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requirements.txt
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requirements.txt
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# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=1_gnu
abyss=2.3.1=hd403d74_0
aioeasywebdav=2.4.0=py36h5fab9bb_1001
aiohttp=3.7.4.post0=py36h8f6f2f9_0
alsa-lib=1.2.3=h516909a_0
amply=0.1.4=py_0
appdirs=1.4.4=pyh9f0ad1d_0
arcs=1.2.2=hc90279e_0
arpack=3.7.0=hdefa2d7_2
async-timeout=3.0.1=py_1000
atk-1.0=2.36.0=h3371d22_4
attmap=0.13.0=pyhd8ed1ab_0
attrs=21.2.0=pyhd8ed1ab_0
backports=1.0=py36_1
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bcrypt=3.2.0=py36h8f6f2f9_1
beagle=5.2_21Apr21.304=hdfd78af_0
bedtools=2.30.0=h7d7f7ad_2
binutils_impl_linux-64=2.36.1=h193b22a_2
biopython=1.79=py36h8f6f2f9_0
bokeh=1.4.0=py36h9f0ad1d_1
boto3=1.18.44=pyhd8ed1ab_0
botocore=1.21.44=pyhd8ed1ab_0
brotlipy=0.7.0=py36h8f6f2f9_1001
bwa=0.7.17=h5bf99c6_8
bzip2=1.0.8=h7f98852_4
c-ares=1.17.2=h7f98852_0
ca-certificates=2020.10.14=0
cachetools=4.2.2=pyhd8ed1ab_0
cairo=1.16.0=h6cf1ce9_1008
certifi=2020.6.20=py36_0
cffi=1.14.6=py36hd8eec40_1
chardet=4.0.0=py36h5fab9bb_1
coincbc=2.10.5=hcee13e7_1
conda=4.10.3=py36h5fab9bb_1
conda-package-handling=1.7.3=py36h8f6f2f9_0
configargparse=1.5.2=pyhd8ed1ab_0
connection_pool=0.0.3=pyhd3deb0d_0
cryptography=3.4.7=py36hb60f036_0
curl=7.79.0=hea6ffbf_0
cutadapt=3.4=py36hc5360cc_1
cycler=0.10.0=py36_0
dataclasses=0.8=pyh787bdff_2
datrie=0.8.2=py36h8f6f2f9_2
dbus=1.13.18=hb2f20db_0
decorator=4.4.2=py_0
dnaio=0.5.2=py36hc5360cc_0
docutils=0.17.1=py36h5fab9bb_0
dropbox=11.19.0=pyhd8ed1ab_0
expat=2.4.1=h9c3ff4c_0
fftw=3.3.10=nompi_hcdd671c_100
filechunkio=1.8=py36_1
filelock=3.0.12=pyh9f0ad1d_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=3.000=h77eed37_0
font-ttf-source-code-pro=2.038=h77eed37_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.13.1=hba837de_1005
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
freetype=2.10.4=h0708190_1
fribidi=1.0.10=h36c2ea0_0
ftputil=5.0.1=pyhd8ed1ab_0
gcc=11.2.0=h702ea55_1
gcc_impl_linux-64=11.2.0=h82a94d6_8
gdk-pixbuf=2.42.6=h04a7f16_0
gettext=0.21.0=hf68c758_0
ghostscript=9.54.0=h9c3ff4c_1
giflib=5.2.1=h36c2ea0_2
gitdb=4.0.7=pyhd8ed1ab_0
gitpython=3.1.18=pyhd8ed1ab_0
glib=2.68.4=h9c3ff4c_1
