From 87eeb1fbf8311dbf88d5e75b5a265f03beffdda8 Mon Sep 17 00:00:00 2001 From: Colin Date: Wed, 4 Sep 2024 01:22:03 +0000 Subject: [PATCH] [update docs] v2.15.0 --- lerna.json | 2 +- packages/app-core/package.json | 4 +- packages/core/package.json | 2 +- packages/embedded-core/package.json | 6 +- packages/product-core/package.json | 4 +- packages/text-indexing/package.json | 4 +- packages/web-core/package.json | 6 +- plugins/alignments/package.json | 2 +- plugins/arc/package.json | 2 +- plugins/authentication/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/comparative-adapters/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/gccontent/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/grid-bookmark/package.json | 2 +- plugins/gtf/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/jobs-management/package.json | 4 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 2 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/text-indexing/package.json | 4 +- plugins/trix/package.json | 2 +- plugins/variants/package.json | 2 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 26 +++---- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 70 +++++++++---------- products/jbrowse-img/package.json | 6 +- .../jbrowse-predefined-sessions/package.json | 2 +- products/jbrowse-react-app/package.json | 66 ++++++++--------- .../package.json | 24 +++---- .../package.json | 40 +++++------ products/jbrowse-web/package.json | 66 ++++++++--------- 46 files changed, 198 insertions(+), 198 deletions(-) diff --git a/lerna.json b/lerna.json index dd4f0d8150..ab7440547c 100644 --- a/lerna.json +++ b/lerna.json @@ -1,5 +1,5 @@ { - "version": "2.14.0", + "version": "2.15.0", "npmClient": "yarn", "$schema": "node_modules/lerna/schemas/lerna-schema.json" } diff --git a/packages/app-core/package.json b/packages/app-core/package.json index e789ab0f7e..30a05d571c 100644 --- a/packages/app-core/package.json +++ b/packages/app-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/app-core", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.14.0", + "@jbrowse/product-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1", diff --git a/packages/core/package.json b/packages/core/package.json index 33439bb7d0..f29461c9c0 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json index d480dd1565..c28c048a5c 100644 --- a/packages/embedded-core/package.json +++ b/packages/embedded-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/embedded-core", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 code shared between embedded products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1", diff --git a/packages/product-core/package.json b/packages/product-core/package.json index 3c731b64e8..7fde94f267 100644 --- a/packages/product-core/package.json +++ b/packages/product-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/product-core", - "version": "2.14.0", + "version": "2.15.0", "sideEffects": false, "description": "JBrowse 2 code shared between products but not used by plugins", "keywords": [ @@ -43,7 +43,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.14.0", + "@jbrowse/core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "copy-to-clipboard": "^3.3.1", diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json index 0dd6ae0712..3a56d75975 100644 --- a/packages/text-indexing/package.json +++ b/packages/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/text-indexing", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 text indexing for desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.14.0", + "@jbrowse/core": "^2.15.0", "ixixx": "^2.0.1", "node-fetch": "^2.6.0", "sanitize-filename": "^1.6.3" diff --git a/packages/web-core/package.json b/packages/web-core/package.json index 9dca10050b..1bee946519 100644 --- a/packages/web-core/package.json +++ b/packages/web-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web-core", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 code shared between web-app type products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/app-core": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", + "@jbrowse/app-core": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "clone": "^2.0.0", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index 