From 138731737baffe0f0c78a9241dba83952f0d6318 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 17:36:28 +0100 Subject: [PATCH 01/21] move to uv --- .github/workflows/pyfuppes-ci.yml | 70 + .github/workflows/pyfuppes-tests.yml | 52 - .pre-commit-config.yaml | 8 +- CHANGELOG.md | 3 + poetry.lock | 3331 -------------------------- pyproject.toml | 63 +- tests/__init__.py | 0 uv.lock | 2102 ++++++++++++++++ 8 files changed, 2209 insertions(+), 3420 deletions(-) create mode 100644 .github/workflows/pyfuppes-ci.yml delete mode 100644 .github/workflows/pyfuppes-tests.yml delete mode 100644 poetry.lock create mode 100644 tests/__init__.py create mode 100644 uv.lock diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml new file mode 100644 index 0000000..3aac6f3 --- /dev/null +++ b/.github/workflows/pyfuppes-ci.yml @@ -0,0 +1,70 @@ +name: pyfuppes-tests + +on: + push: + tags: + - "v*" + pull_request: + branches: [master] + +jobs: + build: + strategy: + fail-fast: true + matrix: + python-version: ["3.10", "3.11", "3.12"] + os: [ubuntu-latest, macos-latest, windows-latest] + runs-on: ${{matrix.os}} + steps: + - uses: actions/checkout@v4 + + - name: Install uv and set the Python version + uses: astral-sh/setup-uv@v4 + with: + python-version: ${{ matrix.python-version }} + enable-cache: true + cache-dependency-glob: "uv.lock" # invalidate cache if lockfile changes + + - name: Install the project + run: uv sync --all-extras --dev + + - name: Run black formatting + run: uv run black . --color --diff --check + + - name: Run ruff ckecks + run: uv run ruff ckeck + + - name: Run tests + run: uv run pytest tests + + # steps: + # - uses: actions/checkout@main + # - name: Set up Python ${{ matrix.python-version }} + # uses: actions/setup-python@main + # with: + # python-version: ${{ matrix.python-version }} + # - name: Install Poetry # windows won't work since it does not offer poetry + # uses: snok/install-poetry@main + # - name: Install dependencies + # shell: bash + # working-directory: ./pyfuppes + # run: | + # poetry install --no-interaction --no-ansi -vv + # - name: Lint with flake8 + # #shell: bash + # #working-directory: ./pyfuppes + # run: | + # # stop the build if there are Python syntax errors or undefined names + # poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics + # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide + # poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics + # - name: Run Black8 formatting + # #shell: bash + # #working-directory: ./pyfuppes + # run: | + # poetry run black . --color --diff --check + # - name: Test with pytest + # #shell: bash + # #working-directory: ./pyfuppes + # run: | + # poetry run pytest . diff --git a/.github/workflows/pyfuppes-tests.yml b/.github/workflows/pyfuppes-tests.yml deleted file mode 100644 index 37f4403..0000000 --- a/.github/workflows/pyfuppes-tests.yml +++ /dev/null @@ -1,52 +0,0 @@ -# This workflow will install Python dependencies, run tests and lint with a variety of Python versions -# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions - -name: pyfuppes-tests - -on: - push: - # branches: [ master ] - tags: - - "*" - pull_request: - branches: [master] - -jobs: - build: - strategy: - fail-fast: false - matrix: - python-version: ["3.10", "3.11", "3.12"] - os: [ubuntu-latest] #, macos-latest, windows-latest] - runs-on: ${{matrix.os}} - steps: - - uses: actions/checkout@main - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@main - with: - python-version: ${{ matrix.python-version }} - - name: Install Poetry # windows won't work since it does not offer poetry - uses: snok/install-poetry@main - - name: Install dependencies - shell: bash - working-directory: ./pyfuppes - run: | - poetry install --no-interaction --no-ansi -vv - - name: Lint with flake8 - #shell: bash - #working-directory: ./pyfuppes - run: | - # stop the build if there are Python syntax errors or undefined names - poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics - # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide - poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - - name: Run Black8 formatting - #shell: bash - #working-directory: ./pyfuppes - run: | - poetry run black . --color --diff --check - - name: Test with pytest - #shell: bash - #working-directory: ./pyfuppes - run: | - poetry run pytest . diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1eec678..97b2913 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,24 +1,24 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-yaml - id: check-toml - id: end-of-file-fixer - id: trailing-whitespace - repo: https://github.com/psf/black - rev: 24.4.2 + rev: 24.10.0 hooks: - id: black - repo: https://github.com/charliermarsh/ruff-pre-commit - rev: "v0.4.2" + rev: "v0.8.4" hooks: - id: ruff - repo: local hooks: - id: pytest name: pytest - stages: [commit] + stages: [pre-commit] types: [python] entry: pytest language: system diff --git a/CHANGELOG.md b/CHANGELOG.md index cac80f6..2a726ba 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,8 +13,11 @@ Types of changes ## Unreleased +## v0.5.2 (xxxx-xx-xx) + ### Changed +- move from pyenv / poetry to uv - 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[PATCH 03/21] try without init in test dir --- tests/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) delete mode 100644 tests/__init__.py diff --git a/tests/__init__.py b/tests/__init__.py deleted file mode 100644 index e69de29..0000000 From f3b44234e802f3730d30cc450c9eb4e8498808d3 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 17:49:03 +0100 Subject: [PATCH 04/21] next try --- .github/workflows/pyfuppes-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 5fb05ee..f2dc07d 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -35,7 +35,7 @@ jobs: run: uv run ruff check - name: Run tests - run: uv run pytest tests + run: uv run pytest . # steps: # - uses: actions/checkout@main From 7b7d286666251cdc0df7e61a4f235e4bc554ed26 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 17:53:20 +0100 Subject: [PATCH 05/21] try #3 --- .github/workflows/pyfuppes-ci.yml | 2 +- pyproject.toml | 5 ++++- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index f2dc07d..5fb05ee 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -35,7 +35,7 @@ jobs: run: uv run ruff check - name: Run tests - run: uv run pytest . + run: uv run pytest tests # steps: # - uses: actions/checkout@main diff --git a/pyproject.toml b/pyproject.toml index ecd439c..72dddf8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,4 +45,7 @@ lint.extend-select = ["I", "C4", "SIM"] # "C4" : comprehensions # "TCH" : type checking optimizations # "SIM" : code simplifications -target-version = "py39" +target-version = "py310" + +[tool.pytest.ini_options] +pythonpath = ["."] From 3e5561dba6ec89d0d778174c763e89b17c81658a Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 17:57:15 +0100 Subject: [PATCH 06/21] try #4 --- pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pyproject.toml b/pyproject.toml index 72dddf8..5d0fb64 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,3 +49,4 @@ target-version = "py310" [tool.pytest.ini_options] pythonpath = ["."] +addopts = ["--import-mode=importlib"] From 836d90e706b027b6502fb9ae91781b54932c2aba Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:00:10 +0100 Subject: [PATCH 07/21] try #5 --- tests/__init__.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 tests/__init__.py diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 From 3d54070193ff7f1c5b3c9da48a4acdfe411d3b14 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:02:25 +0100 Subject: [PATCH 08/21] try #6 --- .github/workflows/pyfuppes-ci.