Increase version for v2.12.0rc2 and update changelog (#2675)

Author: sloosvel

CITATION.cff

@@ -225,11 +225,11 @@ authors:
     orcid: "https://orcid.org/0009-0004-2333-3358"
 
 cff-version: 1.2.0
-date-released: 2024-11-26
+date-released: 2025-02-21
 doi: "10.5281/zenodo.3387139"
 license: "Apache-2.0"
 message: "If you use this software, please cite it using these metadata."
 repository-code: "https://github.com/ESMValGroup/ESMValCore/"
 title: ESMValCore
-version: "v2.11.1"
+version: "v2.12.0rc2"
 ...

doc/changelog.rst

@@ -3,6 +3,171 @@
 Changelog
 =========
 
+=======
+
+.. _changelog-v2-12-0:
+
+v2.12.0
+-------
+
+Highlights
+
+Preprocessor :func:`esmvalcore.preprocessor.extract_time` now allows to
+extract time blocks in each year by making parameters ``start_year`` and
+``end_year`` optional.
+
+This release includes
+
+Backwards incompatible changes
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+-  Make derivation of total column ozone (`toz`) more flexible and add derivation of stratospheric and tropospheric column ozone (:pull:`2509`) by :user:`schlunma`
+-  Merge configuration object from multiple files (instead of one single file) (:pull:`2448`) by :user:`schlunma`
+-  Remove deprecated CMOR fix/check code (:pull:`2552`) by :user:`schlunma`
+-  Remove deprecated statistical operators (:pull:`2553`) by :user:`schlunma`
+-  Save all files in a task at the same time to avoid recomputing intermediate results (:pull:`2522`) by :user:`bouweandela`
+
+Deprecations
+~~~~~~~~~~~~
+
+-  Make Dask configurable in our configuration (:pull:`2616`) by :user:`schlunma`
+
+Bug fixes
+~~~~~~~~~
+
+-  Concatenate by experiment before concatenating all input files (:pull:`2343`) by :user:`dhohn`
+-  Update `CFG` with configuration options given via command line (:pull:`2595`) by :user:`schlunma`
+-  Avoid a crash when there is a timeout when shutting down the Dask cluster (:pull:`2580`) by :user:`bouweandela`
+-  More reliable datasets to recipe conversion (:pull:`2472`) by :user:`bouweandela`
+-  Avoid mutating the input cubes when building the combined cube in preprocessor function ``multi_model_statistics`` (:pull:`2564`) by :user:`bouweandela`
+-  Do not change function argument names when decorator `preserve_float_dtype` is used (:pull:`2645`) by :user:`schlunma`
+-  Always write target coordinates to source cube after regridding (:pull:`2673`) by :user:`schlunma`
+
+CMOR standard
+~~~~~~~~~~~~~
+
+-  New custom variable for tos uncertainty (:pull:`2470`) by :user:`LisaBock`
+-  Add `prc` fix for native6 ERA5 CMORization (:pull:`2550`) by :user:`malininae`
+-  Added more variables to EMAC extra facets (:pull:`2617`) by :user:`schlunma`
+-  Adding custom tables for ETCCDI indices (:pull:`2442`) by :user:`malininae`
+
+Configuration
+~~~~~~~~~~~~~
+
+-  Add public `Config.update_from_dirs()` method (:pull:`2538`) by :user:`schlunma`
+-  Do not use `Path` objects as configuration dictionary keys to avoid errors in `dask.config.merge` (:pull:`2578`) by :user:`schlunma`
+-  Revise the `user-config.yml` to support updated MO user config requirements (:pull:`2658`) by :user:`ehogan`
+
+Computational performance improvements
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+-  Add an iris-esmf-regrid based regridding scheme (:pull:`2457`) by :user:`bouweandela`
+-  Miscellaneous lazy preprocessor improvements (:pull:`2520`) by :user:`bouweandela`