476e7ee9aa..dda9b16a4b 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/arc/package.json b/plugins/arc/package.json index 1f493b1cac..98dfd6b47a 100644 --- a/plugins/arc/package.json +++ b/plugins/arc/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-arc", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 arc adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json index d9af14a8ea..c59d8303b7 100644 --- a/plugins/authentication/package.json +++ b/plugins/authentication/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-authentication", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 Authentication", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index 9f58166e72..b778b0f94b 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index 44ccddf35d..f2c6d240ab 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index 7f6e160f9a..47c1a25a15 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json index 99f26e948d..61579e608b 100644 --- a/plugins/comparative-adapters/package.json +++ b/plugins/comparative-adapters/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-comparative-adapters", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 comparative adapters", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index 413992bbd5..fdb7245194 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index 0bc1f4fb84..2dcfbed1f7 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index 9982f4a71d..e9f8878cbb 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json index de306b1432..98ba402163 100644 --- a/plugins/gccontent/package.json +++ b/plugins/gccontent/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gccontent", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 gccontent concepts", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index 6a2288e01c..082ecc57bf 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json index e93c693b29..23de337efc 100644 --- a/plugins/grid-bookmark/package.json +++ b/plugins/grid-bookmark/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-grid-bookmark", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 grid bookmark widget", "keywords": [ "jbrowse", diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json index 19f5cbfdb8..372eb71653 100644 --- a/plugins/gtf/package.json +++ b/plugins/gtf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gtf", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 gtf feature adapter", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index 7b5080d650..d64ed4218e 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json index 9dbe5ab6fb..0318d3e01a 100644 --- a/plugins/jobs-management/package.json +++ b/plugins/jobs-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-jobs-management", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 jobs management", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.14.0", + "@jbrowse/text-indexing": "^2.15.0", "@mui/icons-material": "^6.0.0" }, "peerDependencies": { diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index 984034a92a..c24ee3ef4f 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index 10bc5742ed..61f583885f 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index 813791e38b..e694f3a6a1 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index cefc994223..748a10c10e 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index 2915a83c32..b94c1c7e8b 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 2f7996e257..2b21e39a46 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index e2c01f912e..d03ffcf104 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index 29bc6bd5d6..e9629b3736 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/vcf": "^5.0.9", - "@jbrowse/plugin-variants": "^2.14.0", + "@jbrowse/plugin-variants": "^2.15.0", "@mui/icons-material": "^6.0.0", "csvtojson": "^2.0.10" }, diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index 63682271bc..8b6604a172 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index 7325fbc894..2c802ce09f 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json index 2118111f9e..532e423d1b 100644 --- a/plugins/text-indexing/package.json +++ b/plugins/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-text-indexing", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 