DESCRIPTION

Package: hoodscanR
Title: Spatial cellular neighbourhood scanning in R
Version: 1.5.1
Authors@R: 
    c(person(given = "Ning",
             family = "Liu",
             role = c("aut", "cre"),
             email = "liu.n@wehi.edu.au",
             comment = c(ORCID = "0000-0002-9487-9305")),
      person(given = "Jarryd",
             family = "Martin",
             role = c("aut"),
             email = "",
             comment = c(ORCID = "")))
Description: hoodscanR is an user-friendly R package providing functions to assist 
    cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. 
    All functions in the package are built based on the SpatialExperiment object, 
    allowing integration into various spatial transcriptomics-related packages from Bioconductor.
    The package can result in cell-level neighborhood annotation output, along with funtions to
    perform neighborhood colocalization analysis and neighborhood-based cell clustering.
biocViews: Spatial, Transcriptomics, SingleCell, Clustering
License: GPL-3 + file LICENSE
URL: https://github.com/DavisLaboratory/hoodscanR, https://davislaboratory.github.io/hoodscanR/
BugReports: https://github.com/DavisLaboratory/hoodscanR/issues
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports:
    knitr,
    rmarkdown,
    SpatialExperiment,
    SummarizedExperiment,
    circlize,
    ComplexHeatmap,
    scico,
    rlang,
    utils,
    ggplot2,
    grid,
    methods,
    stats,
    RANN,
    Rcpp (>= 1.0.9)
LinkingTo:
    Rcpp
Suggests:
    testthat (>= 3.0.0),
    BiocStyle
Config/testthat/edition: 3
Depends: 
    R (>= 4.3)
VignetteBuilder: knitr