From bd14b57a59e1b996cb2415cb1ef2cfac434cf22d Mon Sep 17 00:00:00 2001
From: Dan Chaltiel <15105152+DanChaltiel@users.noreply.github.com>
Date: Fri, 1 Nov 2024 09:22:22 +0100
Subject: [PATCH] Internal fix for CRAN check

+ local_reproducible_output()
---
 CRAN-SUBMISSION                             |  6 +++---
 DESCRIPTION                                 |  2 +-
 NEWS.md                                     |  4 ++++
 codemeta.json                               |  4 ++--
 tests/testthat/_snaps/trialmaster-simple.md |  8 +++-----
 tests/testthat/helper-init.R                | 16 ++++++++++------
 tests/testthat/test-trialmaster-simple.R    |  1 +
 7 files changed, 24 insertions(+), 17 deletions(-)

diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION
index 0a6de68..0901ad8 100644
--- a/CRAN-SUBMISSION
+++ b/CRAN-SUBMISSION
@@ -1,3 +1,3 @@
-Version: 0.5.0
-Date: 2024-10-24 07:38:40 UTC
-SHA: e0d127c0b930cb25190a5e3c3ce5e511c79ece9b
+Version: 0.5.1
+Date: 2024-10-31 15:47:21 UTC
+SHA: 1984dd4853cd3b62fc5c64da7bc0cd7ffdb9e8fd
diff --git a/DESCRIPTION b/DESCRIPTION
index 8610b1c..ecc17f3 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: EDCimport
-Version: 0.5.0.9000
+Version: 0.5.1
 Title: Import Data from EDC Software
 Authors@R: 
     c(person(given = "Dan",
diff --git a/NEWS.md b/NEWS.md
index ba12de1..cfd5ee4 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -2,6 +2,10 @@
 
 EDCimport is a package designed to easily import data from EDC software TrialMaster. Browse code at <https://github.com/DanChaltiel/EDCimport> and read the doc at <https://danchaltiel.github.io/EDCimport/>.
 
+# EDCimport 0.5.1
+
+-   Internal fix for CRAN check
+
 # EDCimport 0.5.0
 
 ### New features
diff --git a/codemeta.json b/codemeta.json
index 729ffc0..bd40faf 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/DanChaltiel/EDCimport",
   "issueTracker": "https://github.com/DanChaltiel/EDCimport/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.5.0",
+  "version": "0.5.1",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -440,7 +440,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "676.638KB",
+  "fileSize": "676.727KB",
   "releaseNotes": "https://github.com/DanChaltiel/EDCimport/blob/master/NEWS.md",
   "readme": "https://github.com/DanChaltiel/EDCimport/blob/main/README.md",
   "contIntegration": "https://github.com/DanChaltiel/EDCimport/actions/workflows/check-standard.yaml",
diff --git a/tests/testthat/_snaps/trialmaster-simple.md b/tests/testthat/_snaps/trialmaster-simple.md
index 35f6655..cc47f6a 100644
--- a/tests/testthat/_snaps/trialmaster-simple.md
+++ b/tests/testthat/_snaps/trialmaster-simple.md
@@ -30,7 +30,7 @@
     Code
       w$.lookup
     Output
-      -- Lookup table - CRF (extraction of 2022-08-25) - EDCimport v0.0.0 ------------
+      -- Lookup table - CRF (extraction of 2022-08-25) - EDCimport v0.0.0 ---------------------------------------------------------
         dataset  nrow  ncol  n_id rows_per_id crfname                       
         <chr>   <dbl> <dbl> <int>       <dbl> <chr>                         
       1 site        1    33    NA          NA Trial Site Setup & Information
@@ -247,8 +247,7 @@
       [1] "AFGHANISTAN"   "ALAND ISLANDS" "ALBANIA"      
       
       $site$STTMZN
-      [1] "(GMT+00:00) Dublin, Edinburgh, Lisbon, London"
-      [2] "(GMT+00:00) Monrovia, Reykjavik"              
+      [1] "(GMT+00:00) Dublin, Edinburgh, Lisbon, London" "(GMT+00:00) Monrovia, Reykjavik"              
       [3] "(GMT+00:00) Sao Tome"                         
       
       $site$INCLSITE
@@ -257,8 +256,7 @@
       
       $trial
       $trial$TRTMZN
-      [1] "(GMT+00:00) Dublin, Edinburgh, Lisbon, London"
-      [2] "(GMT+00:00) Monrovia, Reykjavik"              
+      [1] "(GMT+00:00) Dublin, Edinburgh, Lisbon, London" "(GMT+00:00) Monrovia, Reykjavik"              
       [3] "(GMT+00:00) Sao Tome"                         
       
       $trial$INCLTRIA
diff --git a/tests/testthat/helper-init.R b/tests/testthat/helper-init.R
index 338aa78..4b4ab8a 100644
--- a/tests/testthat/helper-init.R
+++ b/tests/testthat/helper-init.R
@@ -36,12 +36,16 @@ if(is_testing()){
 # globalCallingHandlers(NULL)
 # rlang::global_entrace()
 
-library(fs, warn.conflicts=FALSE)
-library(usethis, warn.conflicts=FALSE)
-library(rlang, warn.conflicts=FALSE)
-library(cli, warn.conflicts=FALSE)
-library(dplyr, warn.conflicts=FALSE)
-library(purrr, warn.conflicts=FALSE)
+shhh = function(x){
+  if(rlang::is_installed(x)) library(x, character.only=TRUE, warn.conflicts=FALSE)
+}
+
+shhh("fs")
+shhh("usethis")
+shhh("rlang")
+shhh("cli")
+shhh("dplyr")
+shhh("purrr")
 # library(tidyverse, warn.conflicts=FALSE)
 
 
diff --git a/tests/testthat/test-trialmaster-simple.R b/tests/testthat/test-trialmaster-simple.R
index 21195f9..ec70754 100644
--- a/tests/testthat/test-trialmaster-simple.R
+++ b/tests/testthat/test-trialmaster-simple.R
@@ -5,6 +5,7 @@ edc_options(edc_lookup_overwrite_warn=FALSE)
 test_that("Read a TM archive", {
   clean_cache()
   clean_lookup()
+  local_reproducible_output(width=125)
   
   f = function(x) {
     x %>%