Upgrade code base (#179)

Use pyproject.toml and upgrade to Python 3.10.
Only support Python 3.10.

Use SINTEF/ci-cd throughout where possible.
More info: https://SINTEF.github.io/ci-cd
Still use dependabot to update dependencies though.

Update code base according to ruff and pyupgrade.
Use ruff instead of pylint.

.codecov.yml

@@ -10,7 +10,7 @@ coverage:
 
   status:
     project:
-      default: off
+      default: false
       turtle-canon:
         threshold: 1%
         flags:

.github/dependabot.yml

@@ -6,11 +6,13 @@ updates:
     interval: weekly
     day: monday
     time: "05:00"
-  # Should be bigger than or equal to the total number of dependencies (currently 18)
-  open-pull-requests-limit: 30
+  # Should be bigger than or equal to the total number of dependencies (currently 11)
+  open-pull-requests-limit: 15
   target-branch: ci/dependabot-updates
   labels:
   - dependencies
+  - "CI/CD"
+  - skip_changelog
 - package-ecosystem: github-actions
   directory: "/"
   schedule:
@@ -19,3 +21,4 @@ updates:
   target-branch: ci/dependabot-updates
   labels:
   - "CI/CD"
+  - skip_changelog

.github/workflows/cd_release.yml

@@ -5,117 +5,35 @@ on:
     types:
     - published
 
-env:
-  PUBLISH_UPDATE_BRANCH: main
-  GIT_USER_NAME: CasperWA
-  GIT_USER_EMAIL: "casper+github@welzel.nu"
-
 jobs:
-
-  update-and-publish:
-    name: Update CHANGELOG and documentation
-    runs-on: ubuntu-latest
+  publish-docs:
+    name: External
+    uses: SINTEF/ci-cd/.github/workflows/cd_release.yml@v2.7.1
     if: github.repository == 'CasperWA/turtle-canon' && startsWith(github.ref, 'refs/tags/v')
-
-    steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-      with:
-        fetch-depth: 0
-
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.9"
-
-    - name: Install Python dependencies
-      run: |
-        python -m pip install -U pip
-        pip install -U setuptools wheel
-        pip install -U -e .[dev]
-
-    - name: Update changelog
-      uses: CharMixer/auto-changelog-action@v1
-      with:
-        token: ${{ secrets.GITHUB_TOKEN }}
-        release_branch: ${{ env.PUBLISH_UPDATE_BRANCH }}
-
-    - name: Update documentation and version - Commit changes and update tag
-      run: .github/utils/update_docs.sh
-
-    - name: Push updates to '${{ env.PUBLISH_UPDATE_BRANCH }}'
-      uses: CasperWA/push-protected@v2
-      with:
-        token: ${{ secrets.RELEASE_PAT }}
-        branch: ${{ env.PUBLISH_UPDATE_BRANCH }}
-        force: true
-        tags: true
-
-    - name: Get tagged versions
-      run: echo "PREVIOUS_VERSION=$(git tag -l --sort -version:refname | sed -n 2p)" >> $GITHUB_ENV
-
-    - name: Create release-specific changelog
-      uses: CharMixer/auto-changelog-action@v1
-      with:
-        token: ${{ secrets.GITHUB_TOKEN }}
-        release_branch: ${{ env.PUBLISH_UPDATE_BRANCH }}
-        since_tag: "${{ env.PREVIOUS_VERSION }}"
-        output: "release_changelog.md"
-
-    - name: Append changelog to release body
-      run: |
-        gh api /repos/${{ github.repository }}/releases/${{ github.event.release.id }} --jq '.body' > release_body.md
-        cat release_changelog.md >> release_body.md
-        gh api /repos/${{ github.repository }}/releases/${{ github.event.release.id }} -X PATCH -F body='@release_body.md'
-      env:
-        GITHUB_TOKEN: ${{ secrets.RELEASE_PAT }}
-
-    # - name: Build source distribution
-    #   run: python ./setup.py sdist
-
-    # - name: Publish package to TestPyPI
-    #   uses: pypa/gh-action-pypi-publish@master
-    #   with:
-    #     user: __token__
-    #     password: ${{ secrets.TEST_PYPI_TOKEN }}
-    #     repository_url: "https://test.pypi.org/legacy"
-
-    # - name: Publish package to PyPI
-    #   uses: pypa/gh-action-pypi-publish@master
-    #   with:
-    #     user: __token__
-    #     password: ${{ secrets.PYPI_TOKEN }}
-
-  docs:
-    name: Build and deploy documentation
-    needs: update-and-publish
-    runs-on: ubuntu-latest
-
-    steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-      with:
-        fetch-depth: 0
-        ref: ${{ env.PUBLISH_UPDATE_BRANCH }}
-        token: ${{ secrets.RELEASE_PAT }}
-
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.9"
-
-    - name: Install Python dependencies
-      run: |
-        python -m pip install -U pip
-        pip install -U setuptools wheel
-        pip install -U -e .[docs]
-
-    - name: Set up git user
-      run: |
-        git config --global user.name "${{ env.GIT_USER_NAME }}"
-        git config --global user.email "${{ env.GIT_USER_EMAIL }}"
-
-    - name: Deploy documentation
-      run: |
-        mike deploy --push --remote origin --branch gh-pages --update-aliases --config-file mkdocs.yml ${GITHUB_REF#refs/tags/v} stable
-        mike deploy --push --remote origin --branch gh-pages --update-aliases --config-file mkdocs.yml latest ${{ env.PUBLISH_UPDATE_BRANCH }}
+    with:
+      # General
+      git_username: CasperWA
+      git_email: "casper.w.andersen@sintef.no"
+      release_branch: main
+
+      # Python package
+      python_package: true
+      package_dirs: turtle_canon
+      install_extras: "[dev]"
+      python_version_build: "3.10"
+      version_update_changes: |
+        "README.md,latest stable version is \*\*.*\*\*\.,latest stable version is **{version}**."
+      build_libs: build
+      build_cmd: "python -m build"
+      changelog_exclude_labels: "skip_changelog,duplicate,question,invalid,wontfix"
+      publish_on_pypi: false
+
+      # Documentation
+      update_docs: true
+      python_version_docs: "3.10"
+      doc_extras: "[docs]"
+      docs_framework: "mkdocs"
+      mkdocs_update_latest: true
+
+    secrets:
+      PAT: ${{ secrets.RELEASE_PAT }}

.github/workflows/ci_automerge_dependabot.yml

@@ -1,79 +1,51 @@
-name: CI - Activate auto-merging for Dependabot PRs
+name: CI - Activate auto-merging for dependencies PRs
 
 on:
   pull_request_target:
-    branches: [ci/dependabot-updates]
+    branches: [ci/dependency-updates]
 
 jobs:
-  update-dependabot-branch:
-    name: Update permanent dependabot branch
+  update-dependencies-branch:
+    name: External
+    uses: SINTEF/ci-cd/.github/workflows/ci_automerge_prs.yml@v2.7.1
     if: github.repository_owner == 'CasperWA' && startsWith(github.event.pull_request.head.ref, 'dependabot/') && github.actor == 'dependabot[bot]'
-    runs-on: ubuntu-latest
-
-    env:
-      DEPENDABOT_BRANCH: ci/dependabot-updates
-      GIT_USER_NAME: CasperWA
-      GIT_USER_EMAIL: "casper+github@welzel.nu"
-
-    steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
-      with:
-        fetch-depth: 0
-        ref: ${{ github.event.pull_request.head.ref }}
-        persist-credentials: false
-
-    - name: Setup Python 3.9
-      uses: actions/setup-python@v5
-      with:
-        python-version: "3.9"
-
-    - name: Set up git user info
-      run: |
-        git config --global user.name "${{ env.GIT_USER_NAME }}"
-        git config --global user.email "${{ env.GIT_USER_EMAIL }}"
-
-    - name: Install Python dependencies
-      run: |
-        python -m pip install --upgrade pip
+    with:
+      perform_changes: true
+      git_username: CasperWA
+      git_email: "casper.w.andersen@sintef.no"
+      changes: |
+        pip install --upgrade pip
         pip install -U setuptools wheel
-
-        while IFS="" read -r line || [ -n "${line}" ]; do
-          if [[ "${line}" =~ ^invoke.*$ ]]; then
-            invoke="${line}"
+        pip install -U .
+
+        RDFLIB_VERSION="$(python -c 'import rdflib; print(rdflib.__version__)')"
+        CANONIZED_FILENAME="turtle_canon_tests_canonized_${RDFLIB_VERSION}.ttl"
+        CANONIZED_FILEPATH="${{ github.workspace }}/tests/static/rdflib_canonized/${CANONIZED_FILENAME}"
+        CORE_TEST_ONTOLOGY_FILE="${{ github.workspace }}/tests/static/rdflib_canon_tests.ttl"
+
+        if [ -f "${CANONIZED_FILEPATH}" ]; then
+          echo "Canonized test file for RDFlib version ${RDFLIB_VERSION} already exists, checking contents..."
+
+          # Copy core test ontology file into a temporary file and canonize it
+          TEMP_FILEPATH="/tmp/${CANONIZED_FILENAME}.ttl"
+          cp "${CORE_TEST_ONTOLOGY_FILE}" "${TEMP_FILEPATH}"
+          turtle-canon "${TEMP_FILEPATH}"
+
+          if [ "$(diff "${TEMP_FILEPATH}" "${CANONIZED_FILEPATH}")" ]; then
+            echo "The existing canonized test file for RDFlib version ${RDFLIB_VERSION} differs from the currently generated one using the same version !"
+            rm -f "${TEMP_FILEPATH}"
+            exit 1
+          else
+            echo "Canonized test file for RDFlib version ${RDFLIB_VERSION} is up-to-date, nothing to do."
+            rm -f "${TEMP_FILEPATH}"
+            exit 0
           fi
-        done < requirements_docs.txt
-
-        pip install ${invoke}
-        pip install -r requirements.txt
-        pip install .
-
-    - name: Run tasks (and commit)
-      run: |
-        invoke update-pytest-reqs
-        invoke create-canonized-test-file
-
-        git add pyproject.toml tests/static/rdflib_canonized
-        if [ -n "$(git status --porcelain pyproject.toml tests/static/rdflib_canonized)" ]; then
-          # Only commit if there's something to commit (git will return non-zero otherwise)
-          echo "Committing update to pytest dependency config and/or RDFlib version-specific canonized test file !"
-          git commit -m "Update version-specific parts\n\nUpdate pytest dependency config and/or\nRDFlib version-specific canonized test file"
-          echo "PUSH_BACK_TO_BRANCH=true" >> $GITHUB_ENV
         else
-          echo "No changes to pytest dependency config and/or RDFlib version-specific canonized test file."
-          echo "PUSH_BACK_TO_BRANCH=false" >> $GITHUB_ENV
-        fi
-
-    - name: Update Dependabot branch
-      if: env.PUSH_BACK_TO_BRANCH == 'true'
-      uses: ad-m/github-push-action@master
-      with:
-        github_token: ${{ secrets.RELEASE_PAT }}
-        branch: ${{ github.event.pull_request.head.ref }}
+          echo "No canonized test file for RDFlib version ${RDFLIB_VERSION} found, creating it..."
 
-    - name: Activate auto-merge
-      run: |
-        PR_ID="$(gh api graphql -F owner='{owner}' -F name='{repo}' -f query='query($owner: String!, $name: String!) {repository(owner: $owner, name: $name) {pullRequest(number: ${{ github.event.pull_request.number }}) {id}}}' --jq '.data.repository.pullRequest.id')"
-        gh api graphql -f pr_id="$PR_ID" -f query='mutation($pr_id: ID!) {enablePullRequestAutoMerge(input:{mergeMethod:SQUASH,pullRequestId:$pr_id }) {pullRequest {number}}}'
-      env:
-        GITHUB_TOKEN: ${{ secrets.RELEASE_PAT }}
+          cp "${CORE_TEST_ONTOLOGY_FILE}" "${CANONIZED_FILEPATH}"
+          turtle-canon "${CANONIZED_FILEPATH}"
+          exit 0
+        fi
+    secrets:
+      PAT: ${{ secrets.RELEASE_PAT }}