preparing release 2.2.0

Author: clemaitre

CHANGELOG.md

@@ -3,6 +3,18 @@
 --------------------------------------------------------------------------------
 ## [Unreleased]
 
+--------------------------------------------------------------------------------
+## [2.2.0] - 2018-07-06
+
+* A nice novel feature: insertion variants are now output in vcf format! and with left-normalization (ie. if several equivalent positions are possible for a given insertion event, the left-most is output and the size of the ambiguity is indicated).
+* Some improvements and bug fixes:
+	* faster graph loading in fill module;
+	* if multiple inserted sequence solutions, better handling of very similar ones, the number of output solutions can be reduced;
+	* better handling of N stretches in the reference genome, resulting in less False Positive calls in find module;
+	* better recall for very small heterozygous insertion variants (bug fix when the insertion is size smaller or equal than the ambiguity size).
+	* a CI simple test for the Fill module with option `-contig`.
+	
+
 --------------------------------------------------------------------------------
 ## [2.1.0] - 2018-06-13
 

CMakeLists.txt

@@ -27,7 +27,7 @@ cmake_minimum_required(VERSION 3.1)
 ################################################################################
 # The default version number is the latest official build
 SET (gatb-tool_VERSION_MAJOR 2)
-SET (gatb-tool_VERSION_MINOR 1)
+SET (gatb-tool_VERSION_MINOR 2)
 SET (gatb-tool_VERSION_PATCH 0)
 
 # But, it is possible to define another release number during a local build

src/main.cpp

@@ -26,7 +26,7 @@
 
 using namespace std;
 
-static const char* MTG_VERSION = "2.1.0";
+static const char* MTG_VERSION = "2.2.0";
 
 static const char* STR_FIND        = "find";
 static const char* STR_FILL = "fill";