text indexing rpc method", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.14.0" + "@jbrowse/text-indexing": "^2.15.0" }, "peerDependencies": { "@jbrowse/core": "^2.0.0", diff --git a/plugins/trix/package.json b/plugins/trix/package.json index c72ae0023a..fc524bf4a5 100644 --- a/plugins/trix/package.json +++ b/plugins/trix/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trix", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 trix text search adapter", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index 9527faa1db..b2acfef204 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index 7f7efd7050..1bb35e7108 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index 1271c141d1..7cbaab5e74 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -205,7 +205,7 @@ EXAMPLES ``` _See code: -[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/add-assembly.ts)_ +[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -256,7 +256,7 @@ EXAMPLES ``` _See code: -[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/add-connection.ts)_ +[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -337,7 +337,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/add-track.ts)_ +[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -367,7 +367,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/add-track-json.ts)_ +[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -399,7 +399,7 @@ EXAMPLES ``` _See code: -[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/admin-server.ts)_ +[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -456,7 +456,7 @@ EXAMPLES ``` _See code: -[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/create.ts)_ +[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMAND]` @@ -477,7 +477,7 @@ DESCRIPTION ``` _See code: -[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.8/src/commands/help.ts)_ +[@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.10/src/commands/help.ts)_ ## `jbrowse make-pif FILE` @@ -507,7 +507,7 @@ EXAMPLES ``` _See code: -[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/make-pif.ts)_ +[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/make-pif.ts)_ ## `jbrowse remove-track TRACK` @@ -535,7 +535,7 @@ EXAMPLES ``` _See code: -[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/remove-track.ts)_ +[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/remove-track.ts)_ ## `jbrowse set-default-session` @@ -577,7 +577,7 @@ EXAMPLES ``` _See code: -[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/set-default-session.ts)_ +[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse sort-gff FILE` @@ -608,7 +608,7 @@ EXAMPLES ``` _See code: -[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/sort-gff.ts)_ +[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/sort-gff.ts)_ ## `jbrowse text-index` @@ -675,7 +675,7 @@ EXAMPLES ``` _See code: -[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/text-index.ts)_ +[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/text-index.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -738,7 +738,7 @@ EXAMPLES ``` _See code: -[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.14.0/products/jbrowse-cli/src/commands/upgrade.ts)_ +[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.15.0/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index 7f146815d5..2d565fcfb2 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "2.14.0", + "version": "2.15.0", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index fa8d8d8e4e..0682e170e3 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "Apache-2.0", "homepage": "./", @@ -42,40 +42,40 @@ "@emotion/react": "^11.9.0", "@fontsource/roboto": "^5.0.2", "@gmod/faidx": "^1.0.1", - "@jbrowse/app-core": "^2.14.0", - "@jbrowse/core": "^2.14.0", - "@jbrowse/plugin-alignments": "^2.14.0", - "@jbrowse/plugin-arc": "^2.14.0", - "@jbrowse/plugin-authentication": "^2.14.0", - "@jbrowse/plugin-bed": "^2.14.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.14.0", - "@jbrowse/plugin-circular-view": "^2.14.0", - "@jbrowse/plugin-comparative-adapters": "^2.14.0", - "@jbrowse/plugin-config": "^2.14.0", - "@jbrowse/plugin-data-management": "^2.14.0", - "@jbrowse/plugin-dotplot-view": "^2.14.0", - "@jbrowse/plugin-gccontent": "^2.14.0", - "@jbrowse/plugin-gff3": "^2.14.0", - "@jbrowse/plugin-grid-bookmark": "^2.14.0", - "@jbrowse/plugin-gtf": "^2.14.0", - "@jbrowse/plugin-hic": "^2.14.0", - "@jbrowse/plugin-jobs-management": "^2.14.