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 5fb05ee..b78308e 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -35,7 +35,9 @@ jobs: run: uv run ruff check - name: Run tests - run: uv run pytest tests + run: | + . .venv/bin/activate + uv run pytest tests # steps: # - uses: actions/checkout@main From 355061de92af925886b4b11174df25739eaf446a Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:05:12 +0100 Subject: [PATCH 09/21] try #7 --- .github/workflows/pyfuppes-ci.yml | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index b78308e..199f006 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -22,8 +22,8 @@ jobs: uses: astral-sh/setup-uv@v4 with: python-version: ${{ matrix.python-version }} - enable-cache: true - cache-dependency-glob: "uv.lock" # invalidate cache if lockfile changes + enable-cache: false + # cache-dependency-glob: "uv.lock" # invalidate cache if lockfile changes - name: Install the project run: uv sync --all-extras --dev @@ -35,9 +35,7 @@ jobs: run: uv run ruff check - name: Run tests - run: | - . .venv/bin/activate - uv run pytest tests + run: uv run pytest tests # steps: # - uses: actions/checkout@main From 15a93ddbb8f9489bed362eb82d043d439ae76e32 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:08:01 +0100 Subject: [PATCH 10/21] try #8 --- .github/workflows/pyfuppes-ci.yml | 2 +- tests/__init__.py | 0 2 files changed, 1 insertion(+), 1 deletion(-) delete mode 100644 tests/__init__.py diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 199f006..12d8b36 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -35,7 +35,7 @@ jobs: run: uv run ruff check - name: Run tests - run: uv run pytest tests + run: uv run pytest . # steps: # - uses: actions/checkout@main diff --git a/tests/__init__.py b/tests/__init__.py deleted file mode 100644 index e69de29..0000000 From c1f3281ec4b991bda3e6a65790f61eb47c4dbc62 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:10:41 +0100 Subject: [PATCH 11/21] try #9 --- {pyfuppes => src}/__init__.py | 0 {pyfuppes => src}/avgbinmap.py | 0 {pyfuppes => src}/filters.py | 0 {pyfuppes => src}/geo.py | 0 {pyfuppes => src}/interpolate.py | 0 {pyfuppes => src}/misc.py | 0 {pyfuppes => src}/monotonicity.py | 0 {pyfuppes => src}/na1001.py | 0 {pyfuppes => src}/na1001_backend/__init__.py | 0 {pyfuppes => src}/na1001_backend/nasa_ames_1001_rw.py | 0 {pyfuppes => src}/na1001_backend/nasa_ames_1001_tools.py | 0 {pyfuppes => src}/numberstring.py | 0 {pyfuppes => src}/plottools.py | 0 {pyfuppes => src}/signalsteps.py | 0 {pyfuppes => src}/timeconversion.py | 0 {pyfuppes => src}/timecorr.py | 0 {pyfuppes => src}/txt2dict.py | 0 {pyfuppes => src}/v25.py | 0 {pyfuppes => src}/v25_config/v25_data_cfg.toml | 0 19 files changed, 0 insertions(+), 0 deletions(-) rename {pyfuppes => src}/__init__.py (100%) rename {pyfuppes => src}/avgbinmap.py (100%) rename {pyfuppes => src}/filters.py (100%) rename {pyfuppes => src}/geo.py (100%) rename {pyfuppes => src}/interpolate.py (100%) rename {pyfuppes => src}/misc.py (100%) rename {pyfuppes => src}/monotonicity.py (100%) rename {pyfuppes => src}/na1001.py (100%) rename {pyfuppes => src}/na1001_backend/__init__.py (100%) rename {pyfuppes => src}/na1001_backend/nasa_ames_1001_rw.py (100%) rename {pyfuppes => src}/na1001_backend/nasa_ames_1001_tools.py (100%) rename {pyfuppes => src}/numberstring.py (100%) rename {pyfuppes => src}/plottools.py (100%) rename {pyfuppes => src}/signalsteps.py (100%) rename {pyfuppes => src}/timeconversion.py (100%) rename {pyfuppes => src}/timecorr.py (100%) rename {pyfuppes => src}/txt2dict.py (100%) rename {pyfuppes => src}/v25.py (100%) rename {pyfuppes => src}/v25_config/v25_data_cfg.toml (100%) diff --git a/pyfuppes/__init__.py b/src/__init__.py similarity index 100% rename from pyfuppes/__init__.py rename to src/__init__.py diff --git a/pyfuppes/avgbinmap.py b/src/avgbinmap.py similarity index 100% rename from pyfuppes/avgbinmap.py rename to src/avgbinmap.py diff --git a/pyfuppes/filters.py b/src/filters.py similarity index 100% rename from pyfuppes/filters.py rename to src/filters.py diff --git a/pyfuppes/geo.py b/src/geo.py similarity index 100% rename from pyfuppes/geo.py rename to src/geo.py diff --git a/pyfuppes/interpolate.py b/src/interpolate.py similarity index 100% rename from pyfuppes/interpolate.py rename to src/interpolate.py diff --git a/pyfuppes/misc.py b/src/misc.py similarity index 100% rename from pyfuppes/misc.py rename to src/misc.py