diff --git a/Mikado/daijin/tr.snakefile b/Mikado/daijin/tr.snakefile index 9b1b32464..f1364535f 100644 --- a/Mikado/daijin/tr.snakefile +++ b/Mikado/daijin/tr.snakefile @@ -642,7 +642,7 @@ rule asm_map_trinitygg: load=loadPre(config["load"]["gmap"]), gff=ASM_DIR+"/trinity-{run2}-{alrun}/trinity-{run2}-{alrun}.gff", link_src="../trinity-{run2}-{alrun}/trinity-{run2}-{alrun}.gff", - intron_length=gmap_intron_lengths(MAX_INTRON) + intron_length=gmap_intron_lengths(loadPre(confid["load"]["gmap"], MAX_INTRON)) log: ASM_DIR+"/trinitygmap-{run2}-{alrun}.log" threads: THREADS message: "Mapping trinity transcripts to the genome (run {wildcards.run2}): {input.transcripts}"