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.14.0", - "@jbrowse/plugin-linear-comparative-view": "^2.14.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/plugin-lollipop": "^2.14.0", - "@jbrowse/plugin-menus": "^2.14.0", - "@jbrowse/plugin-rdf": "^2.14.0", - "@jbrowse/plugin-sequence": "^2.14.0", - "@jbrowse/plugin-spreadsheet-view": "^2.14.0", - "@jbrowse/plugin-sv-inspector": "^2.14.0", - "@jbrowse/plugin-svg": "^2.14.0", - "@jbrowse/plugin-text-indexing": "^2.14.0", - "@jbrowse/plugin-trix": "^2.14.0", - "@jbrowse/plugin-variants": "^2.14.0", - "@jbrowse/plugin-wiggle": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", - "@jbrowse/text-indexing": "^2.14.0", + "@jbrowse/app-core": "^2.15.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/plugin-alignments": "^2.15.0", + "@jbrowse/plugin-arc": "^2.15.0", + "@jbrowse/plugin-authentication": "^2.15.0", + "@jbrowse/plugin-bed": "^2.15.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.15.0", + "@jbrowse/plugin-circular-view": "^2.15.0", + "@jbrowse/plugin-comparative-adapters": "^2.15.0", + "@jbrowse/plugin-config": "^2.15.0", + "@jbrowse/plugin-data-management": "^2.15.0", + "@jbrowse/plugin-dotplot-view": "^2.15.0", + "@jbrowse/plugin-gccontent": "^2.15.0", + "@jbrowse/plugin-gff3": "^2.15.0", + "@jbrowse/plugin-grid-bookmark": "^2.15.0", + "@jbrowse/plugin-gtf": "^2.15.0", + "@jbrowse/plugin-hic": "^2.15.0", + "@jbrowse/plugin-jobs-management": "^2.15.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.15.0", + "@jbrowse/plugin-linear-comparative-view": "^2.15.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/plugin-lollipop": "^2.15.0", + "@jbrowse/plugin-menus": "^2.15.0", + "@jbrowse/plugin-rdf": "^2.15.0", + "@jbrowse/plugin-sequence": "^2.15.0", + "@jbrowse/plugin-spreadsheet-view": "^2.15.0", + "@jbrowse/plugin-sv-inspector": "^2.15.0", + "@jbrowse/plugin-svg": "^2.15.0", + "@jbrowse/plugin-text-indexing": "^2.15.0", + "@jbrowse/plugin-trix": "^2.15.0", + "@jbrowse/plugin-variants": "^2.15.0", + "@jbrowse/plugin-wiggle": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", + "@jbrowse/text-indexing": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "@mui/x-data-grid": "^7.0.0", diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json index 7ea38215f8..1b6ea1e6bc 100644 --- a/products/jbrowse-img/package.json +++ b/products/jbrowse-img/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/img", - "version": "2.14.0", + "version": "2.15.0", "main": "dist/index.js", "module": "esm/index.js", "author": "JBrowse Team", @@ -27,8 +27,8 @@ "@babel/runtime": "^7.17.9", "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/react-linear-genome-view": "^2.14.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/react-linear-genome-view": "^2.15.0", "canvas": "^2.9.1", "jsdom": "^24.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-predefined-sessions/package.json b/products/jbrowse-predefined-sessions/package.json index 584d5d10cf..5a12573bf6 100644 --- a/products/jbrowse-predefined-sessions/package.json +++ b/products/jbrowse-predefined-sessions/package.json @@ -1,6 +1,6 @@ { "name": "jbrowse-predefined-sessions", - "version": "2.14.0", + "version": "2.15.0", "main": "index.js", "author": "JBrowse Team", "license": "MIT", diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json index d6c448b82b..a9f7a599c4 100644 --- a/products/jbrowse-react-app/package.json +++ b/products/jbrowse-react-app/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-app", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 app React component", "keywords": [ "jbrowse", @@ -48,38 +48,38 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/app-core": "^2.14.0", - "@jbrowse/core": "^2.14.0", - "@jbrowse/plugin-alignments": "^2.14.0", - "@jbrowse/plugin-arc": "^2.14.0", - "@jbrowse/plugin-authentication": "^2.14.0", - "@jbrowse/plugin-bed": "^2.14.