glib-tools=2.68.4=h9c3ff4c_1
glpk=4.65=h9202a9a_1004
gmp=6.2.1=h58526e2_0
google-api-core=1.31.2=pyhd8ed1ab_0
google-api-python-client=2.21.0=pyhd8ed1ab_0
google-auth=1.35.0=pyh6c4a22f_0
google-auth-httplib2=0.1.0=pyhd8ed1ab_0
google-cloud-core=1.7.2=pyh6c4a22f_0
google-cloud-storage=1.42.0=pyh6c4a22f_0
google-crc32c=1.1.2=py36h0208b43_0
google-resumable-media=2.0.2=pyh6c4a22f_0
googleapis-common-protos=1.53.0=py36h5fab9bb_0
graphite2=1.3.14=h23475e2_0
graphviz=2.49.0=h85b4f2f_0
grpcio=1.38.1=py36h8e87921_0
gst-plugins-base=1.18.5=hf529b03_0
gstreamer=1.18.5=h76c114f_0
gtk2=2.24.33=h539f30e_1
gts=0.7.6=h64030ff_2
harfbuzz=2.9.1=h83ec7ef_0
htslib=1.9=ha228f0b_7
httplib2=0.19.1=pyhd8ed1ab_0
icu=68.1=h58526e2_0
idna=2.10=pyh9f0ad1d_0
idna_ssl=1.1.0=py36h9f0ad1d_1001
imagemagick=7.1.0_8=pl5321hb118871_0
importlib-metadata=4.8.1=py36h5fab9bb_0
importlib_metadata=4.8.1=hd8ed1ab_0
iniconfig=1.1.1=pyh9f0ad1d_0
intervaltree=3.0.2=py_0
ipython_genutils=0.2.0=py36_0
isa-l=2.30.0=ha770c72_4
jbig=2.1=h7f98852_2003
jinja2=3.0.1=pyhd8ed1ab_0
jmespath=0.10.0=pyh9f0ad1d_0
jpeg=9d=h36c2ea0_0
jsonschema=3.2.0=py36h9f0ad1d_1
jupyter_core=4.8.1=py36h5fab9bb_0
k8=0.2.5=h9a82719_1
kernel-headers_linux-64=2.6.32=he073ed8_14
kiwisolver=1.3.1=py36h605e78d_1
krb5=1.19.2=hcc1bbae_0
lcms2=2.12=hddcbb42_0
ld_impl_linux-64=2.36.1=hea4e1c9_2
libarchive=3.5.2=hccf745f_0
libblas=3.9.0=11_linux64_openblas
libcblas=3.9.0=11_linux64_openblas
libclang=11.1.0=default_ha53f305_1
libcrc32c=1.1.1=h9c3ff4c_2
libcurl=7.79.0=h2574ce0_0
libdeflate=1.0=h14c3975_1
libedit=3.1.20191231=he28a2e2_2
libev=4.33=h516909a_1
libevent=2.1.10=hcdb4288_3
libffi=3.4.2=h9c3ff4c_1
libgcc=7.2.0=h69d50b8_2
libgcc-devel_linux-64=11.2.0=h0952999_8
libgcc-ng=11.2.0=h1d223b6_8
libgd=2.3.2=h78a0170_0
libgfortran-ng=11.2.0=h69a702a_8
libgfortran5=11.2.0=h5c6108e_8
libglib=2.68.4=h174f98d_1
libgomp=11.2.0=h1d223b6_8
libiconv=1.16=h516909a_0
liblapack=3.9.0=11_linux64_openblas
libllvm11=11.1.0=hf817b99_2
libnghttp2=1.43.0=h812cca2_0
libogg=1.3.2=h7b6447c_0
libopenblas=0.3.17=pthreads_h8fe5266_1
libopus=1.3.1=h7b6447c_0
libpng=1.6.37=h21135ba_2
libpq=13.3=hd57d9b9_0
libprotobuf=3.18.0=h780b84a_0
librsvg=2.50.7=hc3c00ef_0
libsanitizer=11.2.0=he4da1e4_8
libsodium=1.0.18=h36c2ea0_1
libsolv=0.7.19=h780b84a_5
libssh2=1.10.0=ha56f1ee_0
libstdcxx-ng=11.2.0=he4da1e4_8