diff --git a/pyfuppes/monotonicity.py b/src/monotonicity.py similarity index 100% rename from pyfuppes/monotonicity.py rename to src/monotonicity.py diff --git a/pyfuppes/na1001.py b/src/na1001.py similarity index 100% rename from pyfuppes/na1001.py rename to src/na1001.py diff --git a/pyfuppes/na1001_backend/__init__.py b/src/na1001_backend/__init__.py similarity index 100% rename from pyfuppes/na1001_backend/__init__.py rename to src/na1001_backend/__init__.py diff --git a/pyfuppes/na1001_backend/nasa_ames_1001_rw.py b/src/na1001_backend/nasa_ames_1001_rw.py similarity index 100% rename from pyfuppes/na1001_backend/nasa_ames_1001_rw.py rename to src/na1001_backend/nasa_ames_1001_rw.py diff --git a/pyfuppes/na1001_backend/nasa_ames_1001_tools.py b/src/na1001_backend/nasa_ames_1001_tools.py similarity index 100% rename from pyfuppes/na1001_backend/nasa_ames_1001_tools.py rename to src/na1001_backend/nasa_ames_1001_tools.py diff --git a/pyfuppes/numberstring.py b/src/numberstring.py similarity index 100% rename from pyfuppes/numberstring.py rename to src/numberstring.py diff --git a/pyfuppes/plottools.py b/src/plottools.py similarity index 100% rename from pyfuppes/plottools.py rename to src/plottools.py diff --git a/pyfuppes/signalsteps.py b/src/signalsteps.py similarity index 100% rename from pyfuppes/signalsteps.py rename to src/signalsteps.py diff --git a/pyfuppes/timeconversion.py b/src/timeconversion.py similarity index 100% rename from pyfuppes/timeconversion.py rename to src/timeconversion.py diff --git a/pyfuppes/timecorr.py b/src/timecorr.py similarity index 100% rename from pyfuppes/timecorr.py rename to src/timecorr.py diff --git a/pyfuppes/txt2dict.py b/src/txt2dict.py similarity index 100% rename from pyfuppes/txt2dict.py rename to src/txt2dict.py diff --git a/pyfuppes/v25.py b/src/v25.py similarity index 100% rename from pyfuppes/v25.py rename to src/v25.py diff --git a/pyfuppes/v25_config/v25_data_cfg.toml b/src/v25_config/v25_data_cfg.toml similarity index 100% rename from pyfuppes/v25_config/v25_data_cfg.toml rename to src/v25_config/v25_data_cfg.toml From 914659952bfb5bc8864ccb98751cd9970c8754d4 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:12:45 +0100 Subject: [PATCH 12/21] try #10 --- src/v25.py | 1 - tests/test_avgbin.py | 1 - tests/test_filters.py | 1 - tests/test_geo.py | 1 - tests/test_interpolate.py | 1 - tests/test_misc.py | 1 - tests/test_na1001.py | 1 - tests/test_timeconversion.py | 1 - tests/test_timecorr.py | 1 - 9 files changed, 9 deletions(-) diff --git a/src/v25.py b/src/v25.py index 4c43418..c762f65 100644 --- a/src/v25.py +++ b/src/v25.py @@ -9,7 +9,6 @@ from typing import Iterator, Optional, Union import tomli as toml_r - from pyfuppes.misc import insensitive_pattern, to_list_of_Path from pyfuppes.txt2dict import txt_2_dict diff --git a/tests/test_avgbin.py b/tests/test_avgbin.py index 65c22aa..213ce09 100644 --- a/tests/test_avgbin.py +++ b/tests/test_avgbin.py @@ -3,7 +3,6 @@ import unittest import numpy as np - from pyfuppes import avgbinmap diff --git a/tests/test_filters.py b/tests/test_filters.py index 118e9a8..0eeb624 100644 --- a/tests/test_filters.py +++ b/tests/test_filters.py @@ -3,7 +3,6 @@ import unittest import numpy as np - from pyfuppes import filters diff --git a/tests/test_geo.py b/tests/test_geo.py index 5cac00e..e53fb74 100644 --- a/tests/test_geo.py +++ b/tests/test_geo.py @@ -4,7 +4,6 @@ from datetime import datetime, timezone import numpy as np - from pyfuppes import geo diff --git a/tests/test_interpolate.py b/tests/test_interpolate.py index 5c4ecfe..691a0ab 100644 --- a/tests/test_interpolate.py +++ b/tests/test_interpolate.py @@ -6,7 +6,6 @@ import polars as pl from pandas import testing as pdtest from polars.testing import assert_series_equal - from pyfuppes import interpolate diff --git a/tests/test_misc.py b/tests/test_misc.py index 0d22933..1323fc3 100644 --- a/tests/test_misc.py +++ b/tests/test_misc.py @@ -4,7 +4,6 @@ from pathlib import Path import numpy as np - from pyfuppes import misc diff --git a/tests/test_na1001.py b/tests/test_na1001.py index b42eaaa..820cd41 100644 --- a/tests/test_na1001.py +++ b/tests/test_na1001.py @@ -5,7 +5,6 @@ from pathlib import Path import polars as pl - from pyfuppes.na1001 import FFI1001 as na1001 try: diff --git a/tests/test_timeconversion.py b/tests/test_timeconversion.py index 70eed36..649a1aa 100644 --- a/tests/test_timeconversion.py +++ b/tests/test_timeconversion.py @@ -6,7 +6,6 @@ import numpy as np import pandas as pd import xarray as xr - from pyfuppes import timeconversion diff --git a/tests/test_timecorr.py b/tests/test_timecorr.py index 89e3a07..642ed13 100644 --- a/tests/test_timecorr.py +++ b/tests/test_timecorr.py @@ -5,7 +5,6 @@ import numpy as np import polars as pl from polars.testing import assert_frame_not_equal - from pyfuppes import timecorr From cf86d009558011df3270f88f12edc78d097b0f3d Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:14:18 +0100 Subject: [PATCH 13/21] try #11 --- .github/workflows/pyfuppes-ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 12d8b36..32ce74b 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -12,8 +12,8 @@ jobs: strategy: fail-fast: true matrix: - python-version: ["3.10", "3.11", "3.12"] - os: [ubuntu-latest, macos-latest, windows-latest] + python-version: ["3.12"] # ["3.10", "3.11", "3.12"] + os: [ubuntu-latest] # , macos-latest, windows-latest] runs-on: ${{matrix.os}} steps: - uses: actions/checkout@v4 From bb0835ec025d05b40bfce8940a776b2943ea463b Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:24:48 +0100 Subject: [PATCH 14/21] try #12 --- .github/workflows/pyfuppes-ci.yml | 6 +++--- {src => pyfuppes}/__init__.py | 0 {src => pyfuppes}/avgbinmap.py | 0 {src => pyfuppes}/filters.py | 0 {src => pyfuppes}/geo.py | 0 {src => pyfuppes}/interpolate.py | 0 {src => pyfuppes}/misc.py | 0 {src => pyfuppes}/monotonicity.py | 0 {src => pyfuppes}/na1001.py | 0 {src => pyfuppes}/na1001_backend/__init__.py | 0 {src => pyfuppes}/na1001_backend/nasa_ames_1001_rw.py | 0 {src => pyfuppes}/na1001_backend/nasa_ames_1001_tools.py | 0 {src => pyfuppes}/numberstring.py | 0 {src => pyfuppes}/plottools.py | 0 {src => pyfuppes}/signalsteps.py | 0 {src => pyfuppes}/timeconversion.py | 0 {src => pyfuppes}/timecorr.py | 0 {src => pyfuppes}/txt2dict.py | 0 {src => pyfuppes}/v25.py | 0 {src => pyfuppes}/v25_config/v25_data_cfg.toml | 0 pyproject.toml | 6 +++++- tests/__init__.py | 1 + uv.lock | 2 +- 23 files changed, 10 insertions(+), 5 deletions(-) rename {src => pyfuppes}/__init__.py (100%) rename {src => pyfuppes}/avgbinmap.py (100%) rename {src => pyfuppes}/filters.py (100%) rename {src => pyfuppes}/geo.py (100%) rename {src => pyfuppes}/interpolate.py (100%) rename {src => pyfuppes}/misc.py (100%) rename {src => pyfuppes}/monotonicity.py (100%) rename {src => pyfuppes}/na1001.py (100%) rename {src => pyfuppes}/na1001_backend/__init__.py (100%) rename {src => pyfuppes}/na1001_backend/nasa_ames_1001_rw.py (100%) rename {src => pyfuppes}/na1001_backend/nasa_ames_1001_tools.py (100%) rename {src => pyfuppes}/numberstring.py (100%) rename {src => pyfuppes}/plottools.py (100%) rename {src => pyfuppes}/signalsteps.py (100%) rename {src => pyfuppes}/timeconversion.py (100%) rename {src => pyfuppes}/timecorr.py (100%) rename {src => pyfuppes}/txt2dict.py (100%) rename {src => pyfuppes}/v25.py (100%) rename {src => pyfuppes}/v25_config/v25_data_cfg.toml (100%) create mode 100644 tests/__init__.py diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 32ce74b..de74363 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -22,8 +22,8 @@ jobs: uses: astral-sh/setup-uv@v4 with: python-version: ${{ matrix.python-version }} - enable-cache: false - # cache-dependency-glob: "uv.lock" # invalidate cache if lockfile changes + enable-cache: true + cache-dependency-glob: "uv.lock" # invalidate cache if lockfile changes - name: Install the project run: uv sync --all-extras --dev @@ -35,7 +35,7 @@ jobs: run: uv run ruff check - name: Run tests - run: uv run pytest . + run: uv run -m pytest # steps: # - uses: actions/checkout@main diff --git a/src/__init__.py b/pyfuppes/__init__.py similarity index 100% rename from src/__init__.py rename to pyfuppes/__init__.py diff --git a/src/avgbinmap.py b/pyfuppes/avgbinmap.py similarity index 100% rename from src/avgbinmap.py rename to pyfuppes/avgbinmap.py diff --git a/src/filters.py b/pyfuppes/filters.py similarity index 100% rename from src/filters.py rename to pyfuppes/filters.py diff --git a/src/geo.py b/pyfuppes/geo.py similarity index 100% rename from src/geo.py rename to pyfuppes/geo.py diff --git a/src/interpolate.py b/pyfuppes/interpolate.py similarity index 100% rename from src/interpolate.py rename to pyfuppes/interpolate.py diff --git a/src/misc.py b/pyfuppes/misc.py similarity index 100% rename from src/misc.py rename to pyfuppes/misc.py diff --git a/src/monotonicity.py b/pyfuppes/monotonicity.py similarity index 100% rename from src/monotonicity.py rename to pyfuppes/monotonicity.py diff --git a/src/na1001.py b/pyfuppes/na1001.py similarity index 100% rename from src/na1001.py rename to pyfuppes/na1001.py diff --git a/src/na1001_backend/__init__.py b/pyfuppes/na1001_backend/__init__.py similarity index 100% rename from src/na1001_backend/__init__.py rename to pyfuppes/na1001_backend/__init__.py diff --git a/src/na1001_backend/nasa_ames_1001_rw.py b/pyfuppes/na1001_backend/nasa_ames_1001_rw.py similarity index 100% rename from src/na1001_backend/nasa_ames_1001_rw.py rename to pyfuppes/na1001_backend/nasa_ames_1001_rw.py diff --git a/src/na1001_backend/nasa_ames_1001_tools.py b/pyfuppes/na1001_backend/nasa_ames_1001_tools.py similarity index 100% rename from src/na1001_backend/nasa_ames_1001_tools.py rename to pyfuppes/na1001_backend/nasa_ames_1001_tools.py diff --git a/src/numberstring.py b/pyfuppes/numberstring.py similarity index 100% rename from src/numberstring.py rename to pyfuppes/numberstring.py diff --git a/src/plottools.py b/pyfuppes/plottools.py similarity index 100% rename from src/plottools.py rename to pyfuppes/plottools.py diff --git a/src/signalsteps.py b/pyfuppes/signalsteps.py similarity index 100% rename from src/signalsteps.py rename to pyfuppes/signalsteps.py diff --git a/src/timeconversion.py b/pyfuppes/timeconversion.py similarity index 100% rename from src/timeconversion.py rename to pyfuppes/timeconversion.py diff --git a/src/timecorr.py b/pyfuppes/timecorr.py similarity index 100% rename from src/timecorr.py rename to pyfuppes/timecorr.py diff --git a/src/txt2dict.py b/pyfuppes/txt2dict.py similarity index 100% rename from src/txt2dict.py rename to pyfuppes/txt2dict.py diff --git a/src/v25.py b/pyfuppes/v25.py similarity index 100% rename from src/v25.py rename to pyfuppes/v25.py diff --git a/src/v25_config/v25_data_cfg.toml b/pyfuppes/v25_config/v25_data_cfg.toml similarity index 100% rename from src/v25_config/v25_data_cfg.toml rename to pyfuppes/v25_config/v25_data_cfg.toml diff --git a/pyproject.toml b/pyproject.toml index 5d0fb64..00a4e59 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -48,5 +48,9 @@ lint.extend-select = ["I", "C4", "SIM"] target-version = "py310" [tool.pytest.ini_options] -pythonpath = ["."] addopts = ["--import-mode=importlib"] +pythonpath = ["."] + +[build-system] +requires = ['setuptools'] +build-backend = 'setuptools.build_meta' diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1 @@ + diff --git a/uv.lock b/uv.lock index c10158e..cf7645e 100644 --- a/uv.lock +++ b/uv.lock @@ -1357,7 +1357,7 @@ wheels = [ [[package]] name = "pyfuppes" version = "0.5.1" -source = { virtual = "." } +source = { editable = "." } dependencies = [ { name = "geopy" }, { name = "matplotlib" }, From aee347bd0aed7ecebebcf86ab63693a4b50f2b09 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:26:04 +0100 Subject: [PATCH 15/21] try 13 --- pyfuppes/v25.py | 1 + 1 file changed, 1 insertion(+) diff --git a/pyfuppes/v25.py b/pyfuppes/v25.py index c762f65..4c43418 100644 --- a/pyfuppes/v25.py +++ b/pyfuppes/v25.py @@ -9,6 +9,7 @@ from typing import Iterator, Optional, Union import tomli