBrowse Team", "license": "MIT", diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json index d21534d22f..74250ef81e 100644 --- a/products/jbrowse-react-app/package.json +++ b/products/jbrowse-react-app/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-app", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 app React component", "keywords": [ "jbrowse", @@ -48,38 +48,38 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/app-core": "^2.16.0", - "@jbrowse/core": "^2.16.0", - "@jbrowse/plugin-alignments": "^2.16.0", - "@jbrowse/plugin-arc": "^2.16.0", - "@jbrowse/plugin-authentication": "^2.16.0", - "@jbrowse/plugin-bed": "^2.16.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.16.0", - "@jbrowse/plugin-circular-view": "^2.16.0", - "@jbrowse/plugin-comparative-adapters": "^2.16.0", - "@jbrowse/plugin-config": "^2.16.0", - "@jbrowse/plugin-data-management": "^2.16.0", - "@jbrowse/plugin-dotplot-view": "^2.16.0", - "@jbrowse/plugin-gccontent": "^2.16.0", - "@jbrowse/plugin-gff3": "^2.16.0", - "@jbrowse/plugin-grid-bookmark": "^2.16.0", - "@jbrowse/plugin-gtf": "^2.16.0", - "@jbrowse/plugin-hic": "^2.16.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.16.0", - "@jbrowse/plugin-linear-comparative-view": "^2.16.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/plugin-lollipop": "^2.16.0", - "@jbrowse/plugin-menus": "^2.16.0", - "@jbrowse/plugin-rdf": "^2.16.0", - "@jbrowse/plugin-sequence": "^2.16.0", - "@jbrowse/plugin-spreadsheet-view": "^2.16.0", - "@jbrowse/plugin-sv-inspector": "^2.16.0", - "@jbrowse/plugin-svg": "^2.16.0", - "@jbrowse/plugin-trix": "^2.16.0", - "@jbrowse/plugin-variants": "^2.16.0", - "@jbrowse/plugin-wiggle": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", - "@jbrowse/web-core": "^2.16.0", + "@jbrowse/app-core": "^2.16.1", + "@jbrowse/core": "^2.16.1", + "@jbrowse/plugin-alignments": "^2.16.1", + "@jbrowse/plugin-arc": "^2.16.1", + "@jbrowse/plugin-authentication": "^2.16.1", + "@jbrowse/plugin-bed": "^2.16.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.16.1", + "@jbrowse/plugin-circular-view": "^2.16.1", + "@jbrowse/plugin-comparative-adapters": "^2.16.1", + "@jbrowse/plugin-config": "^2.16.1", + "@jbrowse/plugin-data-management": "^2.16.1", + "@jbrowse/plugin-dotplot-view": "^2.16.1", + "@jbrowse/plugin-gccontent": "^2.16.1", + "@jbrowse/plugin-gff3": "^2.16.1", + "@jbrowse/plugin-grid-bookmark": "^2.16.1", + "@jbrowse/plugin-gtf": "^2.16.1", + "@jbrowse/plugin-hic": "^2.16.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.16.1", + "@jbrowse/plugin-linear-comparative-view": "^2.16.1", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/plugin-lollipop": "^2.16.1", + "@jbrowse/plugin-menus": "^2.16.1", + "@jbrowse/plugin-rdf": "^2.16.1", + "@jbrowse/plugin-sequence": "^2.16.1", + "@jbrowse/plugin-spreadsheet-view": "^2.16.1", + "@jbrowse/plugin-sv-inspector": "^2.16.1", + "@jbrowse/plugin-svg": "^2.16.1", + "@jbrowse/plugin-trix": "^2.16.1", + "@jbrowse/plugin-variants": "^2.16.1", + "@jbrowse/plugin-wiggle": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", + "@jbrowse/web-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "base64-js": "^1.0.0", diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json index be47cfa14a..0b4180cd2f 100644 --- a/products/jbrowse-react-circular-genome-view/package.json +++ b/products/jbrowse-react-circular-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-circular-genome-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 circular genome view React component", "keywords": [ "jbrowse", @@ -41,17 +41,17 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.16.0", - "@jbrowse/embedded-core": "^2.16.0", - "@jbrowse/plugin-authentication": "^2.16.0", - "@jbrowse/plugin-circular-view": "^2.16.0", - "@jbrowse/plugin-config": "^2.16.0", - "@jbrowse/plugin-data-management": "^2.16.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/plugin-sequence": "^2.16.0", - "@jbrowse/plugin-variants": "^2.16.0", - "@jbrowse/plugin-wiggle": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", + "@jbrowse/core": "^2.16.1", + "@jbrowse/embedded-core": "^2.16.1", + "@jbrowse/plugin-authentication": "^2.16.1", + "@jbrowse/plugin-circular-view": "^2.16.1", + "@jbrowse/plugin-config": "^2.16.1", + "@jbrowse/plugin-data-management": "^2.16.1", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/plugin-sequence": "^2.16.1", + "@jbrowse/plugin-variants": "^2.16.1", + "@jbrowse/plugin-wiggle": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json index cc352f48b4..ede841aa53 100644 --- a/products/jbrowse-react-linear-genome-view/package.json +++ b/products/jbrowse-react-linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-linear-genome-view", - "version": "2.16.0", + "version": "2.16.1", "description": "JBrowse 2 linear genome view React component", "keywords": [ "jbrowse", @@ -48,25 +48,25 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.16.0", - "@jbrowse/embedded-core": "^2.16.0", - "@jbrowse/plugin-alignments": "^2.16.0", - "@jbrowse/plugin-arc": "^2.16.0", - "@jbrowse/plugin-authentication": "^2.16.0", - "@jbrowse/plugin-bed": "^2.16.0", - "@jbrowse/plugin-circular-view": "^2.16.0", - "@jbrowse/plugin-config": "^2.16.0", - "@jbrowse/plugin-data-management": "^2.16.0", - "@jbrowse/plugin-gccontent": "^2.16.0", - "@jbrowse/plugin-gff3": "^2.16.