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profiling_anomalies.py
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import typing
import plotly.express as px
import streamlit as st
import testgen.ui.services.database_service as db
import testgen.ui.services.form_service as fm
import testgen.ui.services.query_service as dq
import testgen.ui.services.toolbar_service as tb
from testgen.ui.components import widgets as testgen
from testgen.ui.navigation.page import Page
from testgen.ui.session import session
class ProfilingAnomaliesPage(Page):
path = "profiling/anomalies"
can_activate: typing.ClassVar = [
lambda: session.authentication_status or "login",
]
def render(self) -> None:
export_container = fm.render_page_header(
"Profiling Anomalies",
"https://docs.datakitchen.io/article/dataops-testgen-help/profile-anomalies",
lst_breadcrumbs=[
{"label": "Overview", "path": "overview"},
{"label": "Data Profiling", "path": "profiling"},
{"label": "Profiling Anomalies", "path": None},
],
)
if "project" not in st.session_state:
st.write("Select a Project from the Overview page.")
else:
str_project = st.session_state["project"]
# Setup Toolbar
tool_bar = tb.ToolBar(3, 1, 4, None)
# Look for drill-down from another page
# No need to clear -- will be sent every time page is accessed
str_drill_tg = st.session_state.get("drill_profile_tg")
str_drill_prun = st.session_state.get("drill_profile_run")
with tool_bar.long_slots[0]:
# Table Groups selection
df_tg = get_db_table_group_choices(str_project)
str_drill_tg_name = (
df_tg[df_tg["id"] == str_drill_tg]["table_groups_name"].values[0] if str_drill_tg else None
)
str_table_groups_id = fm.render_select(
"Table Group", df_tg, "table_groups_name", "id", str_default=str_drill_tg_name, boo_disabled=True
)
str_profile_run_id = str_drill_prun
with tool_bar.long_slots[1]:
# Likelihood selection - optional filter
lst_status_options = ["All Likelihoods", "Definite", "Likely", "Possible"]
str_likelihood = st.selectbox("Issue Likelihood", lst_status_options)
with tool_bar.short_slots[0]:
str_help = "Toggle on to perform actions on multiple anomalies"
do_multi_select = st.toggle("Multi-Select", help=str_help)
if str_table_groups_id:
# Get summary counts
df_sum = get_profiling_anomaly_summary(str_profile_run_id)
# Get anomaly list
df_pa = get_profiling_anomalies(str_profile_run_id, str_likelihood)
# Retrieve disposition action (cache refreshed)
df_action = get_anomaly_disposition(str_profile_run_id)
# Update action from disposition df
action_map = df_action.set_index("id")["action"].to_dict()
df_pa["action"] = df_pa["id"].map(action_map).fillna(df_pa["action"])
if not df_pa.empty:
# write_frequency_graph(df_pa)
write_summary_graph(df_sum)
lst_show_columns = [
"table_name",
"column_name",
"issue_likelihood",
"action",
"anomaly_name",
"detail",
]
# TODO: Can we reintegrate percents below:
# tool_bar.set_prompt(
# f"Anomalies Found: {df_sum.at[0, 'issue_ct']} issues in {df_sum.at[0, 'column_ct']} columns, {df_sum.at[0, 'table_ct']} tables in schema {df_pa.loc[0, 'schema_name']}"
# )
# Show main grid and retrieve selections
selected = fm.render_grid_select(
df_pa, lst_show_columns, int_height=400, do_multi_select=do_multi_select
)
with export_container:
lst_export_columns = [
"schema_name",
"table_name",
"column_name",
"anomaly_name",
"issue_likelihood",
"anomaly_description",
"action",
"detail",
"suggested_action",
]
lst_wrap_columns = ["anomaly_description", "suggested_action"]
fm.render_excel_export(df_pa, lst_export_columns, "Profiling Anomalies", lst_wrap_columns)
if selected:
# Always show details for last selected row
selected_row = selected[len(selected) - 1]
else:
selected_row = None
# Display anomaly detail for selected row
if not selected_row:
st.markdown(":orange[Select a record to see more information.]")