+-  Only save data from one preprocessing task at a time with the Distributed scheduler (:pull:`2610`) by :user:`bouweandela`
+-  Use better defaults when using ``max_parallel_tasks`` with an unconfigured threaded scheduler (:pull:`2626`) by :user:`bouweandela`
+-  Fix OSX compatibility (:pull:`2636`) by :user:`bouweandela`
+-  Make sure that supplementary variables and weights have same chunks as parent cube (:pull:`2637`) by :user:`schlunma`
+
+Documentation
+~~~~~~~~~~~~~
+
+-  Ignore autosummary warning in documentation build (:pull:`2480`) by :user:`bouweandela`
+-  Fix documentation build and broken link (:pull:`2519`) by :user:`bouweandela`
+-  Dark mode compatible logo (:pull:`2532`) by :user:`lukruh`
+-  Add a pre-commit badge to README (:pull:`2534`) by :user:`valeriupredoi`
+-  Retire Mambaforge (:pull:`2556`) by :user:`valeriupredoi`
+-  Readthedocs configuration: temporary revert to miniconda before miniforge3 becomes available (remove Mambaforge) (:pull:`2562`) by :user:`valeriupredoi`
+-  Remove Docker build badge in README (:pull:`2565`) by :user:`valeriupredoi`
+-  Optimize documentation about Earth mover distance in distance_metric preprocessor (:pull:`2423`) by :user:`schlunma`
+-  Update the `esmvaltool` command welcome message (:pull:`2635`) by :user:`bouweandela`
+-  Pin sphinx to < 8.2 (:pull:`2671`) by :user:`bouweandela`
+
+Fixes for datasets
+~~~~~~~~~~~~~~~~~~
+
+-  Extra facets added for EMAC to map o3, tro3 and aps (:pull:`2501`) by :user:`FranziskaWinterstein`
+-  Fix for CMIP6 AWI-ESM-1-1-LR parent time units (:pull:`2507`) by :user:`brittaGrusdt`
+-  Use our own unit conversion function in our fixes (:pull:`2560`) by :user:`schlunma`
+-  Missing 2m height coordinate and monotonicity for tasmin in CESM2 and CESM2-WACCM  (:pull:`2574`) by :user:`Karen-A-Garcia`
+-  Monotonicity fixes for Fgoals (:pull:`2603`) by :user:`Karen-A-Garcia`
+-  Expand Amon fix of FIO-ESM-2-0 (CMIP6) (:pull:`2619`) by :user:`schlunma`
+-  Added fixes for some 3D atmospheric variables of E3SM-1-1 (CMIP6) (:pull:`2620`) by :user:`schlunma`
+-  Correct incorrect time bounds in EMAC data (:pull:`2621`) by :user:`FranziskaWinterstein`
+-  Do not copy ICON horizontal grid every time it is used (:pull:`2633`) by :user:`schlunma`
+-  Fix `oh` for model: EC-Earth3-AerChem mip: AERMonZ (:pull:`2634`) by :user:`valeriupredoi`
+-  Update CMIP5 EC-EARTH pr fix (:pull:`2666`) by :user:`bouweandela`
+-  Add a fix for differing index coord long names in NorESM2-MM and EC-Earth3-Veg-LR (:pull:`2667`) by :user:`bouweandela`
+
+Installation
+~~~~~~~~~~~~
+
+-  Free esmpy of ` >=8.6.0` pin and pin `iris-grib >=0.20.0` (:pull:`2542`) by :user:`valeriupredoi`
+-  Use pyproject.toml instead of setup.py/setup.cfg (:pull:`2540`) by :user:`bouweandela`
+-  Use `miniforge3` for our docker builds instead of `mambaforge` (:pull:`2558`) by :user:`valeriupredoi`
+-  Support Python 3.13 (:pull:`2566`) by :user:`valeriupredoi`
+-  Pin dask (:pull:`2654`) by :user:`sloosvel`
+
+Iris
+~~~~
+
+-  Set iris.FUTURE flags in one place (:pull:`2622`) by :user:`bouweandela`
+-  Silence Iris warnings in ``area_statistics`` preprocessor function (:pull:`2625`) by :user:`bouweandela`
+
+Preprocessor
+~~~~~~~~~~~~
+
+-  Merge input cubes only once when computing lazy multimodel statistics (:pull:`2518`) by :user:`bouweandela`