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.16.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/plugin-sequence": "^2.16.0", - "@jbrowse/plugin-svg": "^2.16.0", - "@jbrowse/plugin-trix": "^2.16.0", - "@jbrowse/plugin-variants": "^2.16.0", - "@jbrowse/plugin-wiggle": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", + "@jbrowse/core": "^2.16.1", + "@jbrowse/embedded-core": "^2.16.1", + "@jbrowse/plugin-alignments": "^2.16.1", + "@jbrowse/plugin-arc": "^2.16.1", + "@jbrowse/plugin-authentication": "^2.16.1", + "@jbrowse/plugin-bed": "^2.16.1", + "@jbrowse/plugin-circular-view": "^2.16.1", + "@jbrowse/plugin-config": "^2.16.1", + "@jbrowse/plugin-data-management": "^2.16.1", + "@jbrowse/plugin-gccontent": "^2.16.1", + "@jbrowse/plugin-gff3": "^2.16.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.16.1", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/plugin-sequence": "^2.16.1", + "@jbrowse/plugin-svg": "^2.16.1", + "@jbrowse/plugin-trix": "^2.16.1", + "@jbrowse/plugin-variants": "^2.16.1", + "@jbrowse/plugin-wiggle": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index 4c63f9e299..97336ae608 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "2.16.0", + "version": "2.16.1", "license": "Apache-2.0", "homepage": ".", "main": "build", @@ -13,38 +13,38 @@ }, "dependencies": { "@fontsource/roboto": "^5.0.2", - "@jbrowse/app-core": "^2.16.0", - "@jbrowse/core": "^2.16.0", - "@jbrowse/plugin-alignments": "^2.16.0", - "@jbrowse/plugin-arc": "^2.16.0", - "@jbrowse/plugin-authentication": "^2.16.0", - "@jbrowse/plugin-bed": "^2.16.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.16.0", - "@jbrowse/plugin-circular-view": "^2.16.0", - "@jbrowse/plugin-comparative-adapters": "^2.16.0", - "@jbrowse/plugin-config": "^2.16.0", - "@jbrowse/plugin-data-management": "^2.16.0", - "@jbrowse/plugin-dotplot-view": "^2.16.0", - "@jbrowse/plugin-gccontent": "^2.16.0", - "@jbrowse/plugin-gff3": "^2.16.0", - "@jbrowse/plugin-grid-bookmark": "^2.16.0", - "@jbrowse/plugin-gtf": "^2.16.0", - "@jbrowse/plugin-hic": "^2.16.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.16.0", - "@jbrowse/plugin-linear-comparative-view": "^2.16.0", - "@jbrowse/plugin-linear-genome-view": "^2.16.0", - "@jbrowse/plugin-lollipop": "^2.16.0", - "@jbrowse/plugin-menus": "^2.16.0", - "@jbrowse/plugin-rdf": "^2.16.0", - "@jbrowse/plugin-sequence": "^2.16.0", - "@jbrowse/plugin-spreadsheet-view": "^2.16.0", - "@jbrowse/plugin-sv-inspector": "^2.16.0", - "@jbrowse/plugin-svg": "^2.16.0", - "@jbrowse/plugin-trix": "^2.16.0", - "@jbrowse/plugin-variants": "^2.16.0", - "@jbrowse/plugin-wiggle": "^2.16.0", - "@jbrowse/product-core": "^2.16.0", - "@jbrowse/web-core": "^2.16.0", + "@jbrowse/app-core": "^2.16.1", + "@jbrowse/core": "^2.16.1", + "@jbrowse/plugin-alignments": "^2.16.1", + "@jbrowse/plugin-arc": "^2.16.1", + "@jbrowse/plugin-authentication": "^2.16.1", + "@jbrowse/plugin-bed": "^2.16.1", + "@jbrowse/plugin-breakpoint-split-view": "^2.16.1", + "@jbrowse/plugin-circular-view": "^2.16.1", + "@jbrowse/plugin-comparative-adapters": "^2.16.1", + "@jbrowse/plugin-config": "^2.16.1", + "@jbrowse/plugin-data-management": "^2.16.1", + "@jbrowse/plugin-dotplot-view": "^2.16.1", + "@jbrowse/plugin-gccontent": "^2.16.1", + "@jbrowse/plugin-gff3": "^2.16.1", + "@jbrowse/plugin-grid-bookmark": "^2.16.1", + "@jbrowse/plugin-gtf": "^2.16.1", + "@jbrowse/plugin-hic": "^2.16.1", + "@jbrowse/plugin-legacy-jbrowse": "^2.16.1", + "@jbrowse/plugin-linear-comparative-view": "^2.16.1", + "@jbrowse/plugin-linear-genome-view": "^2.16.1", + "@jbrowse/plugin-lollipop": "^2.16.1", + "@jbrowse/plugin-menus": "^2.16.1", + "@jbrowse/plugin-rdf": "^2.16.1", + "@jbrowse/plugin-sequence": "^2.16.1", + "@jbrowse/plugin-spreadsheet-view": "^2.16.1", + "@jbrowse/plugin-sv-inspector": "^2.16.1", + "@jbrowse/plugin-svg": "^2.16.1", + "@jbrowse/plugin-trix": "^2.16.1", + "@jbrowse/plugin-variants": "^2.16.1", + "@jbrowse/plugin-wiggle": "^2.16.1", + "@jbrowse/product-core": "^2.16.1", + "@jbrowse/web-core": "^2.16.1", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "@mui/x-data-grid": "^7.0.0",