else:
col1, col2 = st.columns([0.7, 0.3])
with col1:
fm.render_html_list(
selected_row,
[
"anomaly_name",
"table_name",
"column_name",
"column_type",
"anomaly_description",
"detail",
"likelihood_explanation",
"suggested_action",
],
"Anomaly Information",
int_data_width=700,
)
with col2:
_, v_col2 = st.columns([0.3, 0.7])
view_bad_data(v_col2, selected_row)
# Need to render toolbar buttons after grid, so selection status is maintained
if tool_bar.button_slots[0].button(
"✓", help="Confirm this issue as relevant for this run", disabled=not selected
):
fm.reset_post_updates(
do_disposition_update(selected, "Confirmed"),
as_toast=True,
clear_cache=True,
lst_cached_functions=[get_anomaly_disposition, get_profiling_anomaly_summary],
)
if tool_bar.button_slots[1].button(
"✘", help="Dismiss this issue as not relevant for this run", disabled=not selected
):
fm.reset_post_updates(
do_disposition_update(selected, "Dismissed"),
as_toast=True,
clear_cache=True,
lst_cached_functions=[get_anomaly_disposition, get_profiling_anomaly_summary],
)
if tool_bar.button_slots[2].button(
"🔇", help="Mute this test to deactivate it for future runs", disabled=not selected
):
fm.reset_post_updates(
do_disposition_update(selected, "Inactive"),
as_toast=True,
clear_cache=True,
lst_cached_functions=[get_anomaly_disposition, get_profiling_anomaly_summary],
)
if tool_bar.button_slots[3].button("↩︎", help="Clear action", disabled=not selected):
fm.reset_post_updates(
do_disposition_update(selected, "No Decision"),
as_toast=True,
clear_cache=True,
lst_cached_functions=[get_anomaly_disposition, get_profiling_anomaly_summary],
)
else:
tool_bar.set_prompt("No Anomalies Found")
# Help Links
st.markdown(
"[Help on Anomalies](https://docs.datakitchen.io/article/dataops-testgen-help/profile-anomalies)"
)
# with st.sidebar:
# st.divider()
@st.cache_data(show_spinner=False)
def get_db_table_group_choices(str_project_code):
str_schema = st.session_state["dbschema"]
return dq.run_table_groups_lookup_query(str_schema, str_project_code)
@st.cache_data(show_spinner=False)
def get_latest_profile_run(str_table_group):
str_schema = st.session_state["dbschema"]
str_sql = f"""
WITH last_profile_run
AS (SELECT table_groups_id, MAX(profiling_starttime) as last_profile_run_date
FROM profiling_runs
GROUP BY table_groups_id)
SELECT profile_run_id
FROM {str_schema}.profiling_runs r
INNER JOIN {str_schema}.last_profile_run l
ON (r.table_groups_id = l.table_groups_id
AND r.profiling_starttime = l.last_profile_run_date)
WHERE r.table_groups_id = '{str_table_group}';
"""
str_profile_run_id = db.retrieve_single_result(str_sql)
return str_profile_run_id
@st.cache_data(show_spinner="Retrieving Data")
def get_profiling_anomalies(str_profile_run_id, str_likelihood):
str_schema = st.session_state["dbschema"]
str_criteria = f" AND t.issue_likelihood = '{str_likelihood}'" if str_likelihood != "All Likelihoods" else ""
# Define the query -- first visible column must be first, because will hold the multi-select box
str_sql = f"""
SELECT r.table_name, r.column_name, r.schema_name,
r.column_type,t.anomaly_name, t.issue_likelihood,
r.disposition, null as action,
CASE
WHEN t.issue_likelihood = 'Possible' THEN 'Possible: speculative test that often identifies problems'
WHEN t.issue_likelihood = 'Likely' THEN 'Likely: typically indicates a data problem'
WHEN t.issue_likelihood = 'Definite' THEN 'Definite: indicates a highly-likely data problem'
END as likelihood_explanation,
t.anomaly_description, r.detail, t.suggested_action,
r.anomaly_id, r.table_groups_id::VARCHAR, r.id::VARCHAR, p.profiling_starttime
FROM {str_schema}.profile_anomaly_results r
INNER JOIN {str_schema}.profile_anomaly_types t
ON r.anomaly_id = t.id
INNER JOIN {str_schema}.profiling_runs p
ON r.profile_run_id = p.id
WHERE r.profile_run_id = '{str_profile_run_id}'
{str_criteria}
ORDER BY r.schema_name, r.table_name, r.column_name;
"""
