.gitignore

.DS_Store

# do not track all the input and output. Only track scripts 
parameters_tuning_GA_ensemble/input/*
parameters_tuning_GA_ensemble/output/*

benchmark_network_inference_ensemble_BEELINE/Beeline_benchmark/* 
benchmark_network_inference_ensemble_BEELINE/output/* 

benchmark_simulators_parallel_time/BoolODE/* 
benchmark_simulators_parallel_time/output/* 

benchmark_network_inference_real/Beeline_benchmark/*
benchmark_network_inference_real/output/*

benchmark_simulators_time/BoolODE/* 
benchmark_simulators_time/output/* 

in-silico_perturbations/literature_validations/* 
in-silico_perturbations/output/* 

curate_real_training_data/input/* 
curate_real_training_data/output/* 

benchmark_simulators_similarity/BEELINE-data/* 
benchmark_simulators_similarity/BoolODE/* 
benchmark_simulators_similarity/output/* 

benchmark_training_time_machine/inputs/* 
benchmark_training_time_machine/output/* 

reviewer_comments_OneSC/input/*
reviewer_comments_OneSC/output/*