From 511048cb6965f0bf624c96de244e7fd47fce17d6 Mon Sep 17 00:00:00 2001 From: Colin Date: Mon, 3 Jun 2024 02:29:46 +0000 Subject: [PATCH] [update docs] v2.11.2 --- lerna.json | 2 +- packages/app-core/package.json | 4 +- packages/core/package.json | 2 +- packages/embedded-core/package.json | 4 +- packages/product-core/package.json | 4 +- packages/text-indexing/package.json | 2 +- packages/web-core/package.json | 6 +- plugins/alignments/package.json | 2 +- plugins/arc/package.json | 2 +- plugins/authentication/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/comparative-adapters/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/gccontent/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/grid-bookmark/package.json | 2 +- plugins/gtf/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/jobs-management/package.json | 4 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 2 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/text-indexing/package.json | 4 +- plugins/trix/package.json | 2 +- plugins/variants/package.json | 2 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 24 +++---- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 72 +++++++++---------- products/jbrowse-img/package.json | 6 +- .../jbrowse-predefined-sessions/package.json | 2 +- products/jbrowse-react-app/package.json | 66 ++++++++--------- .../package.json | 24 +++---- .../package.json | 40 +++++------ products/jbrowse-web/package.json | 66 ++++++++--------- 46 files changed, 196 insertions(+), 196 deletions(-) diff --git a/lerna.json b/lerna.json index e296e6de6a..b9a6f36b86 100644 --- a/lerna.json +++ b/lerna.json @@ -1,5 +1,5 @@ { - "version": "2.11.1", + "version": "2.11.2", "npmClient": "yarn", "$schema": "node_modules/lerna/schemas/lerna-schema.json" } diff --git a/packages/app-core/package.json b/packages/app-core/package.json index 9d576417d4..1cfc4fcb9b 100644 --- a/packages/app-core/package.json +++ b/packages/app-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/app-core", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.11.1", + "@jbrowse/product-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/core/package.json b/packages/core/package.json index 86b58100d1..e3b4cb4bd1 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json index 0d54c67247..f2e7d55c6a 100644 --- a/packages/embedded-core/package.json +++ b/packages/embedded-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/embedded-core", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 code shared between embedded products", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.11.1", + "@jbrowse/product-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/product-core/package.json b/packages/product-core/package.json index 8e6c3ead47..88f6c2e4df 100644 --- a/packages/product-core/package.json +++ b/packages/product-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/product-core", - "version": "2.11.1", + "version": "2.11.2", "sideEffects": false, "description": "JBrowse 2 code shared between products but not used by plugins", "keywords": [ @@ -43,7 +43,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.11.1", + "@jbrowse/core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json index b4021c2b93..230ff4c1c1 100644 --- a/packages/text-indexing/package.json +++ b/packages/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/text-indexing", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 text indexing for desktop", "keywords": [ "jbrowse", diff --git a/packages/web-core/package.json b/packages/web-core/package.json index 6c87328261..da85a7d3f9 100644 --- a/packages/web-core/package.json +++ b/packages/web-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web-core", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 code shared between web-app type products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/app-core": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", + "@jbrowse/app-core": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "clone": "^2.0.0", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index 0596725e24..1cb3ba999f 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/arc/package.json b/plugins/arc/package.json index 76249a7266..5ecf71f656 100644 --- a/plugins/arc/package.json +++ b/plugins/arc/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-arc", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 arc adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json index 2b803bdba1..a707aa2fef 100644 --- a/plugins/authentication/package.json +++ b/plugins/authentication/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-authentication", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 Authentication", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index 60740458c6..bb66aea883 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index 289bfb36db..0fddb7b41b 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index 3522b5107e..78ae87390d 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json index 7cd154ae08..de9d0c38ad 100644 --- a/plugins/comparative-adapters/package.json +++ b/plugins/comparative-adapters/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-comparative-adapters", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 comparative adapters", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index 7db9b5cebf..0e1841506f 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index 61971a975d..b9b1e5799f 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index b7af8840e5..fca3f47054 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json index b8770a77f0..dc2bfe8bcc 100644 --- a/plugins/gccontent/package.json +++ b/plugins/gccontent/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gccontent", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 gccontent concepts", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index 31a133b6ab..94515d1c5c 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json index 280bd9f80b..b50ecff4a1 100644 --- a/plugins/grid-bookmark/package.json +++ b/plugins/grid-bookmark/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-grid-bookmark", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 grid bookmark widget", "keywords": [ "jbrowse", diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json index 009f7ede34..7c2dfdfe87 100644 --- a/plugins/gtf/package.json +++ b/plugins/gtf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gtf", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 gtf feature adapter", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index a13d99c440..1f6e339489 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json index 6402f83155..397c502a36 100644 --- a/plugins/jobs-management/package.json +++ b/plugins/jobs-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-jobs-management", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 jobs management", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.11.1", + "@jbrowse/text-indexing": "^2.11.2", "@mui/icons-material": "^5.0.0" }, "peerDependencies": { diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index 1974a7cb95..69f13de8c0 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index d075dd9bd8..6ca7995dcc 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index 082a98de24..92199f3acd 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index 372e0f2769..429efcdbd4 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index c39b4a5322..13f0776a33 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 9754575c61..2fe546d598 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index cbde05c6c6..19ba6dd873 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index 4a61164308..090b1ef385 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/vcf": "^5.0.9", - "@jbrowse/plugin-variants": "^2.11.1", + "@jbrowse/plugin-variants": "^2.11.2", "@mui/icons-material": "^5.0.1", "csvtojson": "^2.0.10" }, diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index f6744de5a8..647ce8d2cd 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index bcc9ae6487..cc362e1bed 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json index f3b364825f..413efdef2e 100644 --- a/plugins/text-indexing/package.json +++ b/plugins/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-text-indexing", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 text indexing rpc method", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.11.1" + "@jbrowse/text-indexing": "^2.11.2" }, "peerDependencies": { "@jbrowse/core": "^2.0.0", diff --git a/plugins/trix/package.json b/plugins/trix/package.json index 06fc08ed28..dc51c42ef5 100644 --- a/plugins/trix/package.json +++ b/plugins/trix/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trix", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 trix text search adapter", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index 88bf175513..3e7491635b 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index 49a2981cb9..3878f4ac96 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index ec3b0929c4..bb93174d7b 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -205,7 +205,7 @@ EXAMPLES ``` _See code: -[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/add-assembly.ts)_ +[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -256,7 +256,7 @@ EXAMPLES ``` _See code: -[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/add-connection.ts)_ +[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -337,7 +337,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/add-track.ts)_ +[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -367,7 +367,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/add-track-json.ts)_ +[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -399,7 +399,7 @@ EXAMPLES ``` _See code: -[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/admin-server.ts)_ +[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -456,7 +456,7 @@ EXAMPLES ``` _See code: -[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/create.ts)_ +[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMAND]` @@ -507,7 +507,7 @@ EXAMPLES ``` _See code: -[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/make-pif.ts)_ +[src/commands/make-pif.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/make-pif.ts)_ ## `jbrowse remove-track TRACK` @@ -535,7 +535,7 @@ EXAMPLES ``` _See code: -[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/remove-track.ts)_ +[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/remove-track.ts)_ ## `jbrowse set-default-session` @@ -568,7 +568,7 @@ EXAMPLES ``` _See code: -[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/set-default-session.ts)_ +[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse sort-gff FILE` @@ -599,7 +599,7 @@ EXAMPLES ``` _See code: -[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/sort-gff.ts)_ +[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/sort-gff.ts)_ ## `jbrowse text-index` @@ -666,7 +666,7 @@ EXAMPLES ``` _See code: -[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/text-index.ts)_ +[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/text-index.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -729,7 +729,7 @@ EXAMPLES ``` _See code: -[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.1/products/jbrowse-cli/src/commands/upgrade.ts)_ +[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.11.2/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index ccb323b68a..371b03cd83 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "2.11.1", + "version": "2.11.2", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index e3766574e1..0055c86b38 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "Apache-2.0", "homepage": "./", @@ -42,44 +42,45 @@ "@emotion/react": "^11.9.0", "@fontsource/roboto": "^5.0.2", "@gmod/faidx": "^1.0.1", - "@jbrowse/app-core": "^2.11.1", - "@jbrowse/core": "^2.11.1", - "@jbrowse/plugin-alignments": "^2.11.1", - "@jbrowse/plugin-arc": "^2.11.1", - "@jbrowse/plugin-authentication": "^2.11.1", - "@jbrowse/plugin-bed": "^2.11.1", - "@jbrowse/plugin-breakpoint-split-view": "^2.11.1", - "@jbrowse/plugin-circular-view": "^2.11.1", - "@jbrowse/plugin-comparative-adapters": "^2.11.1", - "@jbrowse/plugin-config": "^2.11.1", - "@jbrowse/plugin-data-management": "^2.11.1", - "@jbrowse/plugin-dotplot-view": "^2.11.1", - "@jbrowse/plugin-gccontent": "^2.11.1", - "@jbrowse/plugin-gff3": "^2.11.1", - "@jbrowse/plugin-grid-bookmark": "^2.11.1", - "@jbrowse/plugin-gtf": "^2.11.1", - "@jbrowse/plugin-hic": "^2.11.1", - "@jbrowse/plugin-jobs-management": "^2.11.1", - "@jbrowse/plugin-legacy-jbrowse": "^2.11.1", - "@jbrowse/plugin-linear-comparative-view": "^2.11.1", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/plugin-lollipop": "^2.11.1", - "@jbrowse/plugin-menus": "^2.11.1", - "@jbrowse/plugin-rdf": "^2.11.1", - "@jbrowse/plugin-sequence": "^2.11.1", - "@jbrowse/plugin-spreadsheet-view": "^2.11.1", - "@jbrowse/plugin-sv-inspector": "^2.11.1", - "@jbrowse/plugin-svg": "^2.11.1", - "@jbrowse/plugin-text-indexing": "^2.11.1", - "@jbrowse/plugin-trix": "^2.11.1", - "@jbrowse/plugin-variants": "^2.11.1", - "@jbrowse/plugin-wiggle": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", - "@jbrowse/text-indexing": "^2.11.1", + "@jbrowse/app-core": "^2.11.2", + "@jbrowse/core": "^2.11.2", + "@jbrowse/plugin-alignments": "^2.11.2", + "@jbrowse/plugin-arc": "^2.11.2", + "@jbrowse/plugin-authentication": "^2.11.2", + "@jbrowse/plugin-bed": "^2.11.2", + "@jbrowse/plugin-breakpoint-split-view": "^2.11.2", + "@jbrowse/plugin-circular-view": "^2.11.2", + "@jbrowse/plugin-comparative-adapters": "^2.11.2", + "@jbrowse/plugin-config": "^2.11.2", + "@jbrowse/plugin-data-management": "^2.11.2", + "@jbrowse/plugin-dotplot-view": "^2.11.2", + "@jbrowse/plugin-gccontent": "^2.11.2", + "@jbrowse/plugin-gff3": "^2.11.2", + "@jbrowse/plugin-grid-bookmark": "^2.11.2", + "@jbrowse/plugin-gtf": "^2.11.2", + "@jbrowse/plugin-hic": "^2.11.2", + "@jbrowse/plugin-jobs-management": "^2.11.2", + "@jbrowse/plugin-legacy-jbrowse": "^2.11.2", + "@jbrowse/plugin-linear-comparative-view": "^2.11.2", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/plugin-lollipop": "^2.11.2", + "@jbrowse/plugin-menus": "^2.11.2", + "@jbrowse/plugin-rdf": "^2.11.2", + "@jbrowse/plugin-sequence": "^2.11.2", + "@jbrowse/plugin-spreadsheet-view": "^2.11.2", + "@jbrowse/plugin-sv-inspector": "^2.11.2", + "@jbrowse/plugin-svg": "^2.11.2", + "@jbrowse/plugin-text-indexing": "^2.11.2", + "@jbrowse/plugin-trix": "^2.11.2", + "@jbrowse/plugin-variants": "^2.11.2", + "@jbrowse/plugin-wiggle": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", + "@jbrowse/text-indexing": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^7.0.0", "clone": "^2.1.2", + "date-fns": "^3.6.0", "deepmerge": "^4.2.2", "electron-debug": "^3.0.1", "electron-updater": "^6.1.1", @@ -99,7 +100,6 @@ "rxjs": "^7.0.0", "sanitize-filename": "^1.6.3", "semver": "^7.3.5", - "date-fns": "^3.6.0", "tss-react": "^4.4.1", "use-query-params": "^2.0.0" }, diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json index 6f929dfa50..d7e394949b 100644 --- a/products/jbrowse-img/package.json +++ b/products/jbrowse-img/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/img", - "version": "2.11.1", + "version": "2.11.2", "main": "dist/index.js", "module": "esm/index.js", "author": "JBrowse Team", @@ -27,8 +27,8 @@ "@babel/runtime": "^7.17.9", "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/react-linear-genome-view": "^2.11.1", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/react-linear-genome-view": "^2.11.2", "canvas": "^2.9.1", "jsdom": "^24.0.0", "mobx": "^6.6.0", diff --git a/products/jbrowse-predefined-sessions/package.json b/products/jbrowse-predefined-sessions/package.json index 52f10619bd..5c7447b91e 100644 --- a/products/jbrowse-predefined-sessions/package.json +++ b/products/jbrowse-predefined-sessions/package.json @@ -1,6 +1,6 @@ { "name": "jbrowse-predefined-sessions", - "version": "2.11.1", + "version": "2.11.2", "main": "index.js", "author": "JBrowse Team", "license": "MIT", diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json index 0dcfadcbec..cfbf68d51c 100644 --- a/products/jbrowse-react-app/package.json +++ b/products/jbrowse-react-app/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-app", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 app React component", "keywords": [ "jbrowse", @@ -48,38 +48,38 