references.bib

@article{subramanian2005,
	title = {Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles},
	author = {Subramanian, Aravind and Tamayo, Pablo and Mootha, Vamsi K. and Mukherjee, Sayan and Ebert, Benjamin L. and Gillette, Michael A. and Paulovich, Amanda and Pomeroy, Scott L. and Golub, Todd R. and Lander, Eric S. and Mesirov, Jill P.},
	date = {2005-10-25},
	journal = {Proceedings of the National Academy of Sciences},
	pages = {15545--15550},
	volume = {102},
	number = {43},
	doi = {10.1073/pnas.0506580102},
	url = {https://www.pnas.org/doi/10.1073/pnas.0506580102},
	note = {Publisher: Proceedings of the National Academy of Sciences}
}

@article{korotkevich,
	title = {Fast gene set enrichment analysis},
	author = {Korotkevich, Gennady and Sukhov, Vladimir and Budin, Nikolay and Shpak, Boris and Artyomov, Maxim N. and Sergushichev, Alexey},
	date = {2021-02-01},
	doi = {10.1101/060012},
	journal = {bioRxiv},
	langid = {en}
}

@article{kuleshov2016,
	title = {Enrichr: a comprehensive gene set enrichment analysis web server 2016 update},
	author = {Kuleshov, Maxim V. and Jones, Matthew R. and Rouillard, Andrew D. and Fernandez, Nicolas F. and Duan, Qiaonan and Wang, Zichen and Koplev, Simon and Jenkins, Sherry L. and Jagodnik, Kathleen M. and Lachmann, Alexander and McDermott, Michael G. and Monteiro, Caroline D. and Gundersen, Gregory W. and {Ma'ayan}, Avi},
	date = {2016-07-08},
	journal = {Nucleic Acids Research},
	pages = {W90--W97},
	volume = {44},
	number = {W1},
	doi = {10.1093/nar/gkw377},
	url = {https://doi.org/10.1093/nar/gkw377}
}

@article{turek,
	title = {{mulea}: {An} {R} package for enrichment analysis using multiple ontologies and empirical false discovery rate},
	author = {Turek, Cezary and {Ölbei}, {Márton} and Stirling, {Tamás} and Fekete, Gergely and {Tasnádi}, Ervin and Gul, Leila and {Bohár}, {Balázs} and Papp, {Balázs} and Jurkowski, Wiktor and Ari, Eszter},
	year = {2024},
	month = {10},
	date = {2024-10-18},
	journal = {BMC Bioinformatics},
	pages = {334},
	volume = {25},
	number = {1},
	doi = {10.1186/s12859-024-05948-7},
	url = {https://doi.org/10.1186/s12859-024-05948-7}
}

@article{méhi2014,
	title = {Perturbation of iron homeostasis promotes the evolution of antibiotic resistance},
	author = {{Méhi}, Orsolya and Bogos, {Balázs} and {Csörg{{\H o}}}, {Bálint} and {Pál}, Ferenc and Nyerges, {Ákos} and Papp, {Balázs} and {Pál}, Csaba},
	year = {2014},
	month = {10},
	date = {2014-10-01},
	journal = {Molecular Biology and Evolution},
	pages = {2793--2804},
	volume = {31},
	number = {10},
	doi = {10.1093/molbev/msu223},
	url = {https://doi.org/10.1093/molbev/msu223}
}