as toml_r + from pyfuppes.misc import insensitive_pattern, to_list_of_Path from pyfuppes.txt2dict import txt_2_dict From 3747db8e2945847433f24c78b6ef5cbef68a73fa Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:29:54 +0100 Subject: [PATCH 16/21] try #14 --- .github/workflows/pyfuppes-ci.yml | 4 ++-- pyproject.toml | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index de74363..9af4804 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -31,8 +31,8 @@ jobs: - name: Run black formatting run: uv run black . --color --diff --check - - name: Run ruff ckecks - run: uv run ruff check + # - name: Run ruff ckecks + # run: uv run ruff check - name: Run tests run: uv run -m pytest diff --git a/pyproject.toml b/pyproject.toml index 00a4e59..c40b84c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -39,8 +39,8 @@ dev = [ line-length = 100 target-version = ["py39", "py310", "py311", "py312"] -[tool.ruff] # https://github.com/charliermarsh/ruff -lint.ignore = ["E501"] # use defaults otherwise +[tool.ruff] +lint.ignore = ["E501"] lint.extend-select = ["I", "C4", "SIM"] # "C4" : comprehensions # "TCH" : type checking optimizations From f1be9f775b2fbadcfe7da4881eedd6d163562ad8 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:31:13 +0100 Subject: [PATCH 17/21] try #15 --- .github/workflows/pyfuppes-ci.yml | 36 ++----------------------------- 1 file changed, 2 insertions(+), 34 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index 9af4804..c1f66fb 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -31,40 +31,8 @@ jobs: - name: Run black formatting run: uv run black . --color --diff --check - # - name: Run ruff ckecks - # run: uv run ruff check + - name: Run ruff ckecks + run: uv run ruff check - name: Run tests run: uv run -m pytest - - # steps: - # - uses: actions/checkout@main - # - name: Set up Python ${{ matrix.python-version }} - # uses: actions/setup-python@main - # with: - # python-version: ${{ matrix.python-version }} - # - name: Install Poetry # windows won't work since it does not offer poetry - # uses: snok/install-poetry@main - # - name: Install dependencies - # shell: bash - # working-directory: ./pyfuppes - # run: | - # poetry install --no-interaction --no-ansi -vv - # - name: Lint with flake8 - # #shell: bash - # #working-directory: ./pyfuppes - # run: | - # # stop the build if there are Python syntax errors or undefined names - # poetry run flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics - # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide - # poetry run flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics - # - name: Run Black8 formatting - # #shell: bash - # #working-directory: ./pyfuppes - # run: | - # poetry run black . --color --diff --check - # - name: Test with pytest - # #shell: bash - # #working-directory: ./pyfuppes - # run: | - # poetry run pytest . From c9ccb7f92bd130c365eb90739df8b0ab65fb1291 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:33:40 +0100 Subject: [PATCH 18/21] try #15 --- pyproject.toml | 2 +- tests/test_avgbin.py | 1 + tests/test_filters.py | 1 + tests/test_geo.py | 1 + tests/test_interpolate.py | 1 + tests/test_misc.py | 1 + tests/test_na1001.py | 1 + tests/test_timeconversion.py | 1 + tests/test_timecorr.py | 1 + 9 files changed, 9 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c40b84c..8a06cf1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,7 +45,7 @@ lint.extend-select = ["I", "C4", "SIM"] # "C4" : comprehensions # "TCH" : type checking optimizations # "SIM" : code simplifications -target-version = "py310" +target-version = "py312" [tool.pytest.ini_options] addopts = ["--import-mode=importlib"] diff --git a/tests/test_avgbin.py b/tests/test_avgbin.py index 213ce09..65c22aa 100644 --- a/tests/test_avgbin.py +++ b/tests/test_avgbin.py @@ -3,6 +3,7 @@ import unittest import numpy as np + from pyfuppes import avgbinmap diff --git a/tests/test_filters.py b/tests/test_filters.py index 0eeb624..118e9a8 100644 --- a/tests/test_filters.py +++ b/tests/test_filters.py @@ -3,6 +3,7 @@ import unittest import numpy as np + from pyfuppes import filters diff --git a/tests/test_geo.py b/tests/test_geo.py index e53fb74..5cac00e 100644 --- a/tests/test_geo.py +++ b/tests/test_geo.py @@ -4,6 +4,7 @@ from datetime import datetime, timezone import numpy as np + from pyfuppes import geo diff --git a/tests/test_interpolate.py b/tests/test_interpolate.py index 691a0ab..5c4ecfe 100644 --- a/tests/test_interpolate.py +++ b/tests/test_interpolate.py @@ -6,6 +6,7 @@ import polars as pl from pandas import testing as pdtest from polars.testing import assert_series_equal + from pyfuppes import interpolate diff --git a/tests/test_misc.py b/tests/test_misc.py index 1323fc3..0d22933 100644 --- a/tests/test_misc.py +++ b/tests/test_misc.py @@ -4,6 +4,7 @@ from pathlib import Path import numpy as np + from pyfuppes import misc diff --git a/tests/test_na1001.py b/tests/test_na1001.py index 820cd41..b42eaaa 100644 --- a/tests/test_na1001.py +++ b/tests/test_na1001.py @@ -5,6 +5,7 @@ from pathlib import Path import polars as pl + from pyfuppes.na1001 import FFI1001 as na1001 try: diff --git a/tests/test_timeconversion.py b/tests/test_timeconversion.py index 649a1aa..70eed36 100644 --- a/tests/test_timeconversion.py +++ b/tests/test_timeconversion.py @@ -6,6 +6,7 @@ import numpy as np import pandas as pd import xarray as xr + from pyfuppes import timeconversion diff --git a/tests/test_timecorr.py b/tests/test_timecorr.py index 642ed13..89e3a07 100644 --- a/tests/test_timecorr.py +++ b/tests/test_timecorr.py @@ -5,6 +5,7 @@ import numpy as np import polars as pl from polars.testing import assert_frame_not_equal + from pyfuppes import timecorr From 0ffa111706436d7d693e445dbdcffb62fabbc575 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:37:48 +0100 Subject: [PATCH 19/21] try #17 --- .github/workflows/pyfuppes-ci.yml | 4 ++-- pyproject.toml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index c1f66fb..b8c0e49 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -12,7 +12,7 @@ jobs: strategy: fail-fast: true matrix: - python-version: ["3.12"] # ["3.10", "3.11", "3.12"] + python-version: ["3.10", "3.11", "3.12"] os: [ubuntu-latest] # , macos-latest, windows-latest] runs-on: ${{matrix.os}} steps: @@ -32,7 +32,7 @@ jobs: run: uv run black . --color --diff --check - name: Run ruff ckecks - run: uv run ruff check + run: uv run ruff check --target-version=py312 - name: Run tests run: uv run -m pytest diff --git a/pyproject.toml b/pyproject.toml index 8a06cf1..4a08a16 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,7 +45,7 @@ lint.extend-select = ["I", "C4", "SIM"] # "C4" : comprehensions # "TCH" : type checking optimizations # "SIM" : code simplifications -target-version = "py312" +target-version = "py39" [tool.pytest.ini_options] addopts = ["--import-mode=importlib"] From 842b002c9d808c91670c2f42f91dbc9feeec8d7b Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:38:41 +0100 Subject: [PATCH 20/21] finalize --- .github/workflows/pyfuppes-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index b8c0e49..eeb30c5 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -13,7 +13,7 @@ jobs: fail-fast: true matrix: python-version: ["3.10", "3.11", "3.12"] - os: [ubuntu-latest] # , macos-latest, windows-latest] + os: [ubuntu-latest, macos-latest, windows-latest] runs-on: ${{matrix.os}} steps: - uses: actions/checkout@v4 From 1b3682aa492a3a2b99cd76b74672ea1c2be01193 Mon Sep 17 00:00:00 2001 From: FObersteiner Date: Wed, 25 Dec 2024 18:41:24 +0100 Subject: [PATCH 21/21] windows doesn't work --- .github/workflows/pyfuppes-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/pyfuppes-ci.yml b/.github/workflows/pyfuppes-ci.yml index eeb30c5..319f06a 100644 --- a/.github/workflows/pyfuppes-ci.yml +++ b/.github/workflows/pyfuppes-ci.yml @@ -13,7 +13,7 @@ jobs: fail-fast: true matrix: python-version: ["3.10", "3.11", "3.12"] - os: [ubuntu-latest, macos-latest, windows-latest] + os: [ubuntu-latest, macos-latest] # , windows-latest] runs-on: ${{matrix.os}} steps: - uses: actions/checkout@v4