From 01323621c6c05beff65c52b4b5c8c1131eeb8280 Mon Sep 17 00:00:00 2001
From: Colin <colin.diesh@gmail.com>
Date: Sun, 21 Apr 2024 16:52:19 -0400
Subject: [PATCH] Use radio button

---
 .../BaseFeatureDetail/index.tsx               |  1 -
 .../SequenceFeatureDetails.tsx                |  5 ++-
 .../dialogs/SettingsDialog.tsx                | 32 +++++++++++++------
 .../SequenceFeatureDetails/index.tsx          |  4 +--
 .../__snapshots__/index.test.tsx.snap         | 24 ++------------
 .../src/GCContentAdapter/GCContentAdapter.ts  |  2 +-
 .../VariantFeatureWidget.test.tsx.snap        | 24 ++------------
 yarn.lock                                     | 12 +++----
 8 files changed, 36 insertions(+), 68 deletions(-)

diff --git a/packages/core/BaseFeatureWidget/BaseFeatureDetail/index.tsx b/packages/core/BaseFeatureWidget/BaseFeatureDetail/index.tsx
index bbf8696ad9c..f9b3f657265 100644
--- a/packages/core/BaseFeatureWidget/BaseFeatureDetail/index.tsx
+++ b/packages/core/BaseFeatureWidget/BaseFeatureDetail/index.tsx
@@ -21,7 +21,6 @@ import {
   getSession,
   assembleLocString,
   toLocale,
-  ParsedLocString,
   SimpleFeatureSerialized,
 } from '../../util'
 import { ErrorMessage } from '../../ui'
diff --git a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.tsx b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.tsx
index 59fb9a06316..a89d4a6da88 100644
--- a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.tsx
+++ b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.tsx
@@ -32,7 +32,6 @@ const useStyles = makeStyles()({
   formControl: {
     margin: 0,
     marginLeft: 4,
-    maxWidth: 180,
   },
 })
 
@@ -67,7 +66,7 @@ const SequenceFeatureDetails = observer(function ({
   )
 
   return (
-    <span>
+    <>
       <span>
         <FormControl className={classes.formControl}>
           <Select
@@ -216,7 +215,7 @@ const SequenceFeatureDetails = observer(function ({
           </Suspense>
         ) : null}
       </div>
-    </span>
+    </>
   )
 })
 
diff --git a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.tsx b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.tsx
index 98f4a952e4d..4d5262c5bb5 100644
--- a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.tsx
+++ b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.tsx
@@ -3,9 +3,12 @@ import {
   Button,
   DialogContent,
   DialogActions,
-  TextField,
-  Checkbox,
   FormControlLabel,
+  FormControl,
+  FormLabel,
+  Radio,
+  RadioGroup,
+  TextField,
 } from '@mui/material'
 import { Dialog } from '@jbrowse/core/ui'
 import { makeStyles } from 'tss-react/mui'
@@ -65,15 +68,24 @@ const SequenceFeatureSettingsDialog = observer(function ({
           />
         </div>
         <div>
-          <FormControlLabel
-            control={
-              <Checkbox
-                onChange={event => model.setUpperCaseCDS(event.target.checked)}
-                checked={model.upperCaseCDS}
+          <FormControl>
+            <FormLabel>Sequence capitalization</FormLabel>
+            <RadioGroup
+              value={model.upperCaseCDS ? 'cds' : 'unchanged'}
+              onChange={e => model.setUpperCaseCDS(e.target.value === 'cds')}
+            >
+              <FormControlLabel
+                value="cds"
+                control={<Radio />}
+                label="Capitalize CDS and lower case everything else"
               />
-            }
-            label="Upper case CDS, lower case everything else?"
-          />
+              <FormControlLabel
+                value="unchanged"
+                control={<Radio />}
+                label="Capitalization from reference genome sequence"
+              />
+            </RadioGroup>
+          </FormControl>
         </div>
       </DialogContent>
 
diff --git a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/index.tsx b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/index.tsx
index f00c1638cc8..b0bbf8da87c 100644
--- a/packages/core/BaseFeatureWidget/SequenceFeatureDetails/index.tsx
+++ b/packages/core/BaseFeatureWidget/SequenceFeatureDetails/index.tsx
@@ -1,3 +1 @@
-import SequenceFeaturePanel from './SequenceFeaturePanel'
-
-export { SequenceFeaturePanel as default }
+export { default } from './SequenceFeaturePanel'
diff --git a/plugins/alignments/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap b/plugins/alignments/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap
index da2408f5439..d2612a7876b 100644
--- a/plugins/alignments/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap
+++ b/plugins/alignments/src/AlignmentsFeatureDetail/__snapshots__/index.test.tsx.snap
@@ -283,35 +283,15 @@ exports[`open up a widget 1`] = `
                 <div
                   class="css-1lttu3w-container"
                 >
-                  <button
-                    class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary css-sghohy-MuiButtonBase-root-MuiButton-root"
-                    tabindex="0"
-                    type="button"
-                  >
-                    Show feature sequence
-                    <span
-                      class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
-                    />
-                  </button>
                   <div
                     class="MuiFormControl-root css-147opmv-MuiFormControl-root-formControl"
                   >
                     <button
-                      class="MuiButtonBase-root MuiIconButton-root MuiIconButton-sizeMedium css-78trlr-MuiButtonBase-root-MuiIconButton-root"
+                      class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary css-sghohy-MuiButtonBase-root-MuiButton-root"
                       tabindex="0"
                       type="button"
                     >
-                      <svg
-                        aria-hidden="true"
-                        class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
-                        data-testid="HelpIcon"
-                        focusable="false"
-                        viewBox="0 0 24 24"
-                      >
-                        <path
-                          d="M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2m1 17h-2v-2h2zm2.07-7.75-.9.92C13.45 12.9 13 13.5 13 15h-2v-.5c0-1.1.45-2.1 1.17-2.83l1.24-1.26c.37-.36.59-.86.59-1.41 0-1.1-.9-2-2-2s-2 .9-2 2H8c0-2.21 1.79-4 4-4s4 1.79 4 4c0 .88-.36 1.68-.93 2.25"
-                        />
-                      </svg>
+                      Show sequence
                       <span
                         class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
                       />
diff --git a/plugins/gccontent/src/GCContentAdapter/GCContentAdapter.ts b/plugins/gccontent/src/GCContentAdapter/GCContentAdapter.ts
index bed549a88f7..59d52ff5d6d 100644
--- a/plugins/gccontent/src/GCContentAdapter/GCContentAdapter.ts
+++ b/plugins/gccontent/src/GCContentAdapter/GCContentAdapter.ts
@@ -95,5 +95,5 @@ export default class GCContentAdapter extends BaseFeatureDataAdapter {
    * will not be needed for the foreseeable future and can be purged
    * from caches, etc
    */
-  public freeResources(/* { region } */) { }
+  public freeResources(/* { region } */) {}
 }
diff --git a/plugins/variants/src/VariantFeatureWidget/__snapshots__/VariantFeatureWidget.test.tsx.snap b/plugins/variants/src/VariantFeatureWidget/__snapshots__/VariantFeatureWidget.test.tsx.snap
index 78f198f1362..3e6671921ee 100644
--- a/plugins/variants/src/VariantFeatureWidget/__snapshots__/VariantFeatureWidget.test.tsx.snap
+++ b/plugins/variants/src/VariantFeatureWidget/__snapshots__/VariantFeatureWidget.test.tsx.snap
@@ -191,35 +191,15 @@ exports[`renders with just the required model elements 1`] = `
                 <div
                   class="css-1lttu3w-container"
                 >
-                  <button
-                    class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary css-sghohy-MuiButtonBase-root-MuiButton-root"
-                    tabindex="0"
-                    type="button"
-                  >
-                    Show feature sequence
-                    <span
-                      class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
-                    />
-                  </button>
                   <div
                     class="MuiFormControl-root css-147opmv-MuiFormControl-root-formControl"
                   >
                     <button
-                      class="MuiButtonBase-root MuiIconButton-root MuiIconButton-sizeMedium css-78trlr-MuiButtonBase-root-MuiIconButton-root"
+                      class="MuiButtonBase-root MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary MuiButton-root MuiButton-contained MuiButton-containedPrimary MuiButton-sizeMedium MuiButton-containedSizeMedium MuiButton-colorPrimary css-sghohy-MuiButtonBase-root-MuiButton-root"
                       tabindex="0"
                       type="button"
                     >
-                      <svg
-                        aria-hidden="true"
-                        class="MuiSvgIcon-root MuiSvgIcon-fontSizeMedium css-i4bv87-MuiSvgIcon-root"
-                        data-testid="HelpIcon"
-                        focusable="false"
-                        viewBox="0 0 24 24"
-                      >
-                        <path
-                          d="M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2m1 17h-2v-2h2zm2.07-7.75-.9.92C13.45 12.9 13 13.5 13 15h-2v-.5c0-1.1.45-2.1 1.17-2.83l1.24-1.26c.37-.36.59-.86.59-1.41 0-1.1-.9-2-2-2s-2 .9-2 2H8c0-2.21 1.79-4 4-4s4 1.79 4 4c0 .88-.36 1.68-.93 2.25"
-                        />
-                      </svg>
+                      Show sequence
                       <span
                         class="MuiTouchRipple-root css-8je8zh-MuiTouchRipple-root"
                       />
diff --git a/yarn.lock b/yarn.lock
index 99419064469..02a8ad82ff2 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -6909,9 +6909,9 @@ caniuse-api@^3.0.0:
     lodash.uniq "^4.5.0"
 
