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Could sei accept sequence (fasta or character) as input? #2

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WeiCSong opened this issue Jan 7, 2022 · 1 comment
Closed

Could sei accept sequence (fasta or character) as input? #2

WeiCSong opened this issue Jan 7, 2022 · 1 comment

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@WeiCSong
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WeiCSong commented Jan 7, 2022

Hi sei developer, thanks for the great tool! I notice that the provided pipeline aims to predict delta scores of variants, whereas it is also desirable to directly predict scores for a sequence. I'm not sure which script takes a sequence as input and outputs the score and class of it, and would also like to know whether it is possible to directly input a fasta file to it. Could you help me with this issue? Thank you very much!

@kathyxchen
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Apologies for missing this but and appreciate you reaching out via email for your question. For anyone else with a similar idea, we now have a branch vep_seq with some preliminary support for sequence inputs.

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