libtiff=4.3.0=hf544144_0
libtool=2.4.6=h9c3ff4c_1008
libuuid=2.32.1=h7f98852_1000
libvorbis=1.3.7=h7b6447c_0
libwebp=1.2.1=h3452ae3_0
libwebp-base=1.2.1=h7f98852_0
libxcb=1.14=h7b6447c_0
libxkbcommon=1.0.3=he3ba5ed_0
libxml2=2.9.12=h72842e0_0
links=1.8.7=pl5321h7d875b9_3
logmuse=0.2.6=pyh8c360ce_0
longstitch=1.0.1=hdfd78af_1
lz4-c=1.9.3=h9c3ff4c_1
lzo=2.10=h516909a_1000
make=4.3=hd18ef5c_1
mamba=0.15.3=py36h05d92e0_0
markupsafe=2.0.1=py36h8f6f2f9_0
matplotlib=3.3.4=py36h06a4308_0
matplotlib-base=3.3.4=py36hd391965_0
metis=5.1.0=h58526e2_1006
minimap2=2.22=h5bf99c6_0
more-itertools=8.10.0=pyhd8ed1ab_0
mpfr=4.1.0=h9202a9a_1
mpi=1.0=openmpi
multidict=5.1.0=py36h8f6f2f9_1
mysql-common=8.0.25=ha770c72_2
mysql-libs=8.0.25=hfa10184_2
nbformat=5.1.3=pyhd8ed1ab_0
ncurses=6.2=h58526e2_4
networkx=2.6.3=pyhd8ed1ab_0
nspr=4.30=h9c3ff4c_0
nss=3.69=hb5efdd6_0
ntlink=1.0.1=py36hb377018_0
numpy=1.19.5=py36hfc0c790_2
oauth2client=4.1.3=py_0
olefile=0.46=pyh9f0ad1d_1
openjdk=11.0.9.1=h5cc2fde_1
openjpeg=2.4.0=hb52868f_1
openmpi=4.1.1=hbfc84c5_0
openssl=1.1.1l=h7f98852_0
packaging=21.0=pyhd8ed1ab_0
pandas=1.1.5=py36h284efc9_0
pango=1.48.10=hb8ff022_0
paramiko=2.7.2=pyh9f0ad1d_0
pbzip2=1.1.13=0
pcre=8.45=h9c3ff4c_0
peppy=0.31.1=pyhd8ed1ab_0
perl=5.32.1=0_h7f98852_perl5
pigz=2.6=h27826a3_0
pillow=8.3.2=py36h676a545_0
pip=21.2.4=pyhd8ed1ab_0
pixman=0.40.0=h36c2ea0_0
pkg-config=0.29.2=h36c2ea0_1008
platypus-opt=1.0.4=pyh9f0ad1d_0
pluggy=1.0.0=py36h5fab9bb_1
ply=3.11=py36_0
prettytable=2.2.0=pyhd8ed1ab_0
protobuf=3.18.0=py36hc4f0c31_0
psutil=5.8.0=py36h8f6f2f9_1
pulp=2.5.0=py36h5fab9bb_0
py=1.10.0=pyhd3deb0d_0
pyasn1=0.4.8=py_0
pyasn1-modules=0.2.8=py_0
pybedtools=0.8.1=py36h5202f60_2
pycosat=0.6.3=py36h8f6f2f9_1006
pycparser=2.20=pyh9f0ad1d_2
pygments=2.10.0=pyhd8ed1ab_0
pygraphviz=1.6=py36he9cec78_1
pynacl=1.4.0=py36h8f6f2f9_2
pyopenssl=20.0.1=pyhd8ed1ab_0
pyparsing=2.4.7=pyh9f0ad1d_0
pyqt=5.12.3=py36h5fab9bb_7
pyqt-impl=5.12.3=py36h7ec31b9_7
pyqt5-sip=4.19.18=py36hc4f0c31_7
pyqtchart=5.12=py36h7ec31b9_7
pyqtwebengine=5.12.1=py36h7ec31b9_7
pyrsistent=0.17.3=py36h8f6f2f9_2
pysam=0.15.3=py36hda2845c_1
pysftp=0.2.9=py36_0
pysocks=1.7.1=py36h5fab9bb_3
pytest=6.2.5=py36h5fab9bb_0
python=3.6.13=hb7a2778_1_cpython
python-dateutil=2.8.2=pyhd8ed1ab_0
python-igraph=0.9.6=py36h644ed5e_0
