diff --git a/plugins/bed/src/BigBedAdapter/configSchema.ts b/plugins/bed/src/BigBedAdapter/configSchema.ts index ac947ced6b..297383eac8 100644 --- a/plugins/bed/src/BigBedAdapter/configSchema.ts +++ b/plugins/bed/src/BigBedAdapter/configSchema.ts @@ -31,7 +31,7 @@ const BigBedAdapter = ConfigurationSchema( aggregateField: { type: 'string', description: 'An attribute to aggregate features with', - defaultValue: 'geneName', + defaultValue: 'geneName2', }, }, { explicitlyTyped: true }, diff --git a/plugins/variants/src/VcfFeature/util.ts b/plugins/variants/src/VcfFeature/util.ts index 91c68b8b83..2ba763f36f 100644 --- a/plugins/variants/src/VcfFeature/util.ts +++ b/plugins/variants/src/VcfFeature/util.ts @@ -66,10 +66,9 @@ export function getSOTermAndDescription( }), ) } - if (soTerms.size) { - return [[...soTerms].join(','), [...descriptions].join(',')] - } - return [] + return soTerms.size + ? [[...soTerms].join(','), [...descriptions].join(',')] + : [] } export function getSOAndDescFromAltDefs(alt: string, parser: VCF): string[] { diff --git a/yarn.lock b/yarn.lock index d31ed10a0b..fcb2077b9e 100644 --- a/yarn.lock +++ b/yarn.lock @@ -2325,9 +2325,9 @@ integrity sha512-BTMPPUS667K2eGQ6ASc69908l3hDWF2sV/ZoTuMqIz1AfiHuaDMpcdELNf61bVeTWvUUFG5qkOQApcWMvlIvjw== "@gmod/vcf@^6.0.0": - version "6.0.3" - resolved "https://registry.yarnpkg.com/@gmod/vcf/-/vcf-6.0.3.tgz#ad0b6a56a39d24c6433cc7cc340b59cc5a3559f2" - integrity sha512-an+wUQuew/HbBzWUGX99preQnUeNqSZYGwO54OwjcUUX6JLpnny2xOBBmVpP78V3zlJFsaTBN4Ek4GOCUAMMJg== + version "6.0.6" + resolved "https://registry.yarnpkg.com/@gmod/vcf/-/vcf-6.0.6.tgz#8b82c0d6c6c3badead814ca9fc39b78cad2ce1f7" + integrity sha512-pgNGVbglMrNZKUiRgxCxOEZUsF9LyGTOHxu6DJvbLU7ZJEiLo6uAHIJYTmk6Z8pdT9lLCqNd9mJCc/g0TbmpnA== "@humanfs/core@^0.19.1": version "0.19.1" @@ -4974,9 +4974,9 @@ integrity sha512-hov8bUuiLiyFPGyFPE1lwWhmzYbirOXQNNo40+y3zow8aFVTeyn3VWL0VFFfdNddA8S4Vf0Tc062rzyNr7Paag== "@types/ms@*": - version "0.7.34" - resolved "https://registry.yarnpkg.com/@types/ms/-/ms-0.7.34.tgz#10964ba0dee6ac4cd462e2795b6bebd407303433" - integrity sha512-nG96G3Wp6acyAgJqGasjODb+acrI7KltPiRxzHPXnP3NgI28bpQDRv53olbqGXbfcgF5aiiHmO3xpwEpS5Ld9g== + version "2.1.0" + resolved "https://registry.yarnpkg.com/@types/ms/-/ms-2.1.0.tgz#052aa67a48eccc4309d7f0191b7e41434b90bb78" + integrity sha512-GsCCIZDE/p3i96vtEqx+7dBUGXrc7zeSK3wwPHIaRThS+9OhWIXRqzs4d6k1SVU8g91DrNRWxWUGhp5KXQb2VA== "@types/mute-stream@^0.0.4": version "0.0.4"