 caniuse-lite@^1.0.0, caniuse-lite@^1.0.30001587:
-  version "1.0.30001611"
-  resolved "https://registry.yarnpkg.com/caniuse-lite/-/caniuse-lite-1.0.30001611.tgz#4dbe78935b65851c2d2df1868af39f709a93a96e"
-  integrity sha512-19NuN1/3PjA3QI8Eki55N8my4LzfkMCRLgCVfrl/slbSAchQfV0+GwjPrK3rq37As4UCLlM/DHajbKkAqbv92Q==
+  version "1.0.30001612"
+  resolved "https://registry.yarnpkg.com/caniuse-lite/-/caniuse-lite-1.0.30001612.tgz#d34248b4ec1f117b70b24ad9ee04c90e0b8a14ae"
+  integrity sha512-lFgnZ07UhaCcsSZgWW0K5j4e69dK1u/ltrL9lTUiFOwNHs12S3UMIEYgBV0Z6C6hRDev7iRnMzzYmKabYdXF9g==
 
 canvas-sequencer@^3.1.0:
   version "3.1.0"
@@ -13544,9 +13544,9 @@ nth-check@^2.0.1:
     boolbase "^1.0.0"
 
 nwsapi@^2.2.2, nwsapi@^2.2.7:
-  version "2.2.8"
-  resolved "https://registry.yarnpkg.com/nwsapi/-/nwsapi-2.2.8.tgz#a3552e65b74bf8cc89d0480c4132b61dbe54eccf"
-  integrity sha512-GU/I3lTEFQ9mkEm07Q7HvdRajss8E1wVMGOk3/lHl60QPseG+B3BIQY+JUjYWw7gF8cCeoQCXd4N7DB7avw0Rg==
+  version "2.2.9"
+  resolved "https://registry.yarnpkg.com/nwsapi/-/nwsapi-2.2.9.tgz#7f3303218372db2e9f27c27766bcfc59ae7e61c6"
+  integrity sha512-2f3F0SEEer8bBu0dsNCFF50N0cTThV1nWFYcEYFZttdW0lDAoybv9cQoK7X7/68Z89S7FoRrVjP1LPX4XRf9vg==
 
 nx@18.3.3, "nx@>=17.1.2 < 19":
   version "18.3.3"