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/app-core": "^2.11.1", - "@jbrowse/core": "^2.11.1", - "@jbrowse/plugin-alignments": "^2.11.1", - "@jbrowse/plugin-arc": "^2.11.1", - "@jbrowse/plugin-authentication": "^2.11.1", - "@jbrowse/plugin-bed": "^2.11.1", - "@jbrowse/plugin-breakpoint-split-view": "^2.11.1", - "@jbrowse/plugin-circular-view": "^2.11.1", - "@jbrowse/plugin-comparative-adapters": "^2.11.1", - "@jbrowse/plugin-config": "^2.11.1", - "@jbrowse/plugin-data-management": "^2.11.1", - "@jbrowse/plugin-dotplot-view": "^2.11.1", - "@jbrowse/plugin-gccontent": "^2.11.1", - "@jbrowse/plugin-gff3": "^2.11.1", - "@jbrowse/plugin-grid-bookmark": "^2.11.1", - "@jbrowse/plugin-gtf": "^2.11.1", - "@jbrowse/plugin-hic": "^2.11.1", - "@jbrowse/plugin-legacy-jbrowse": "^2.11.1", - "@jbrowse/plugin-linear-comparative-view": "^2.11.1", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/plugin-lollipop": "^2.11.1", - "@jbrowse/plugin-menus": "^2.11.1", - "@jbrowse/plugin-rdf": "^2.11.1", - "@jbrowse/plugin-sequence": "^2.11.1", - "@jbrowse/plugin-spreadsheet-view": "^2.11.1", - "@jbrowse/plugin-sv-inspector": "^2.11.1", - "@jbrowse/plugin-svg": "^2.11.1", - "@jbrowse/plugin-trix": "^2.11.1", - "@jbrowse/plugin-variants": "^2.11.1", - "@jbrowse/plugin-wiggle": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", - "@jbrowse/web-core": "^2.11.1", + "@jbrowse/app-core": "^2.11.2", + "@jbrowse/core": "^2.11.2", + "@jbrowse/plugin-alignments": "^2.11.2", + "@jbrowse/plugin-arc": "^2.11.2", + "@jbrowse/plugin-authentication": "^2.11.2", + "@jbrowse/plugin-bed": "^2.11.2", + "@jbrowse/plugin-breakpoint-split-view": "^2.11.2", + "@jbrowse/plugin-circular-view": "^2.11.2", + "@jbrowse/plugin-comparative-adapters": "^2.11.2", + "@jbrowse/plugin-config": "^2.11.2", + "@jbrowse/plugin-data-management": "^2.11.2", + "@jbrowse/plugin-dotplot-view": "^2.11.2", + "@jbrowse/plugin-gccontent": "^2.11.2", + "@jbrowse/plugin-gff3": "^2.11.2", + "@jbrowse/plugin-grid-bookmark": "^2.11.2", + "@jbrowse/plugin-gtf": "^2.11.2", + "@jbrowse/plugin-hic": "^2.11.2", + "@jbrowse/plugin-legacy-jbrowse": "^2.11.2", + "@jbrowse/plugin-linear-comparative-view": "^2.11.2", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/plugin-lollipop": "^2.11.2", + "@jbrowse/plugin-menus": "^2.11.2", + "@jbrowse/plugin-rdf": "^2.11.2", + "@jbrowse/plugin-sequence": "^2.11.2", + "@jbrowse/plugin-spreadsheet-view": "^2.11.2", + "@jbrowse/plugin-sv-inspector": "^2.11.2", + "@jbrowse/plugin-svg": "^2.11.2", + "@jbrowse/plugin-trix": "^2.11.2", + "@jbrowse/plugin-variants": "^2.11.2", + "@jbrowse/plugin-wiggle": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", + "@jbrowse/web-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "base64-js": "^1.0.0", diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json index bab1c988da..176af52d12 100644 --- a/products/jbrowse-react-circular-genome-view/package.json +++ b/products/jbrowse-react-circular-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-circular-genome-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 circular genome view React component", "keywords": [ "jbrowse", @@ -41,17 +41,17 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.11.1", - "@jbrowse/embedded-core": "^2.11.1", - "@jbrowse/plugin-authentication": "^2.11.1", - "@jbrowse/plugin-circular-view": "^2.11.1", - "@jbrowse/plugin-config": "^2.11.1", - "@jbrowse/plugin-data-management": "^2.11.1", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/plugin-sequence": "^2.11.1", - "@jbrowse/plugin-variants": "^2.11.1", - "@jbrowse/plugin-wiggle": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", + "@jbrowse/core": "^2.11.2", + "@jbrowse/embedded-core": "^2.11.2", + "@jbrowse/plugin-authentication": "^2.11.2", + "@jbrowse/plugin-circular-view": "^2.11.2", + "@jbrowse/plugin-config": "^2.11.2", + "@jbrowse/plugin-data-management": "^2.11.2", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/plugin-sequence": "^2.11.2", + "@jbrowse/plugin-variants": "^2.11.2", + "@jbrowse/plugin-wiggle": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "mobx": "^6.6.0", diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json index a56abca43a..d07720a95f 100644 --- a/products/jbrowse-react-linear-genome-view/package.json +++ b/products/jbrowse-react-linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-linear-genome-view", - "version": "2.11.1", + "version": "2.11.2", "description": "JBrowse 2 linear genome view React component", "keywords": [ "jbrowse", @@ -48,25 +48,25 