python-irodsclient=1.0.0=pyhd8ed1ab_0
python-isal=0.11.1=py36h8f6f2f9_0
python_abi=3.6=2_cp36m
pytz=2021.1=pyhd8ed1ab_0
pyu2f=0.1.5=pyhd8ed1ab_0
pyvcf=0.6.8=py36_0
pyyaml=5.4.1=py36h8f6f2f9_1
qt=5.12.9=hda022c4_4
ratelimiter=1.2.0=py36h9f0ad1d_1001
readline=8.1=h46c0cb4_0
reproc=14.2.3=h7f98852_0
reproc-cpp=14.2.3=h9c3ff4c_0
requests=2.25.1=pyhd3deb0d_0
rsa=4.7.2=pyh44b312d_0
ruamel_yaml=0.15.80=py36h8f6f2f9_1004
s3transfer=0.5.0=pyhd8ed1ab_0
sabre=1.000=h5bf99c6_2
samtools=1.7=1
scipy=1.5.3=py36h81d768a_1
seaborn=0.11.0=py_0
seqtk=1.3=h5bf99c6_3
setuptools=58.0.4=py36h5fab9bb_0
simplejson=3.17.5=py36h8f6f2f9_0
six=1.16.0=pyh6c4a22f_0
slacker=0.14.0=py_0
smart_open=5.2.1=pyhd8ed1ab_0
smmap=3.0.5=pyh44b312d_0
snakemake=6.8.0=hdfd78af_0
snakemake-minimal=6.8.0=pyhdfd78af_0
sortedcontainers=2.4.0=pyhd8ed1ab_0
sqlite=3.36.0=h9cd32fc_1
stone=3.2.1=pyhd8ed1ab_0
stopit=1.1.2=py_0
suitesparse=5.10.1=h9e50725_1
sysroot_linux-64=2.12=he073ed8_14
tabulate=0.8.9=pyhd8ed1ab_0
tbb=2021.3.0=h4bd325d_0
texttable=1.6.4=pyhd8ed1ab_0
tigmint=1.2.4=py36hb377018_1
tk=8.6.11=h27826a3_1
toml=0.10.2=pyhd8ed1ab_0
toposort=1.6=pyhd8ed1ab_0
tornado=6.1=py36h8f6f2f9_1
tqdm=4.7.2=py36_0
traitlets=4.3.3=py36h9f0ad1d_1
typing-extensions=3.10.0.2=hd3eb1b0_0
typing_extensions=3.10.0.2=pyh06a4308_0
ubiquerg=0.6.1=pyh9f0ad1d_0
uritemplate=3.0.1=py_0
urllib3=1.26.6=pyhd8ed1ab_0
util-linux=2.36=py36h10aa70c_1
vcftools=0.1.16=h9a82719_5
veracitools=0.1.3=py_0
wcwidth=0.2.5=pyh9f0ad1d_2
wheel=0.37.0=pyhd8ed1ab_1
wrapt=1.12.1=py36h8f6f2f9_3
xmlrunner=1.7.7=py_0
xopen=1.2.0=py36h5fab9bb_0
xorg-fixesproto=5.0=h7f98852_1002
xorg-inputproto=2.3.2=h7f98852_1002
xorg-kbproto=1.0.7=h7f98852_1002
xorg-libice=1.0.10=h7f98852_0
xorg-libsm=1.2.3=hd9c2040_1000
xorg-libx11=1.7.2=h7f98852_0
xorg-libxau=1.0.9=h7f98852_0
xorg-libxext=1.3.4=h7f98852_1
xorg-libxfixes=5.0.3=h7f98852_1004
xorg-libxi=1.7.10=h7f98852_0
xorg-libxrender=0.9.10=h7f98852_1003
xorg-libxt=1.2.1=h7f98852_2
xorg-libxtst=1.2.3=h7f98852_1002
xorg-recordproto=1.14.2=h7f98852_1002
xorg-renderproto=0.11.1=h7f98852_1002
xorg-xextproto=7.3.0=h7f98852_1002
xorg-xproto=7.0.31=h7f98852_1007
xz=5.2.5=h516909a_1
yaml=0.2.5=h516909a_0
yarl=1.5.1=py36h8c4c3a4_0
zipp=3.5.0=pyhd8ed1ab_0
zlib=1.2.11=h516909a_1010
zsh=5.6.2=h8f967e6_1001
zstd=1.5.0=ha95c52a_0