# Retrieve data as df
df = db.retrieve_data(str_sql)
dct_replace = {"Confirmed": "✓", "Dismissed": "✘", "Inactive": "🔇"}
df["action"] = df["disposition"].replace(dct_replace)
return df
@st.cache_data(show_spinner="Retrieving Status")
def get_anomaly_disposition(str_profile_run_id):
str_schema = st.session_state["dbschema"]
str_sql = f"""
SELECT id::VARCHAR, disposition
FROM {str_schema}.profile_anomaly_results s
WHERE s.profile_run_id = '{str_profile_run_id}';
"""
# Retrieve data as df
df = db.retrieve_data(str_sql)
dct_replace = {"Confirmed": "✓", "Dismissed": "✘", "Inactive": "🔇", "Passed": ""}
df["action"] = df["disposition"].replace(dct_replace)
return df[["id", "action"]]
@st.cache_data(show_spinner=False)
def get_profiling_anomaly_summary(str_profile_run_id):
str_schema = st.session_state["dbschema"]
# Define the query
str_sql = f"""
SELECT schema_name,
COUNT(DISTINCT s.table_name) as table_ct,
COUNT(DISTINCT s.column_name) as column_ct,
COUNT(*) as issue_ct,
SUM(CASE WHEN COALESCE(s.disposition, 'Confirmed') = 'Confirmed'
AND t.issue_likelihood = 'Definite' THEN 1 ELSE 0 END) as definite_ct,
SUM(CASE WHEN COALESCE(s.disposition, 'Confirmed') = 'Confirmed'
AND t.issue_likelihood = 'Likely' THEN 1 ELSE 0 END) as likely_ct,
SUM(CASE WHEN COALESCE(s.disposition, 'Confirmed') = 'Confirmed'
AND t.issue_likelihood = 'Possible' THEN 1 ELSE 0 END) as possible_ct,
SUM(CASE WHEN COALESCE(s.disposition, 'Confirmed')
IN ('Dismissed', 'Inactive') THEN 1 ELSE 0 END) as dismissed_ct
FROM {str_schema}.profile_anomaly_results s
LEFT JOIN {str_schema}.profile_anomaly_types t
ON (s.anomaly_id = t.id)
WHERE s.profile_run_id = '{str_profile_run_id}'
GROUP BY schema_name;
"""
# Retrieve and return data as df
return db.retrieve_data(str_sql)
@st.cache_data(show_spinner=False)
def get_bad_data(selected_row):
str_schema = st.session_state["dbschema"]
# Define the query
str_sql = f"""
SELECT t.lookup_query, tg.table_group_schema, c.project_qc_schema,
c.sql_flavor, c.project_host, c.project_port, c.project_db, c.project_user, c.project_pw_encrypted,
c.url, c.connect_by_url
FROM {str_schema}.target_data_lookups t
INNER JOIN {str_schema}.table_groups tg
ON ('{selected_row["table_groups_id"]}'::UUID = tg.id)
INNER JOIN {str_schema}.connections c
ON (tg.connection_id = c.connection_id)
AND (t.sql_flavor = c.sql_flavor)
WHERE t.error_type = 'Profile Anomaly'
AND t.test_id = '{selected_row["anomaly_id"]}'
AND t.lookup_query > '';
"""
def get_lookup_query(test_id, detail_exp, column_names):
if test_id in {"1019", "1020"}:
start_index = detail_exp.find("Columns: ")
if start_index == -1:
columns = [col.strip() for col in column_names.split(",")]
else:
start_index += len("Columns: ")
column_names_str = detail_exp[start_index:]
columns = [col.strip() for col in column_names_str.split(",")]
queries = [
f"SELECT '{column}' AS column_name, MAX({column}) AS max_date_available FROM {{TARGET_SCHEMA}}.{{TABLE_NAME}}"
for column in columns
]
sql_query = " UNION ALL ".join(queries) + " ORDER BY max_date_available DESC;"
else:
sql_query = ""
return sql_query
def replace_parms(str_query):
str_query = (
get_lookup_query(selected_row["anomaly_id"], selected_row["detail"], selected_row["column_name"])
if lst_query[0]["lookup_query"] == "created_in_ui"
else lst_query[0]["lookup_query"]
)
str_query = str_query.replace("{TARGET_SCHEMA}", lst_query[0]["table_group_schema"])
str_query = str_query.replace("{TABLE_NAME}", selected_row["table_name"])
str_query = str_query.replace("{COLUMN_NAME}", selected_row["column_name"])
str_query = str_query.replace("{DATA_QC_SCHEMA}", lst_query[0]["project_qc_schema"])
str_query = str_query.replace("{DETAIL_EXPRESSION}", selected_row["detail"])
str_query = str_query.replace("{PROFILE_RUN_DATE}", selected_row["profiling_starttime"])
if str_query is None or str_query == "":
raise ValueError("Lookup query is not defined for this Anomoly Type.")