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.14.0", - "@jbrowse/plugin-circular-view": "^2.14.0", - "@jbrowse/plugin-comparative-adapters": "^2.14.0", - "@jbrowse/plugin-config": "^2.14.0", - "@jbrowse/plugin-data-management": "^2.14.0", - "@jbrowse/plugin-dotplot-view": "^2.14.0", - "@jbrowse/plugin-gccontent": "^2.14.0", - "@jbrowse/plugin-gff3": "^2.14.0", - "@jbrowse/plugin-grid-bookmark": "^2.14.0", - "@jbrowse/plugin-gtf": "^2.14.0", - "@jbrowse/plugin-hic": "^2.14.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.14.0", - "@jbrowse/plugin-linear-comparative-view": "^2.14.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/plugin-lollipop": "^2.14.0", - "@jbrowse/plugin-menus": "^2.14.0", - "@jbrowse/plugin-rdf": "^2.14.0", - "@jbrowse/plugin-sequence": "^2.14.0", - "@jbrowse/plugin-spreadsheet-view": "^2.14.0", - "@jbrowse/plugin-sv-inspector": "^2.14.0", - "@jbrowse/plugin-svg": "^2.14.0", - "@jbrowse/plugin-trix": "^2.14.0", - "@jbrowse/plugin-variants": "^2.14.0", - "@jbrowse/plugin-wiggle": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", - "@jbrowse/web-core": "^2.14.0", + "@jbrowse/app-core": "^2.15.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/plugin-alignments": "^2.15.0", + "@jbrowse/plugin-arc": "^2.15.0", + "@jbrowse/plugin-authentication": "^2.15.0", + "@jbrowse/plugin-bed": "^2.15.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.15.0", + "@jbrowse/plugin-circular-view": "^2.15.0", + "@jbrowse/plugin-comparative-adapters": "^2.15.0", + "@jbrowse/plugin-config": "^2.15.0", + "@jbrowse/plugin-data-management": "^2.15.0", + "@jbrowse/plugin-dotplot-view": "^2.15.0", + "@jbrowse/plugin-gccontent": "^2.15.0", + "@jbrowse/plugin-gff3": "^2.15.0", + "@jbrowse/plugin-grid-bookmark": "^2.15.0", + "@jbrowse/plugin-gtf": "^2.15.0", + "@jbrowse/plugin-hic": "^2.15.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.15.0", + "@jbrowse/plugin-linear-comparative-view": "^2.15.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/plugin-lollipop": "^2.15.0", + "@jbrowse/plugin-menus": "^2.15.0", + "@jbrowse/plugin-rdf": "^2.15.0", + "@jbrowse/plugin-sequence": "^2.15.0", + "@jbrowse/plugin-spreadsheet-view": "^2.15.0", + "@jbrowse/plugin-sv-inspector": "^2.15.0", + "@jbrowse/plugin-svg": "^2.15.0", + "@jbrowse/plugin-trix": "^2.15.0", + "@jbrowse/plugin-variants": "^2.15.0", + "@jbrowse/plugin-wiggle": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", + "@jbrowse/web-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "base64-js": "^1.0.0", diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json index 9125b6c6ba..e60db22649 100644 --- a/products/jbrowse-react-circular-genome-view/package.json +++ b/products/jbrowse-react-circular-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-circular-genome-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 circular genome view React component", "keywords": [ "jbrowse", @@ -41,17 +41,17 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.14.0", - "@jbrowse/embedded-core": "^2.14.0", - "@jbrowse/plugin-authentication": "^2.14.0", - "@jbrowse/plugin-circular-view": "^2.14.0", - "@jbrowse/plugin-config": "^2.14.0", - "@jbrowse/plugin-data-management": "^2.14.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/plugin-sequence": "^2.14.0", - "@jbrowse/plugin-variants": "^2.14.0", - "@jbrowse/plugin-wiggle": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/embedded-core": "^2.15.0", + "@jbrowse/plugin-authentication": "^2.15.0", + "@jbrowse/plugin-circular-view": "^2.15.0", + "@jbrowse/plugin-config": "^2.15.0", + "@jbrowse/plugin-data-management": "^2.15.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/plugin-sequence": "^2.15.0", + "@jbrowse/plugin-variants": "^2.15.0", + "@jbrowse/plugin-wiggle": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json index b2cdcfca69..bd52874d84 100644 --- a/products/jbrowse-react-linear-genome-view/package.json +++ b/products/jbrowse-react-linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-linear-genome-view", - "version": "2.14.0", + "version": "2.15.0", "description": "JBrowse 2 linear genome view React component", "keywords": [ "jbrowse", @@ -48,25 +48,25 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.14.0", - "@jbrowse/embedded-core": "^2.14.0", - "@jbrowse/plugin-alignments": "^2.14.0", - "@jbrowse/plugin-arc": "^2.14.0", - "@jbrowse/plugin-authentication": "^2.14.0", - "@jbrowse/plugin-bed": "^2.14.0", - "@jbrowse/plugin-circular-view": "^2.14.0", - "@jbrowse/plugin-config": "^2.14.0", - "@jbrowse/plugin-data-management": "^2.14.0", - "@jbrowse/plugin-gccontent": "^2.14.0", - "@jbrowse/plugin-gff3": "^2.14.