-
Notifications
You must be signed in to change notification settings - Fork 15
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
alevin-fry view
panicked at the prospect of providing help (or working)
#48
Comments
Hi @j-andrews7, Thanks for the detailed report. Indeed, while this is not currently part of any standard workflow, there should certainly be a functional help message and there should be no panic! We'll try to clean this up for the next release. cc @DongzeHE — do you think you could clean up the interface of the |
Hi @rob-p, yes I will do this today. Should I directly create a PR to the master branch when I am done? |
This is now fixed in v0.5.1 — thanks again for the report! |
I am trying to determine what all can be done to/with the RAD file output via a typical
alevin-fry quant
run, but I am struggling to find much info about theview
command. Ultimately, I was hoping to convert back to BAM to spotcheck induction of a mutation in our model system.I was hoping the command line help would yield some insight, but it throws an error:
I looked through the repo code to find the proper args (
-r
, etc), but it still tosses the same error and doesn't seem this subcommand is functional yet.I'm guessing you're well aware of this, and it's uncommon for people to want to interact with the RAD files directly. But it may be a good idea to remove it from the CLI help subcommand list until it's usable.
The text was updated successfully, but these errors were encountered: