From 2658ad2c40cf04a322fcdc86aa33a8d62edd9f49 Mon Sep 17 00:00:00 2001
From: Dan Chaltiel <dan.chaltiel@gmail.com>
Date: Wed, 22 May 2024 15:50:25 +0200
Subject: [PATCH] doc

---
 NAMESPACE                | 6 ++----
 R/ae_table_grade.R       | 4 ++--
 man/ae_plot_grade_max.Rd | 4 +++-
 3 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/NAMESPACE b/NAMESPACE
index f02430a..b419e94 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -79,9 +79,9 @@ importFrom(dplyr,mutate)
 importFrom(dplyr,n)
 importFrom(dplyr,na_if)
 importFrom(dplyr,pull)
+importFrom(dplyr,recode)
 importFrom(dplyr,relocate)
 importFrom(dplyr,rename)
-importFrom(dplyr,rename_all)
 importFrom(dplyr,rename_with)
 importFrom(dplyr,rowwise)
 importFrom(dplyr,select)
@@ -107,6 +107,7 @@ importFrom(ggplot2,geom_point)
 importFrom(ggplot2,geom_text)
 importFrom(ggplot2,ggplot)
 importFrom(ggplot2,labs)
+importFrom(ggplot2,position_dodge)
 importFrom(ggplot2,scale_fill_manual)
 importFrom(ggplot2,scale_fill_steps)
 importFrom(ggplot2,scale_x_continuous)
@@ -118,7 +119,6 @@ importFrom(ggplot2,unit)
 importFrom(ggplot2,vars)
 importFrom(ggplot2,waiver)
 importFrom(glue,glue)
-importFrom(haven,read_sas)
 importFrom(haven,read_xpt)
 importFrom(labelled,var_label)
 importFrom(lifecycle,deprecate_warn)
@@ -155,7 +155,6 @@ importFrom(rlang,check_installed)
 importFrom(rlang,current_env)
 importFrom(rlang,enquo)
 importFrom(rlang,ensym)
-importFrom(rlang,global_env)
 importFrom(rlang,have_name)
 importFrom(rlang,int)
 importFrom(rlang,is_empty)
@@ -203,4 +202,3 @@ importFrom(tidyselect,matches)
 importFrom(tidyselect,where)
 importFrom(utils,head)
 importFrom(utils,object.size)
-importFrom(utils,read.csv)
diff --git a/R/ae_table_grade.R b/R/ae_table_grade.R
index f5a314c..7e44c0e 100644
--- a/R/ae_table_grade.R
+++ b/R/ae_table_grade.R
@@ -13,7 +13,7 @@
 #'
 #' @return a crosstable (dataframe)
 #' @export
-#' @importFrom dplyr arrange full_join mutate rename_with select summarise
+#' @importFrom dplyr arrange full_join mutate recode rename_with select summarise
 #'
 #' @examples
 #' 
@@ -71,7 +71,7 @@ ae_table_grade_max = function(
 #'
 #' @return a patchwork of ggplots
 #' @importFrom dplyr arrange full_join mutate rename_with select summarise
-#' @importFrom ggplot2 aes geom_bar ggplot labs scale_x_continuous scale_y_discrete theme waiver
+#' @importFrom ggplot2 aes geom_bar ggplot labs position_dodge scale_x_continuous scale_y_discrete theme waiver
 #' @importFrom purrr map
 #' @importFrom rlang set_names
 #' @export
diff --git a/man/ae_plot_grade_max.Rd b/man/ae_plot_grade_max.Rd
index 571a1da..f076acc 100644
--- a/man/ae_plot_grade_max.Rd
+++ b/man/ae_plot_grade_max.Rd
@@ -9,6 +9,7 @@ ae_plot_grade_max(
   ...,
   df_enrol,
   type = c("stack", "dodge", "fill"),
+  proportion = TRUE,
   drop_levels = FALSE,
   arm = "ARM",
   subjid = "SUBJID",
@@ -43,7 +44,8 @@ Produces a graphic representation of AE, counting the maximum grade each patient
 }
 \examples{
 tm = edc_example_ae()
-ae_plot_grade_max(df_ae=tm$ae, df_enrol=tm$enrolres, type=c("dodge", "fill"))
+ae_plot_grade_max(df_ae=tm$ae, df_enrol=tm$enrolres)
+ae_plot_grade_max(df_ae=tm$ae, df_enrol=tm$enrolres, type=c("dodge", "fill"), proportion=FALSE)
 ae_plot_grade_max(df_ae=tm$ae, df_enrol=tm$enrolres, arm=NULL) + ggplot2::coord_flip()
 
 #you can use modificators from the patchwork package, like "&"