Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file #27

Open
kate-simonova opened this issue Apr 18, 2021 · 0 comments

Comments

@kate-simonova
Copy link

Running the following command generates an error:
starseqr.py -1 26-R-EMEA1-VA_S8_trim_L001_R1_001.fastq.gz -2 26-R-EMEA1-VA_S8_trim_L001_R2_001.fastq.gz -m 0 -p ./ -t 25 -i ./ -g ../genomes/Homo_sapiens/UCSC/hg38/Annotation/Genes/genes.gtf -r ../genomes/Homo_sapiens/UCSC/hg38/Sequence/WholeGenomeFasta/genome.fa

2021-04-18 20:45 - ERROR - b'\nBAMoutput.cpp:27:BAMoutput: exiting because of *OUTPUT FILE* error: could not create output file /home/simonova/fusion_genes_kate_STAR-SEQR/fusion_genes_kate._STARtmp//BAMsort/20/16\nSOLUTION: check that the path exists and you have write permission for this file. Also check ulimit -n and increase it to allow more open files.\n\nApr 18 20:45:20 ...... FATAL ERROR, exiting\n'
2021-04-18 20:45 - ERROR - Error: STAR failed
NoneType: None
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant