These tools are used to make searching and extracting data easier
pip install -r requirements.txt
Requirements
Search file
andMetadata file
must be intsv
formatSearch file
must contain the headerids
as shown below
ids |
---|
search term 1 |
search term 2 |
search term 3 |
... |
search term n |
Usage
python tools/search_tool.py --metadata <Location of metadata file> --search <Location of search file>
Help
python tools/search_tool.py --help
Requirements
Selected file
must be intsv
formatSelected file
must contain the headerids
as shown below
ids |
---|
header 1 |
header 2 |
header 3 |
... |
header n |
Usage
python tools/split_sequence_tool.py --fasta <Location of fasta file> --selected <Location of selected header file>
Help
python tools/split_sequence_tool.py --help