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Hello!
I've been trying to run STARSEQR with reads already aligned (with options for arriba, star-fusion and STARSEQR).
When running with the following options:
Hello!
I've been trying to run STARSEQR with reads already aligned (with options for arriba, star-fusion and STARSEQR).
When running with the following options:
starseqr.py -sb -sj -p -t 8 -g -r --v
or
starseqr.py -sj -sb -p -t 8 -g -r --v
or
starseqr.py -sb -p -t 8 -g -r --v
I'm always getting:
starseqr.py: error: the following arguments are required: -1/--fastq1, -2/--fastq2
How can I run the fusion caller only with bam files and chimeric junctions?
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