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.11.1", - "@jbrowse/embedded-core": "^2.11.1", - "@jbrowse/plugin-alignments": "^2.11.1", - "@jbrowse/plugin-arc": "^2.11.1", - "@jbrowse/plugin-authentication": "^2.11.1", - "@jbrowse/plugin-bed": "^2.11.1", - "@jbrowse/plugin-circular-view": "^2.11.1", - "@jbrowse/plugin-config": "^2.11.1", - "@jbrowse/plugin-data-management": "^2.11.1", - "@jbrowse/plugin-gccontent": "^2.11.1", - "@jbrowse/plugin-gff3": "^2.11.1", - "@jbrowse/plugin-legacy-jbrowse": "^2.11.1", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/plugin-sequence": "^2.11.1", - "@jbrowse/plugin-svg": "^2.11.1", - "@jbrowse/plugin-trix": "^2.11.1", - "@jbrowse/plugin-variants": "^2.11.1", - "@jbrowse/plugin-wiggle": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", + "@jbrowse/core": "^2.11.2", + "@jbrowse/embedded-core": "^2.11.2", + "@jbrowse/plugin-alignments": "^2.11.2", + "@jbrowse/plugin-arc": "^2.11.2", + "@jbrowse/plugin-authentication": "^2.11.2", + "@jbrowse/plugin-bed": "^2.11.2", + "@jbrowse/plugin-circular-view": "^2.11.2", + "@jbrowse/plugin-config": "^2.11.2", + "@jbrowse/plugin-data-management": "^2.11.2", + "@jbrowse/plugin-gccontent": "^2.11.2", + "@jbrowse/plugin-gff3": "^2.11.2", + "@jbrowse/plugin-legacy-jbrowse": "^2.11.2", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/plugin-sequence": "^2.11.2", + "@jbrowse/plugin-svg": "^2.11.2", + "@jbrowse/plugin-trix": "^2.11.2", + "@jbrowse/plugin-variants": "^2.11.2", + "@jbrowse/plugin-wiggle": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "mobx": "^6.6.0", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index 8dd54e42e9..818f8f847e 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "2.11.1", + "version": "2.11.2", "license": "Apache-2.0", "homepage": ".", "main": "build", @@ -15,38 +15,38 @@ }, "dependencies": { "@fontsource/roboto": "^5.0.2", - "@jbrowse/app-core": "^2.11.1", - "@jbrowse/core": "^2.11.1", - "@jbrowse/plugin-alignments": "^2.11.1", - "@jbrowse/plugin-arc": "^2.11.1", - "@jbrowse/plugin-authentication": "^2.11.1", - "@jbrowse/plugin-bed": "^2.11.1", - "@jbrowse/plugin-breakpoint-split-view": "^2.11.1", - "@jbrowse/plugin-circular-view": "^2.11.1", - "@jbrowse/plugin-comparative-adapters": "^2.11.1", - "@jbrowse/plugin-config": "^2.11.1", - "@jbrowse/plugin-data-management": "^2.11.1", - "@jbrowse/plugin-dotplot-view": "^2.11.1", - "@jbrowse/plugin-gccontent": "^2.11.1", - "@jbrowse/plugin-gff3": "^2.11.1", - "@jbrowse/plugin-grid-bookmark": "^2.11.1", - "@jbrowse/plugin-gtf": "^2.11.1", - "@jbrowse/plugin-hic": "^2.11.1", - "@jbrowse/plugin-legacy-jbrowse": "^2.11.1", - "@jbrowse/plugin-linear-comparative-view": "^2.11.1", - "@jbrowse/plugin-linear-genome-view": "^2.11.1", - "@jbrowse/plugin-lollipop": "^2.11.1", - "@jbrowse/plugin-menus": "^2.11.1", - "@jbrowse/plugin-rdf": "^2.11.1", - "@jbrowse/plugin-sequence": "^2.11.1", - "@jbrowse/plugin-spreadsheet-view": "^2.11.1", - "@jbrowse/plugin-sv-inspector": "^2.11.1", - "@jbrowse/plugin-svg": "^2.11.1", - "@jbrowse/plugin-trix": "^2.11.1", - "@jbrowse/plugin-variants": "^2.11.1", - "@jbrowse/plugin-wiggle": "^2.11.1", - "@jbrowse/product-core": "^2.11.1", - "@jbrowse/web-core": "^2.11.1", + "@jbrowse/app-core": "^2.11.2", + "@jbrowse/core": "^2.11.2", + "@jbrowse/plugin-alignments": "^2.11.2", + "@jbrowse/plugin-arc": "^2.11.2", + "@jbrowse/plugin-authentication": "^2.11.2", + "@jbrowse/plugin-bed": "^2.11.2", + "@jbrowse/plugin-breakpoint-split-view": "^2.11.2", + "@jbrowse/plugin-circular-view": "^2.11.2", + "@jbrowse/plugin-comparative-adapters": "^2.11.2", + "@jbrowse/plugin-config": "^2.11.2", + "@jbrowse/plugin-data-management": "^2.11.2", + "@jbrowse/plugin-dotplot-view": "^2.11.2", + "@jbrowse/plugin-gccontent": "^2.11.2", + "@jbrowse/plugin-gff3": "^2.11.2", + "@jbrowse/plugin-grid-bookmark": "^2.11.2", + "@jbrowse/plugin-gtf": "^2.11.2", + "@jbrowse/plugin-hic": "^2.11.2", + "@jbrowse/plugin-legacy-jbrowse": "^2.11.2", + "@jbrowse/plugin-linear-comparative-view": "^2.11.2", + "@jbrowse/plugin-linear-genome-view": "^2.11.2", + "@jbrowse/plugin-lollipop": "^2.11.2", + "@jbrowse/plugin-menus": "^2.11.2", + "@jbrowse/plugin-rdf": "^2.11.2", + "@jbrowse/plugin-sequence": "^2.11.2", + "@jbrowse/plugin-spreadsheet-view": "^2.11.2", + "@jbrowse/plugin-sv-inspector": "^2.11.2", + "@jbrowse/plugin-svg": "^2.11.2", + "@jbrowse/plugin-trix": "^2.11.2", + "@jbrowse/plugin-variants": "^2.11.2", + "@jbrowse/plugin-wiggle": "^2.11.2", + "@jbrowse/product-core": "^2.11.2", + "@jbrowse/web-core": "^2.11.2", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^7.0.0",