return str_query
try:
# Retrieve SQL for customer lookup
lst_query = db.retrieve_data_list(str_sql)
# Retrieve and return data as df
if lst_query:
str_sql = replace_parms(str_sql)
df = db.retrieve_target_db_df(
lst_query[0]["sql_flavor"],
lst_query[0]["project_host"],
lst_query[0]["project_port"],
lst_query[0]["project_db"],
lst_query[0]["project_user"],
lst_query[0]["project_pw_encrypted"],
str_sql,
lst_query[0]["url"],
lst_query[0]["connect_by_url"],
)
if df.empty:
return "ND", "Data that violates Anomaly criteria is not present in the current dataset.", None
else:
return "OK", None, df
else:
return "NA", "A source data lookup for this Anomaly is not available.", None
except Exception as e:
return "ERR", f"Source data lookup query caused an error:\n\n{e.args[0]}", None
def write_summary_graph(df_sum):
df_graph = df_sum[["definite_ct", "likely_ct", "possible_ct", "dismissed_ct"]]
str_graph_caption = f"<i>Definite: {df_sum.at[0, 'definite_ct']}, Likely: {df_sum.at[0, 'likely_ct']}, Possible: {df_sum.at[0, 'possible_ct']}, Dismissed: {df_sum.at[0, 'dismissed_ct']}</i>"
fig = px.bar(
df_graph,
orientation="h",
title=None,
color_discrete_sequence=["red", "orange", "yellow", "green"],
barmode="stack",
)
fig.update_traces(hovertemplate="%{x}")
fig.update_layout(
showlegend=False,
legend_orientation="h",
legend_y=-0.2, # This value might need to be adjusted based on other chart elements
legend_x=0.5,
legend_xanchor="right",
legend_title_text="",
yaxis={
"showticklabels": False, # hides y-axis labels
"showgrid": False, # removes grid lines
"zeroline": False, # removes the zero line
"showline": False, # hides the axis line
"title_text": "",
},
xaxis={
"showticklabels": False, # hides y-axis labels
"showgrid": False, # removes grid lines
"zeroline": False, # removes the zero line
"showline": False, # hides the axis line
"title_text": "",
},
hovermode="closest",
height=100,
width=800,
margin={"l": 0, "r": 10, "b": 10, "t": 10}, # adjust margins around the plot
paper_bgcolor="rgba(0,0,0,0)",
plot_bgcolor="rgba(0,0,0,0)",
)
fig.add_annotation(
text=str_graph_caption,
xref="paper",
yref="paper",
# 'paper' coordinates are relative to the layout, with (0,0) at the bottom left and (1,1) at the top right
x=0,
y=0,
xanchor="left",
yanchor="top",
showarrow=False,
font={"size": 15, "color": "black"},
)
config = {"displayModeBar": False}
st.plotly_chart(fig, config=config)
def write_frequency_graph(df_tests):
# Count the frequency of each test_name
df_count = df_tests["anomaly_name"].value_counts().reset_index()
df_count.columns = ["anomaly_name", "frequency"]
# Sort the DataFrame by frequency in ascending order for display
df_count = df_count.sort_values(by="frequency", ascending=True)
# Create a horizontal bar chart using Plotly Express
fig = px.bar(df_count, x="frequency", y="anomaly_name", orientation="h", title="Anomaly Frequency")
fig.update_layout(title_font={"color": "green"}, paper_bgcolor="rgba(0,0,0,0)", plot_bgcolor="rgba(0,0,0,0)")
if len(df_count) <= 5:
# fig.update_layout(bargap=0.9)
fig.update_layout(height=300)
st.plotly_chart(fig)
def view_bad_data(button_container, selected_row):
str_header = f"Column: {selected_row['column_name']}, Table: {selected_row['table_name']}"
bad_data_modal = testgen.Modal(title=None, key="dk-anomaly-data-modal", max_width=1100)
with button_container:
if st.button(
"Review Source Data →", help="Review source data for highlighted anomaly", use_container_width=True
):
bad_data_modal.open()
if bad_data_modal.is_open():
with bad_data_modal.container():
# fm.show_subheader(str_header)
# fm.show_prompt(selected_row['anomaly_name'])
fm.render_modal_header(selected_row["anomaly_name"], None)
st.caption(selected_row["anomaly_description"])
fm.show_prompt(str_header)
# Show the detail line
fm.render_html_list(selected_row, ["detail"], None, 700, ["Anomaly Detail"])
with st.spinner("Retrieving source data..."):
bad_data_status, bad_data_msg, df_bad = get_bad_data(selected_row)
if bad_data_status in {"ND", "NA"}:
st.info(bad_data_msg)
elif bad_data_status == "ERR":
st.error(bad_data_msg)
elif df_bad is None:
st.error("An unknown error was encountered.")
else:
if bad_data_msg:
st.info(bad_data_msg)
# Pretify the dataframe
df_bad.columns = [col.replace("_", " ").title() for col in df_bad.columns]
df_bad.fillna("[NULL]", inplace=True)
# Display the dataframe
st.dataframe(df_bad, height=500, width=1050, hide_index=True)
def do_disposition_update(selected, str_new_status):
str_result = None
if selected:
if len(selected) > 1:
str_which = f"of {len(selected)} anomalies to {str_new_status}"
elif len(selected) == 1:
str_which = f"of one anomaly to {str_new_status}"
str_schema = st.session_state["dbschema"]
if not dq.update_anomaly_disposition(selected, str_schema, str_new_status):
str_result = f":red[**The update {str_which} did not succeed.**]"
return str_result