+-  Make `start_year`, `end_year` in `extract_time` optional to obtain time blocks in each year (:pull:`2490`) by :user:`malininae`
+-  Adding hurs (relative humidity) derivation script (:pull:`2397`) by :user:`malininae`
+-  Added cumulative sum preprocessor (:pull:`2642`) by :user:`schlunma`
+-  Unified ignoring of `iris.warnings.IrisVagueMetadataWarning` in preprocessors (:pull:`2646`) by :user:`schlunma`
+-  Raise error if weights are used with unweighted aggregator (:pull:`2640`) by :user:`schlunma`
+-  Allow using multi model statistics preprocessor on datasets without `timerange` (:pull:`2644`) by :user:`schlunma`
+-  Allow using output from `multi_model_statistics` or `ensemble_statistics` as reference for `bias` or `distance_metric` (:pull:`2652`) by :user:`schlunma`
+-  Add option to ignore horizontal coordinates if there are multiple when regridding (:pull:`2672`) by :user:`bouweandela`
+
+Observational and re-analysis dataset support
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+-  Add support for native ERA5 data in GRIB format (:pull:`2178`) by :user:`schlunma`
+
+Automatic testing
+~~~~~~~~~~~~~~~~~
+
+-  Run a nightly test with the development version of dependencies (:pull:`2478`) by :user:`bouweandela`
+-  Use ruff formatter and pre-commit (:pull:`2524`) by :user:`bouweandela`
+-  Fix tests if deprecated `~/.esmvaltool/config-user.yml` file is available (:pull:`2543`) by :user:`schlunma`
+-  Disable upstream tests on commits (:pull:`2548`) by :user:`bouweandela`
+-  Disable collecting test coverage by default (:pull:`2456`) by :user:`bouweandela`
+-  Enable ruff flake8-bugbear rule (:pull:`2536`) by :user:`bouweandela`
+-  Pin mamba in conda lock creation github action (:pull:`2561`) by :user:`valeriupredoi`
+-  [Numpy2] Support for `numpy==2.0.0` (and pin `iris >=3.11`) (:pull:`2395`) by :user:`valeriupredoi`
+-  Switch back to Python 3.12 for conda lock file creation due to mamba<2 pin (:pull:`2606`) by :user:`valeriupredoi`
+-  Always ignore user's configuration when running Dask tests (:pull:`2624`) by :user:`schlunma`
+-  Restrict runs of cron Github Actions on forks (:pull:`2649`) by :user:`valeriupredoi`
+-  Fix test that loads realistic GRIB file (:pull:`2665`) by :user:`schlunma`
+-  Fix failing test with Dask 2025.2: ours issue not theirs (:pull:`2663`) by :user:`valeriupredoi`
+
+Variable Derivation
+~~~~~~~~~~~~~~~~~~~
+
+-  Introduction of the variable prodlnox for EMAC (:pull:`2499`) by :user:`FranziskaWinterstein`
+
+Improvements
+~~~~~~~~~~~~
+
+-  On-the-fly cmoriser for ACCESS native data (:pull:`2430`) by :user:`rhaegar325`
+-  Fix CFF file (:pull:`2476`) by :user:`rbeucher`
+-  Write settings.yml parameters in original order (:pull:`2352`) by :user:`enekomartinmartinez`
+-  Fix `access-mapping.yml` extra_facets title (:pull:`2485`) by :user:`rhaegar325`
+-  Remove ability to log on to ESGF (:pull:`2508`) by :user:`bouweandela`
+-  Disable automatic fixes by pre-commit.ci (:pull:`2527`) by :user:`bouweandela`
+-  Ignore reformatting when viewing git blame (:pull:`2539`) by :user:`bouweandela`
+-  Enable ruff pydocstyle linter rule (:pull:`2547`) by :user:`bouweandela`
+-  Allows relative paths for diagnostic scripts. (:pull:`2329`) by :user:`rbeucher`
+-  Fix 2593 Change log INFO to DEBUG (:pull:`2600`) by :user:`rbeucher`
+
+
 .. _changelog-v2-11-1:
 
 v2.11.1