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.14.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/plugin-sequence": "^2.14.0", - "@jbrowse/plugin-svg": "^2.14.0", - "@jbrowse/plugin-trix": "^2.14.0", - "@jbrowse/plugin-variants": "^2.14.0", - "@jbrowse/plugin-wiggle": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/embedded-core": "^2.15.0", + "@jbrowse/plugin-alignments": "^2.15.0", + "@jbrowse/plugin-arc": "^2.15.0", + "@jbrowse/plugin-authentication": "^2.15.0", + "@jbrowse/plugin-bed": "^2.15.0", + "@jbrowse/plugin-circular-view": "^2.15.0", + "@jbrowse/plugin-config": "^2.15.0", + "@jbrowse/plugin-data-management": "^2.15.0", + "@jbrowse/plugin-gccontent": "^2.15.0", + "@jbrowse/plugin-gff3": "^2.15.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.15.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/plugin-sequence": "^2.15.0", + "@jbrowse/plugin-svg": "^2.15.0", + "@jbrowse/plugin-trix": "^2.15.0", + "@jbrowse/plugin-variants": "^2.15.0", + "@jbrowse/plugin-wiggle": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index bcb21263a7..bf387bb2bc 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "2.14.0", + "version": "2.15.0", "license": "Apache-2.0", "homepage": ".", "main": "build", @@ -15,38 +15,38 @@ }, "dependencies": { "@fontsource/roboto": "^5.0.2", - "@jbrowse/app-core": "^2.14.0", - "@jbrowse/core": "^2.14.0", - "@jbrowse/plugin-alignments": "^2.14.0", - "@jbrowse/plugin-arc": "^2.14.0", - "@jbrowse/plugin-authentication": "^2.14.0", - "@jbrowse/plugin-bed": "^2.14.0", - "@jbrowse/plugin-breakpoint-split-view": "^2.14.0", - "@jbrowse/plugin-circular-view": "^2.14.0", - "@jbrowse/plugin-comparative-adapters": "^2.14.0", - "@jbrowse/plugin-config": "^2.14.0", - "@jbrowse/plugin-data-management": "^2.14.0", - "@jbrowse/plugin-dotplot-view": "^2.14.0", - "@jbrowse/plugin-gccontent": "^2.14.0", - "@jbrowse/plugin-gff3": "^2.14.0", - "@jbrowse/plugin-grid-bookmark": "^2.14.0", - "@jbrowse/plugin-gtf": "^2.14.0", - "@jbrowse/plugin-hic": "^2.14.0", - "@jbrowse/plugin-legacy-jbrowse": "^2.14.0", - "@jbrowse/plugin-linear-comparative-view": "^2.14.0", - "@jbrowse/plugin-linear-genome-view": "^2.14.0", - "@jbrowse/plugin-lollipop": "^2.14.0", - "@jbrowse/plugin-menus": "^2.14.0", - "@jbrowse/plugin-rdf": "^2.14.0", - "@jbrowse/plugin-sequence": "^2.14.0", - "@jbrowse/plugin-spreadsheet-view": "^2.14.0", - "@jbrowse/plugin-sv-inspector": "^2.14.0", - "@jbrowse/plugin-svg": "^2.14.0", - "@jbrowse/plugin-trix": "^2.14.0", - "@jbrowse/plugin-variants": "^2.14.0", - "@jbrowse/plugin-wiggle": "^2.14.0", - "@jbrowse/product-core": "^2.14.0", - "@jbrowse/web-core": "^2.14.0", + "@jbrowse/app-core": "^2.15.0", + "@jbrowse/core": "^2.15.0", + "@jbrowse/plugin-alignments": "^2.15.0", + "@jbrowse/plugin-arc": "^2.15.0", + "@jbrowse/plugin-authentication": "^2.15.0", + "@jbrowse/plugin-bed": "^2.15.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.15.0", + "@jbrowse/plugin-circular-view": "^2.15.0", + "@jbrowse/plugin-comparative-adapters": "^2.15.0", + "@jbrowse/plugin-config": "^2.15.0", + "@jbrowse/plugin-data-management": "^2.15.0", + "@jbrowse/plugin-dotplot-view": "^2.15.0", + "@jbrowse/plugin-gccontent": "^2.15.0", + "@jbrowse/plugin-gff3": "^2.15.0", + "@jbrowse/plugin-grid-bookmark": "^2.15.0", + "@jbrowse/plugin-gtf": "^2.15.0", + "@jbrowse/plugin-hic": "^2.15.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.15.0", + "@jbrowse/plugin-linear-comparative-view": "^2.15.0", + "@jbrowse/plugin-linear-genome-view": "^2.15.0", + "@jbrowse/plugin-lollipop": "^2.15.0", + "@jbrowse/plugin-menus": "^2.15.0", + "@jbrowse/plugin-rdf": "^2.15.0", + "@jbrowse/plugin-sequence": "^2.15.0", + "@jbrowse/plugin-spreadsheet-view": "^2.15.0", + "@jbrowse/plugin-sv-inspector": "^2.15.0", + "@jbrowse/plugin-svg": "^2.15.0", + "@jbrowse/plugin-trix": "^2.15.0", + "@jbrowse/plugin-variants": "^2.15.0", + "@jbrowse/plugin-wiggle": "^2.15.0", + "@jbrowse/product-core": "^2.15.0", + "@jbrowse/web-core": "^2.15.0", "@mui/icons-material": "^6.0.0", "@mui/material": "^6.0.0", "@mui/x-data-grid": "^7.0.0",