feature for range is not getting all genes in the track service

[nathandunn]

From https://agr-jira.atlassian.net/browse/AGR-2216?jql=text%20~%20%22Hand2%22

Should get all transcripts within the range, but seems to miss some from a different gene:

https://build.alliancegenome.org/apollo/track/mouse/All%20Genes/8:57320700..57324800.json?name=Hand2%3Csup%3Etm2Eno%3C/sup%3E&name=Hand2%3Csup%3EEDE%3C/sup%3E&name=MGI:3838372?ignoreCache=true

https://build.alliancegenome.org/jbrowse/?data=data%2FMus%20musculus&tracks=Variants%2CAll%20Genes%2CMultiple-Variant%20Alleles&highlight=&lookupSymbol=Hand2%3Csup%3Etm2Eno%3C%2Fsup%3E&loc=8%3A57318170..57325944

The return string just contains the 2 for HandOS:

[{"sourceUrl":"http://build.alliancegenome.org/apollo/track/mouse/All Genes/8/Hand2.json","strand":1,"children":[{"strand":1,"children":[{"strand":1,"source":"NCBI","id":"MGI_C57BL6J_103580_exon_4","fmin":57320982,"type":"exon","fmax":57322461,"seqId":"8"},{"strand":1,"source":"NCBI","id":"MGI_C57BL6J_103580_exon_3","fmin":57323761,"type":"exon","fmax":57324517,"seqId":"8"},{"phase":0,"strand":1,"name":"NP_034532.3","source":"NCBI","id":"MGI_C57BL6J_103580_cds_2","fmin":57321906,"type":"CDS","fmax":57322461,"seqId":"8"},{"phase":0,"strand":1,"name":"NP_034532.3","source":"NCBI","id":"MGI_C57BL6J_103580_cds_2","fmin":57323761,"type":"CDS","fmax":57323860,"seqId":"8"}],"name":"NM_010402.4","source":"NCBI","id":"MGI_C57BL6J_103580_transcript_2","fmin":57320982,"type":"mRNA","fmax":57324517,"seqId":"8"},{"strand":1,"children":[{"strand":1,"name":"ENSMUSE00000267757","source":"ENSEMBL","id":"MGI_C57BL6J_103580_exon_2","fmin":57320982,"type":"exon","fmax":57322461,"seqId":"8"},{"phase":0,"strand":1,"name":"ENSMUSP00000044983","source":"ENSEMBL","id":"MGI_C57BL6J_103580_cds_1","fmin":57321906,"type":"CDS","fmax":57322461,"seqId":"8"},{"phase":0,"strand":1,"name":"ENSMUSP00000044983","source":"ENSEMBL","id":"MGI_C57BL6J_103580_cds_1","fmin":57323761,"type":"CDS","fmax":57323860,"seqId":"8"},{"strand":1,"name":"ENSMUSE00000344779","source":"ENSEMBL","id":"MGI_C57BL6J_103580_exon_1","fmin":57323761,"type":"exon","fmax":57324633,"seqId":"8"}],"name":"ENSMUST00000040104","source":"ENSEMBL","id":"MGI_C57BL6J_103580_transcript_1","fmin":57320982,"type":"mRNA","fmax":57324633,"seqId":"8"}],"name":"Hand2","source":"MGI","id":"MGI_C57BL6J_103580","fmin":57320982,"type":"gene","fmax":57324633,"seqId":"8"}]

There are 3 cases. the first one is here:

Note that the transcript table contains ALL the ones as does JBrowse:

https://build.alliancegenome.org/allele/MGI:3838372

vs

[nathandunn]

Case 2 for

https://build.alliancegenome.org/allele/FB:FBal0212726

vs

[nathandunn]

For Case 3: , the overlapping gene is too large, so we don't display:

so what is being shown is correct: